Strain Fitness in Variovorax sp. SCN45 around GFF2183

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2182 and GFF2183 are separated by 10 nucleotidesGFF2183 and GFF2184 are separated by 67 nucleotides GFF2182 - Inner membrane component of TAM transport system, at 235,442 to 239,530 GFF2182 GFF2183 - Outer membrane component of TAM transport system, at 239,541 to 241,478 GFF2183 GFF2184 - VWA containing CoxE family protein, at 241,546 to 242,733 GFF2184 Position (kb) 239 240 241 242Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 238.920 kb on + strand, within GFF2182at 238.921 kb on - strand, within GFF2182at 238.921 kb on - strand, within GFF2182at 238.921 kb on - strand, within GFF2182at 238.921 kb on - strand, within GFF2182at 238.921 kb on - strand, within GFF2182at 238.977 kb on + strand, within GFF2182at 238.977 kb on + strand, within GFF2182at 238.977 kb on + strand, within GFF2182at 238.977 kb on + strand, within GFF2182at 238.977 kb on + strand, within GFF2182at 238.977 kb on + strand, within GFF2182at 238.978 kb on - strand, within GFF2182at 238.978 kb on - strand, within GFF2182at 238.978 kb on - strand, within GFF2182at 238.978 kb on - strand, within GFF2182at 238.978 kb on - strand, within GFF2182at 238.978 kb on - strand, within GFF2182at 238.983 kb on + strand, within GFF2182at 238.984 kb on - strand, within GFF2182at 238.984 kb on - strand, within GFF2182at 238.984 kb on - strand, within GFF2182at 238.984 kb on - strand, within GFF2182at 238.984 kb on - strand, within GFF2182at 238.984 kb on - strand, within GFF2182at 238.984 kb on - strand, within GFF2182at 238.984 kb on - strand, within GFF2182at 238.984 kb on - strand, within GFF2182at 239.244 kb on + strandat 239.245 kb on - strandat 239.365 kb on + strandat 239.366 kb on - strandat 239.366 kb on - strandat 239.366 kb on - strandat 239.746 kb on + strand, within GFF2183at 239.747 kb on - strand, within GFF2183at 239.747 kb on - strand, within GFF2183at 239.747 kb on - strand, within GFF2183at 239.839 kb on + strand, within GFF2183at 239.839 kb on + strand, within GFF2183at 239.839 kb on + strand, within GFF2183at 239.839 kb on + strand, within GFF2183at 239.839 kb on + strand, within GFF2183at 239.840 kb on - strand, within GFF2183at 239.840 kb on - strand, within GFF2183at 239.840 kb on - strand, within GFF2183at 239.840 kb on - strand, within GFF2183at 239.840 kb on - strand, within GFF2183at 239.840 kb on - strand, within GFF2183at 239.840 kb on - strand, within GFF2183at 239.846 kb on - strand, within GFF2183at 240.019 kb on + strand, within GFF2183at 240.019 kb on + strand, within GFF2183at 240.019 kb on + strand, within GFF2183at 240.019 kb on + strand, within GFF2183at 240.020 kb on - strand, within GFF2183at 240.020 kb on - strand, within GFF2183at 240.122 kb on - strand, within GFF2183at 240.196 kb on + strand, within GFF2183at 240.202 kb on + strand, within GFF2183at 240.203 kb on - strand, within GFF2183at 240.203 kb on - strand, within GFF2183at 240.215 kb on - strand, within GFF2183at 240.215 kb on - strand, within GFF2183at 240.215 kb on - strand, within GFF2183at 240.215 kb on - strand, within GFF2183at 240.280 kb on + strand, within GFF2183at 240.281 kb on - strand, within GFF2183at 240.281 kb on - strand, within GFF2183at 240.281 kb on - strand, within GFF2183at 240.281 kb on - strand, within GFF2183at 240.281 kb on - strand, within