Strain Fitness in Variovorax sp. SCN45 around GFF1961

Experiment: M9 with Supernatant from Cyptococcus

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus
2,786	+				+0.0
2,911	+				-1.4
2,911	+				+0.2
2,911	+				-0.4
2,911	+				-1.7
2,911	+				-0.3
2,911	+				-0.3
2,912	-				-1.1
2,912	-				-2.3
2,912	-				-0.3
2,912	-				+0.1
2,974	+		GFF1960	0.15	+0.4
2,974	+		GFF1960	0.15	-0.4
2,974	+		GFF1960	0.15	-1.7
2,974	+		GFF1960	0.15	-0.9
2,974	+		GFF1960	0.15	+0.4
2,974	+		GFF1960	0.15	-0.5
2,974	+		GFF1960	0.15	-0.1
2,974	+		GFF1960	0.15	-1.0
2,974	+		GFF1960	0.15	-0.6
2,974	+		GFF1960	0.15	-0.4
2,974	+		GFF1960	0.15	-0.6
2,974	+		GFF1960	0.15	+0.0
2,974	+		GFF1960	0.15	+0.7
2,974	+		GFF1960	0.15	-1.5
2,974	+		GFF1960	0.15	-0.2
2,974	+		GFF1960	0.15	-0.3
2,974	+		GFF1960	0.15	-0.0
2,974	+		GFF1960	0.15	-0.6
2,975	-		GFF1960	0.15	-0.9
2,975	-		GFF1960	0.15	-0.9
2,975	-		GFF1960	0.15	-0.5
2,975	-		GFF1960	0.15	+0.4
2,975	-		GFF1960	0.15	-0.7
2,975	-		GFF1960	0.15	-0.5
2,975	-		GFF1960	0.15	+1.7
2,975	-		GFF1960	0.15	+0.7
2,975	-		GFF1960	0.15	-0.1
2,975	-		GFF1960	0.15	-1.5
2,975	-		GFF1960	0.15	-0.4
2,975	-		GFF1960	0.15	-0.1
2,975	-		GFF1960	0.15	-0.2
2,975	-		GFF1960	0.15	+0.1
2,975	-		GFF1960	0.15	-0.7
2,975	-		GFF1960	0.15	-1.8
2,975	-		GFF1960	0.15	-0.5
2,975	-		GFF1960	0.15	+0.1
2,975	-		GFF1960	0.15	-0.1
2,975	-		GFF1960	0.15	-0.7
2,975	-		GFF1960	0.15	-1.1
2,986	+		GFF1960	0.16	-0.3
2,986	+		GFF1960	0.16	-2.9
2,986	+		GFF1960	0.16	-2.0
2,986	+		GFF1960	0.16	+0.6
2,986	+		GFF1960	0.16	-1.4
2,986	+		GFF1960	0.16	-1.0
2,986	+		GFF1960	0.16	+0.2
2,986	+		GFF1960	0.16	+0.3
2,986	+		GFF1960	0.16	-0.5
2,986	+		GFF1960	0.16	-0.3
2,986	+		GFF1960	0.16	+0.2
2,987	-		GFF1960	0.17	+1.5
2,987	-		GFF1960	0.17	-0.1
2,987	-		GFF1960	0.17	-1.6
2,987	-		GFF1960	0.17	-3.0
2,987	-		GFF1960	0.17	+0.9
2,987	-		GFF1960	0.17	-0.1
2,987	-		GFF1960	0.17	-0.6
2,987	-		GFF1960	0.17	-2.0
2,987	-		GFF1960	0.17	-1.8
2,987	-		GFF1960	0.17	-0.1
2,987	-		GFF1960	0.17	-0.8
2,987	-		GFF1960	0.17	-0.5
3,001	+		GFF1960	0.18	-0.7
3,002	-		GFF1960	0.18	+0.7
