Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2278 and GFF2279 are separated by 1 nucleotides GFF2279 and GFF2280 are separated by 31 nucleotides
GFF2278 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 331,897 to 333,711
GFF2278
GFF2279 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 333,713 to 334,753
GFF2279
GFF2280 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 334,785 to 335,921
GFF2280
Position (kb) 333
334
335 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 332.765 kb on + strand, within GFF2278 at 332.766 kb on - strand, within GFF2278 at 332.766 kb on - strand, within GFF2278 at 332.810 kb on + strand, within GFF2278 at 332.811 kb on - strand, within GFF2278 at 332.811 kb on - strand, within GFF2278 at 333.195 kb on - strand, within GFF2278 at 333.195 kb on - strand, within GFF2278 at 333.263 kb on + strand, within GFF2278 at 333.263 kb on + strand, within GFF2278 at 333.264 kb on - strand, within GFF2278 at 333.296 kb on + strand, within GFF2278 at 333.296 kb on + strand, within GFF2278 at 333.297 kb on - strand, within GFF2278 at 333.297 kb on - strand, within GFF2278 at 333.297 kb on - strand, within GFF2278 at 333.299 kb on + strand, within GFF2278 at 333.299 kb on + strand, within GFF2278 at 333.338 kb on + strand, within GFF2278 at 333.338 kb on + strand, within GFF2278 at 333.339 kb on - strand, within GFF2278 at 333.452 kb on + strand, within GFF2278 at 333.464 kb on + strand, within GFF2278 at 333.465 kb on - strand, within GFF2278 at 333.465 kb on - strand, within GFF2278 at 333.465 kb on - strand, within GFF2278 at 333.554 kb on + strand at 333.555 kb on - strand at 333.555 kb on - strand at 333.555 kb on - strand at 333.566 kb on + strand at 333.566 kb on + strand at 333.567 kb on - strand at 333.567 kb on - strand at 333.567 kb on - strand at 333.870 kb on + strand, within GFF2279 at 333.937 kb on - strand, within GFF2279 at 333.937 kb on - strand, within GFF2279 at 333.937 kb on - strand, within GFF2279 at 334.090 kb on - strand, within GFF2279 at 334.326 kb on + strand, within GFF2279 at 334.327 kb on - strand, within GFF2279 at 334.327 kb on - strand, within GFF2279 at 334.327 kb on - strand, within GFF2279 at 334.614 kb on + strand, within GFF2279 at 334.695 kb on + strand at 334.695 kb on + strand at 334.695 kb on + strand at 334.695 kb on + strand at 334.695 kb on + strand at 334.696 kb on - strand at 334.696 kb on - strand at 334.696 kb on - strand at 334.786 kb on + strand at 334.787 kb on - strand at 334.787 kb on - strand at 334.847 kb on - strand at 334.858 kb on + strand at 335.051 kb on - strand, within GFF2280 at 335.051 kb on - strand, within GFF2280 at 335.216 kb on - strand, within GFF2280 at 335.216 kb on - strand, within GFF2280 at 335.231 kb on - strand, within GFF2280 at 335.231 kb on - strand, within GFF2280 at 335.444 kb on + strand, within GFF2280 at 335.445 kb on - strand, within GFF2280 at 335.445 kb on - strand, within GFF2280 at 335.445 kb on - strand, within GFF2280 at 335.447 kb on - strand, within GFF2280 at 335.447 kb on - strand, within GFF2280 at 335.504 kb on - strand, within GFF2280
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 332,765 + GFF2278 0.48 -0.6 332,766 - GFF2278 0.48 -0.7 332,766 - GFF2278 0.48 -1.5 332,810 + GFF2278 0.50 -1.5 332,811 - GFF2278 0.50 -3.3 332,811 - GFF2278 0.50 -0.8 333,195 - GFF2278 0.72 +0.4 333,195 - GFF2278 0.72 -0.1 333,263 + GFF2278 0.75 -1.4 333,263 + GFF2278 0.75 +0.8 333,264 - GFF2278 0.75 +1.3 333,296 + GFF2278 0.77 +0.3 333,296 + GFF2278 0.77 -1.0 333,297 - GFF2278 0.77 +0.0 333,297 - GFF2278 0.77 -1.0 333,297 - GFF2278 0.77 -0.2 333,299 + GFF2278 0.77 -0.2 333,299 + GFF2278 0.77 -0.5 333,338 + GFF2278 0.79 +0.3 333,338 + GFF2278 0.79 +0.7 333,339 - GFF2278 0.79 -0.3 333,452 + GFF2278 0.86 -1.8 333,464 + GFF2278 0.86 -0.6 333,465 - GFF2278 0.86 +0.1 333,465 - GFF2278 0.86 -0.2 333,465 - GFF2278 0.86 -0.6 333,554 + +1.1 333,555 - -0.5 333,555 - +1.2 333,555 - +0.2 333,566 + +0.1 333,566 + -0.8 333,567 - +0.5 333,567 - +1.0 333,567 - +3.2 333,870 + GFF2279 0.15 +1.4 333,937 - GFF2279 0.22 +0.5 333,937 - GFF2279 0.22 -1.5 333,937 - GFF2279 0.22 +0.6 334,090 - GFF2279 0.36 -0.3 334,326 + GFF2279 0.59 -1.0 334,327 - GFF2279 0.59 +0.4 334,327 - GFF2279 0.59 +1.8 334,327 - GFF2279 0.59 +1.0 334,614 + GFF2279 0.87 -0.2 334,695 + -0.4 334,695 + -2.0 334,695 + -0.1 334,695 + +0.2 334,695 + -0.2 334,696 - +0.1 334,696 - -0.2 334,696 - -0.1 334,786 + +0.8 334,787 - +0.0 334,787 - -0.5 334,847 - -1.0 334,858 + -1.0 335,051 - GFF2280 0.23 +0.6 335,051 - GFF2280 0.23 +2.7 335,216 - GFF2280 0.38 -0.6 335,216 - GFF2280 0.38 -1.3 335,231 - GFF2280 0.39 -2.1 335,231 - GFF2280 0.39 +0.2 335,444 + GFF2280 0.58 +0.9 335,445 - GFF2280 0.58 -0.1 335,445 - GFF2280 0.58 -0.5 335,445 - GFF2280 0.58 +0.0 335,447 - GFF2280 0.58 +0.2 335,447 - GFF2280 0.58 +0.5 335,504 - GFF2280 0.63 +1.2
Or see this region's nucleotide sequence