GFF2183at 240.281 kb on - strand, within GFF2183at 240.281 kb on - strand, within GFF2183at 240.589 kb on + strand, within GFF2183at 240.589 kb on + strand, within GFF2183at 240.590 kb on - strand, within GFF2183at 240.590 kb on - strand, within GFF2183at 240.590 kb on - strand, within GFF2183at 240.590 kb on - strand, within GFF2183at 240.590 kb on - strand, within GFF2183at 240.593 kb on - strand, within GFF2183at 240.644 kb on - strand, within GFF2183at 240.644 kb on - strand, within GFF2183at 240.644 kb on - strand, within GFF2183at 240.644 kb on - strand, within GFF2183at 240.733 kb on + strand, within GFF2183at 240.733 kb on + strand, within GFF2183at 240.734 kb on - strand, within GFF2183at 240.751 kb on + strand, within GFF2183at 240.751 kb on + strand, within GFF2183at 240.751 kb on + strand, within GFF2183at 240.752 kb on - strand, within GFF2183at 240.752 kb on - strand, within GFF2183at 240.976 kb on + strand, within GFF2183at 240.977 kb on - strand, within GFF2183at 241.100 kb on - strand, within GFF2183at 241.158 kb on + strand, within GFF2183at 241.222 kb on + strand, within GFF2183at 241.543 kb on + strandat 241.544 kb on - strandat 241.547 kb on + strandat 241.547 kb on + strandat 241.547 kb on + strandat 241.547 kb on + strandat 241.547 kb on + strandat 241.548 kb on - strandat 241.548 kb on - strandat 241.548 kb on - strandat 241.571 kb on - strandat 241.598 kb on + strandat 241.598 kb on + strandat 241.598 kb on + strandat 241.598 kb on + strandat 241.599 kb on - strandat 241.599 kb on - strandat 241.599 kb on - strandat 241.599 kb on - strandat 241.745 kb on + strand, within GFF2184at 241.746 kb on - strand, within GFF2184at 241.779 kb on - strand, within GFF2184at 241.817 kb on + strand, within GFF2184at 241.818 kb on - strand, within GFF2184at 241.818 kb on - strand, within GFF2184at 241.829 kb on + strand, within GFF2184at 241.829 kb on + strand, within GFF2184at 241.830 kb on - strand, within GFF2184at 241.830 kb on - strand, within GFF2184at 241.901 kb on + strand, within GFF2184at 241.901 kb on + strand, within GFF2184at 241.901 kb on + strand, within GFF2184at 241.902 kb on - strand, within GFF2184at 241.902 kb on - strand, within GFF2184at 241.919 kb on + strand, within GFF2184at 241.919 kb on + strand, within GFF2184at 241.920 kb on - strand, within GFF2184at 241.920 kb on - strand, within GFF2184at 242.204 kb on + strand, within GFF2184at 242.204 kb on + strand, within GFF2184at 242.213 kb on + strand, within GFF2184at 242.272 kb on + strand, within GFF2184at 242.272 kb on + strand, within GFF2184at 242.272 kb on + strand, within GFF2184at 242.272 kb on + strand, within GFF2184at 242.272 kb on + strand, within GFF2184at 242.273 kb on - strand, within GFF2184at 242.273 kb on - strand, within GFF2184at 242.288 kb on + strand, within GFF2184

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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238,920 + GFF2182 0.85 -1.2
238,921 - GFF2182 0.85 -2.4
238,921 - GFF2182 0.85 -1.7
238,921 - GFF2182 0.85 -0.5
238,921 - GFF2182 0.85 -2.4
238,921 - GFF2182 0.85 -2.3
238,977 + GFF2182 0.86 -1.3
238,977 + GFF2182 0.86 -1.5
238,977 + GFF2182 0.86 -1.3
238,977 + GFF2182 0.86 +0.0
238,977 + GFF2182 0.86 -1.3
238,977 + GFF2182 0.86 -0.8
238,978 - GFF2182 0.86 -0.5
238,978 - GFF2182 0.86 -0.4
238,978 - GFF2182 0.86 -1.8
238,978 - GFF2182 0.86 -1.1
238,978 - GFF2182 0.86 -1.3