3,002	-		GFF1960	0.18	-0.3
3,002	-		GFF1960	0.18	-0.7
3,106	+		GFF1960	0.30	-0.4
3,106	+		GFF1960	0.30	-0.0
3,106	+		GFF1960	0.30	-0.1
3,106	+		GFF1960	0.30	+0.4
3,107	-		GFF1960	0.30	+0.3
3,154	+		GFF1960	0.36	-0.1
3,154	+		GFF1960	0.36	-1.6
3,154	+		GFF1960	0.36	-1.8
3,154	+		GFF1960	0.36	+1.9
3,154	+		GFF1960	0.36	-0.4
3,154	+		GFF1960	0.36	-1.7
3,154	+		GFF1960	0.36	-1.5
3,154	+		GFF1960	0.36	-0.2
3,155	-		GFF1960	0.36	-0.1
3,155	-		GFF1960	0.36	-0.5
3,155	-		GFF1960	0.36	-0.4
3,155	-		GFF1960	0.36	-2.1
3,155	-		GFF1960	0.36	-1.0
3,155	-		GFF1960	0.36	+0.1
3,155	-		GFF1960	0.36	-0.7
3,155	-		GFF1960	0.36	+0.6
3,155	-		GFF1960	0.36	-0.1
3,160	+		GFF1960	0.36	+0.4
3,160	+		GFF1960	0.36	-0.1
3,160	+		GFF1960	0.36	-0.1
3,160	+		GFF1960	0.36	-0.4
3,160	+		GFF1960	0.36	-0.1
3,160	+		GFF1960	0.36	+0.0
3,160	+		GFF1960	0.36	-0.3
3,160	+		GFF1960	0.36	+0.4
3,161	-		GFF1960	0.36	-1.3
3,161	-		GFF1960	0.36	-1.1
3,161	-		GFF1960	0.36	-0.6
3,161	-		GFF1960	0.36	-0.0
3,161	-		GFF1960	0.36	-0.6
3,161	-		GFF1960	0.36	-1.1
3,161	-		GFF1960	0.36	-0.2
3,161	-		GFF1960	0.36	+0.4
3,221	-		GFF1960	0.43	-1.0
3,221	-		GFF1960	0.43	+0.2
3,232	+		GFF1960	0.44	-1.0
3,232	+		GFF1960	0.44	-0.9
3,232	+		GFF1960	0.44	-2.4
3,232	+		GFF1960	0.44	+0.4
3,232	+		GFF1960	0.44	-0.8
3,232	+		GFF1960	0.44	-0.5
3,232	+		GFF1960	0.44	+1.2
3,232	+		GFF1960	0.44	-1.1
3,232	+		GFF1960	0.44	+0.5
3,232	+		GFF1960	0.44	-0.9
3,233	-		GFF1960	0.45	-1.1
3,233	-		GFF1960	0.45	-0.2
3,233	-		GFF1960	0.45	-0.1
3,233	-		GFF1960	0.45	+0.1
3,233	-		GFF1960	0.45	+0.1
3,233	-		GFF1960	0.45	+0.2
3,233	-		GFF1960	0.45	-0.7
3,233	-		GFF1960	0.45	+0.9
3,307	+		GFF1960	0.53	+0.6
3,307	+		GFF1960	0.53	-0.2
3,307	+		GFF1960	0.53	-0.3
3,307	+		GFF1960	0.53	+0.2
3,307	+		GFF1960	0.53	+1.3
3,307	+		GFF1960	0.53	+0.3
3,307	+		GFF1960	0.53	-0.5
3,307	+		GFF1960	0.53	-0.2
3,307	+		GFF1960	0.53	-3.5
3,307	+		GFF1960	0.53	-1.1
3,307	+		GFF1960	0.53	-0.3
3,307	+		GFF1960	0.53	-0.6
3,308	-		GFF1960	0.53	+0.0
3,308	-		GFF1960	0.53	+0.7
3,308	-		GFF1960	0.53	-0.1
3,308	-		GFF1960	0.53	-0.8
3,308	-		GFF1960	0.53	-0.3
3,308	-		GFF1960	0.53	-0.2
3,308	-		GFF1960	0.53	-1.0
3,308	-		GFF1960	0.53	+1.6
3,308	-		GFF1960	0.53	+0.9
3,308	-		GFF1960	0.53	-0.6
3,308	-		GFF1960	0.53	+0.2
3,550	+		GFF1960	0.81	-0.7
3,551	-		GFF1960	0.81	-1.6
3,562	+		GFF1960	0.82	-0.7
3,562	+		GFF1960	0.82	-0.4
3,562	+		GFF1960	0.82	-1.7
3,562	+		GFF1960	0.82	-0.6
3,562	+		GFF1960	0.82	-0.1
3,562	+		GFF1960	0.82	-0.4
3,562	+		GFF1960	0.82	-0.6
3,562	+		GFF1960	0.82	+0.9
3,562	+		GFF1960	0.82	+0.3
3,562	+		GFF1960	0.82	-0.8
3,562	+		GFF1960	0.82	+0.7
3,562	+		GFF1960	0.82	-0.3
3,562	+		GFF1960	0.82	+1.5
3,562	+		GFF1960	0.82	+0.3
3,563	-		GFF1960	0.82	-0.7
3,563	-		GFF1960	0.82	+0.1
3,563	-		GFF1960	0.82	-0.9
3,563	-		GFF1960	0.82	+0.0
3,563	-		GFF1960	0.82	-0.9
3,563	-		GFF1960	0.82	-0.3
3,563	-		GFF1960	0.82	-0.8
3,563	-		GFF1960	0.82	-0.0
3,563	-		GFF1960	0.82	-0.7
3,563	-		GFF1960	0.82	+0.2
3,563	-		GFF1960	0.82	-0.4
3,563	-		GFF1960	0.82	+0.1
3,563	-		GFF1960	0.82	+0.3
3,563	-		GFF1960	0.82	-0.2
3,586	+		GFF1960	0.85	-1.3
3,586	+		GFF1960	0.85	-0.7
3,586	+		GFF1960	0.85	-1.0
3,587	-		GFF1960	0.85	+1.9
3,587	-		GFF1960	0.85	+1.0
3,587	-		GFF1960	0.85	-1.0
3,587	-		GFF1960	0.85	-2.0
3,587	-		GFF1960	0.85	-1.7
3,587	-		GFF1960	0.85	-1.1
3,587	-		GFF1960	0.85	+0.2
3,587	-		GFF1960	0.85	-0.0
3,587	-		GFF1960	0.85	-0.4
3,587	-		GFF1960	0.85	-0.7
3,587	-		GFF1960	0.85	-0.8
3,587	-		GFF1960	0.85	-1.7
3,587	-		GFF1960	0.85	+0.4
3,587	-		GFF1960	0.85	-0.4
3,613	+		GFF1960	0.88	-0.6
3,613	+		GFF1960	0.88	-0.5
3,613	+		GFF1960	0.88	-0.7
3,613	+		GFF1960	0.88	-1.5
3,613	+		GFF1960	0.88	+0.3
3,614	-		GFF1960	0.88	+0.3
3,614	-		GFF1960	0.88	-2.1
3,614	-		GFF1960	0.88	+1.1
3,614	-		GFF1960	0.88	+1.1
3,614	-		GFF1960	0.88	-1.4
3,614	-		GFF1960	0.88	-1.1
3,614	-		GFF1960	0.88	-1.0
3,614	-		GFF1960	0.88	-0.9
3,614	-		GFF1960	0.88	+2.0
3,614	-		GFF1960	0.88	-0.6
3,614	-		GFF1960	0.88	-0.8
3,614	-		GFF1960	0.88	+0.0
3,614	-		GFF1960	0.88	-0.7
3,614	-		GFF1960	0.88	-0.1
3,614	-		GFF1960	0.88	-1.0
3,676	+				-0.3
3,676	+				-0.2
3,676	+				-0.5
3,676	+				+0.9
3,676	+				+2.6
3,677	-				-1.4
3,677	-				-0.6