238,978 - GFF2182 0.86 -3.3
238,983 + GFF2182 0.87 -0.7
238,984 - GFF2182 0.87 +0.2
238,984 - GFF2182 0.87 -2.8
238,984 - GFF2182 0.87 -1.7
238,984 - GFF2182 0.87 -1.5
238,984 - GFF2182 0.87 -2.2
238,984 - GFF2182 0.87 -2.7
238,984 - GFF2182 0.87 -2.5
238,984 - GFF2182 0.87 -1.1
238,984 - GFF2182 0.87 -0.3
239,244 + -0.3
239,245 - -0.8
239,365 + -0.8
239,366 - -0.7
239,366 - -0.8
239,366 - -1.7
239,746 + GFF2183 0.11 -1.5
239,747 - GFF2183 0.11 -4.5
239,747 - GFF2183 0.11 -0.7
239,747 - GFF2183 0.11 +0.8
239,839 + GFF2183 0.15 -1.1
239,839 + GFF2183 0.15 -2.6
239,839 + GFF2183 0.15 -0.8
239,839 + GFF2183 0.15 -0.4
239,839 + GFF2183 0.15 -0.3
239,840 - GFF2183 0.15 -1.5
239,840 - GFF2183 0.15 -1.0
239,840 - GFF2183 0.15 -1.7
239,840 - GFF2183 0.15 -0.2
239,840 - GFF2183 0.15 -1.3
239,840 - GFF2183 0.15 -1.6
239,840 - GFF2183 0.15 -0.7
239,846 - GFF2183 0.16 -0.3
240,019 + GFF2183 0.25 -0.8
240,019 + GFF2183 0.25 +0.5
240,019 + GFF2183 0.25 -2.8
240,019 + GFF2183 0.25 -0.2
240,020 - GFF2183 0.25 -1.4
240,020 - GFF2183 0.25 -3.2
240,122 - GFF2183 0.30 -1.6
240,196 + GFF2183 0.34 -0.2
240,202 + GFF2183 0.34 -1.8
240,203 - GFF2183 0.34 -2.7
240,203 - GFF2183 0.34 -2.8
240,215 - GFF2183 0.35 -2.3
240,215 - GFF2183 0.35 +0.3
240,215 - GFF2183 0.35 -1.0
240,215 - GFF2183 0.35 -0.6
240,280 + GFF2183 0.38 -0.5
240,281 - GFF2183 0.38 -1.6
240,281 - GFF2183 0.38 -2.2
240,281 - GFF2183 0.38 -2.5
240,281 - GFF2183 0.38 +0.0
240,281 - GFF2183 0.38 +0.5
240,281 - GFF2183 0.38 -2.7
240,281 - GFF2183 0.38 +1.3
240,589 + GFF2183 0.54 -1.3
240,589 + GFF2183 0.54 -1.1
240,590 - GFF2183 0.54 +0.5
240,590 - GFF2183 0.54 -1.2
240,590 - GFF2183 0.54 -1.5
240,590 - GFF2183 0.54 -1.3
240,590 - GFF2183 0.54 +0.1
240,593 - GFF2183 0.54 -1.6
240,644 - GFF2183 0.57 -1.2
240,644 - GFF2183 0.57 -1.7
240,644 - GFF2183 0.57 -1.2
240,644 - GFF2183 0.57 -2.6
240,733 + GFF2183 0.62 -1.2
240,733 + GFF2183 0.62 -2.0
240,734 - GFF2183 0.62 -2.3
240,751 + GFF2183 0.62 -0.9
240,751 + GFF2183 0.62 -2.3
240,751 + GFF2183 0.62 -2.5
240,752 - GFF2183 0.62 -1.5
240,752 - GFF2183 0.62 -0.0
240,976 + GFF2183 0.74 -2.5
240,977 - GFF2183 0.74 +0.6
241,100 - GFF2183 0.80 -1.4
241,158 + GFF2183 0.83 -2.6
241,222 + GFF2183 0.87 -1.1
241,543 + -0.8
241,544 - -0.0
241,547 + -1.6
241,547 + +0.4
241,547 + -0.4
241,547 + -0.1
241,547 + +1.0
241,548 - -0.9
241,548 - +0.2
241,548 - +0.8
241,571 - -0.5
241,598 + +0.0
241,598 + +0.0
241,598 + +0.2
241,598 + -0.3
241,599 - +0.3
241,599 - -0.2
241,599 - -0.0
241,599 - -0.4
241,745 + GFF2184 0.17 -0.6
241,746 - GFF2184 0.17 +0.8
241,779 - GFF2184 0.20 +0.2
241,817 + GFF2184 0.23 +1.0
241,818 - GFF2184 0.23 -1.0
241,818 - GFF2184 0.23 -0.9
241,829 + GFF2184 0.24 -1.1
241,829 + GFF2184 0.24 -2.7
241,830 - GFF2184 0.24 +0.5
241,830 - GFF2184 0.24 +1.4
241,901 + GFF2184 0.30 +0.4
241,901 + GFF2184 0.30 -0.2
241,901 + GFF2184 0.30 +0.8
241,902 - GFF2184 0.30 -1.0
241,902 - GFF2184 0.30 -1.0
241,919 + GFF2184 0.31 +0.3
241,919 + GFF2184 0.31 +0.6
241,920 - GFF2184 0.31 -1.5
241,920 - GFF2184 0.31 +0.2
242,204 + GFF2184 0.55 -1.0
242,204 + GFF2184 0.55 -0.8
242,213 + GFF2184 0.56 -0.9
242,272 + GFF2184 0.61 +0.2
242,272 + GFF2184 0.61 -0.5
242,272 + GFF2184 0.61 +0.8
242,272 + GFF2184 0.61 -0.3
242,272 + GFF2184 0.61 -1.1
242,273 - GFF2184 0.61 -0.8
242,273 - GFF2184 0.61 -0.7
242,288 + GFF2184 0.62 -0.3

Or see this region's nucleotide sequence