3,677	-				-0.5
3,677	-				-0.7
3,677	-				-0.5
3,677	-				+0.5
3,677	-				+0.2
3,677	-				-0.3
3,677	-				-0.0
3,747	+				-0.2
3,747	+				-0.6
3,747	+				-2.1
3,747	+				+1.0
3,747	+				-0.7
3,747	+				-0.2
3,747	+				+0.1
3,747	+				-0.3
3,748	-				+0.5
3,748	-				+0.3
3,748	-				-0.7
3,748	-				+1.1
3,748	-				+0.7
3,819	+				-0.3
3,819	+				-0.4
3,819	+				-0.7
3,819	+				-0.1
3,819	+				-1.7
3,819	+				-0.2
3,819	+				-2.8
3,819	+				+1.6
3,820	-				-1.1
3,820	-				+0.1
3,820	-				-0.4
3,820	-				+0.9
3,820	-				-0.3
3,820	-				-1.3
3,870	+		GFF1961	0.15	-0.7
3,871	-		GFF1961	0.16	-0.8
4,119	+		GFF1961	0.47	-1.6
4,119	+		GFF1961	0.47	-1.8
4,119	+		GFF1961	0.47	-0.6
4,119	+		GFF1961	0.47	+0.4
4,119	+		GFF1961	0.47	-0.2
4,119	+		GFF1961	0.47	-1.0
4,119	+		GFF1961	0.47	+0.1
4,119	+		GFF1961	0.47	-1.2
4,119	+		GFF1961	0.47	+0.1
4,120	-		GFF1961	0.47	+0.5
4,120	-		GFF1961	0.47	-1.0
4,120	-		GFF1961	0.47	-0.3
4,170	+		GFF1961	0.53	+0.9
4,170	+		GFF1961	0.53	+0.3
4,170	+		GFF1961	0.53	-0.7
4,170	+		GFF1961	0.53	-1.2
4,170	+		GFF1961	0.53	+0.2
4,170	+		GFF1961	0.53	+1.1
4,170	+		GFF1961	0.53	-0.1
4,170	+		GFF1961	0.53	+0.0
4,170	+		GFF1961	0.53	+2.9
4,170	+		GFF1961	0.53	-2.8
4,170	+		GFF1961	0.53	+0.3
4,171	-		GFF1961	0.53	-0.2
4,171	-		GFF1961	0.53	-0.3
4,171	-		GFF1961	0.53	-0.5
4,171	-		GFF1961	0.53	+1.9
4,171	-		GFF1961	0.53	-0.5
4,171	-		GFF1961	0.53	-3.5
4,171	-		GFF1961	0.53	+0.6
4,171	-		GFF1961	0.53	+0.3
4,171	-		GFF1961	0.53	-1.0
4,171	-		GFF1961	0.53	+0.6
4,171	-		GFF1961	0.53	-0.7
4,171	-		GFF1961	0.53	+0.9
4,171	-		GFF1961	0.53	-0.0
4,171	-		GFF1961	0.53	+0.9
4,171	-		GFF1961	0.53	-0.5
4,171	-		GFF1961	0.53	-0.9
4,171	-		GFF1961	0.53	-0.1
4,171	-		GFF1961	0.53	+0.4
4,171	-		GFF1961	0.53	-1.5
4,171	-		GFF1961	0.53	-0.4
4,171	-		GFF1961	0.53	-0.2
4,171	-		GFF1961	0.53	-2.3
4,171	-		GFF1961	0.53	-0.1
4,389	+		GFF1961	0.80	-0.1
4,389	+		GFF1961	0.80	+0.6
4,389	+		GFF1961	0.80	+0.7
4,389	+		GFF1961	0.80	-0.0
4,389	+		GFF1961	0.80	-0.7
4,389	+		GFF1961	0.80	+0.0
4,390	-		GFF1961	0.80	+0.2
4,390	-		GFF1961	0.80	-1.1
4,390	-		GFF1961	0.80	-1.1
4,390	-		GFF1961	0.80	-1.1
4,390	-		GFF1961	0.80	-0.1
4,390	-		GFF1961	0.80	+0.4
4,390	-		GFF1961	0.80	-0.4
4,390	-		GFF1961	0.80	+0.0
4,390	-		GFF1961	0.80	-0.4
4,577	+				-1.8
4,577	+				+0.3
4,577	+				+0.9
4,578	-				+0.1
4,829	+		GFF1962	0.22	+0.5
4,829	+		GFF1962	0.22	+0.3
4,829	+		GFF1962	0.22	-0.1
4,829	+		GFF1962	0.22	+2.6
4,829	+		GFF1962	0.22	-1.8
4,829	+		GFF1962	0.22	+0.7
4,829	+		GFF1962	0.22	-1.8
4,829	+		GFF1962	0.22	+0.4
4,829	+		GFF1962	0.22	+1.2
4,830	-		GFF1962	0.23	+0.7
4,830	-		GFF1962	0.23	+0.3
4,830	-		GFF1962	0.23	+1.9
4,830	-		GFF1962	0.23	+0.7
4,830	-		GFF1962	0.23	-2.3
4,830	-		GFF1962	0.23	-0.6
4,830	-		GFF1962	0.23	+2.6
4,832	+		GFF1962	0.23	+0.5
4,832	+		GFF1962	0.23	-0.1
4,832	+		GFF1962	0.23	-1.0
4,832	+		GFF1962	0.23	+3.1
4,832	+		GFF1962	0.23	+1.0
4,832	+		GFF1962	0.23	+1.3
4,832	+		GFF1962	0.23	+0.4
4,832	+		GFF1962	0.23	-1.0
4,832	+		GFF1962	0.23	-0.7
4,832	+		GFF1962	0.23	-0.0
4,832	+		GFF1962	0.23	-0.5
4,832	+		GFF1962	0.23	+0.9
4,832	+		GFF1962	0.23	-0.4
4,832	+		GFF1962	0.23	-0.3
4,833	-		GFF1962	0.23	-0.4
4,833	-		GFF1962	0.23	-0.1
4,833	-		GFF1962	0.23	+0.4
4,833	-		GFF1962	0.23	-1.0
4,833	-		GFF1962	0.23	-1.7
4,833	-		GFF1962	0.23	-0.2
4,833	-		GFF1962	0.23	+0.2
4,833	-		GFF1962	0.23	-0.1
4,833	-		GFF1962	0.23	-0.8
4,833	-		GFF1962	0.23	+0.5
4,833	-		GFF1962	0.23	-1.1
4,892	+		GFF1962	0.28	-2.4
4,892	+		GFF1962	0.28	+0.1
4,892	+		GFF1962	0.28	-2.0
4,892	+		GFF1962	0.28	-0.3
4,892	+		GFF1962	0.28	+0.3
4,892	+		GFF1962	0.28	+1.3
4,892	+		GFF1962	0.28	+1.1
4,892	+		GFF1962	0.28	-1.1
4,892	+		GFF1962	0.28	-2.5
4,892	+		GFF1962	0.28	-0.3
4,892	+		GFF1962	0.28	+0.5
4,892	+		GFF1962	0.28	-1.8
4,892	+		GFF1962	0.28	+1.3
4,892	+		GFF1962	0.28	+0.6
4,892	+		GFF1962	0.28	-0.6
4,892	+		GFF1962	0.28	-0.6
4,892	+		GFF1962	0.28	-0.6
4,893	-		GFF1962	0.28	+0.6
4,893	-		GFF1962	0.28	-0.3
4,893	-		GFF1962	0.28	-1.6
4,893	-		GFF1962	0.28	+0.3
4,893	-		GFF1962	0.28	+2.0
4,893	-		GFF1962	0.28	-0.2
4,893	-		GFF1962	0.28	+0.2
4,893	-		GFF1962	0.28	-0.5
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