Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1789 and GFF1790 are separated by 13 nucleotides GFF1790 and GFF1791 overlap by 1 nucleotides GFF1791 and GFF1792 are separated by 142 nucleotides
GFF1789 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 449,487 to 450,257
GFF1789
GFF1790 - Hydroxymethylpyrimidine ABC transporter, ATPase component, at 450,271 to 451,143
GFF1790
GFF1791 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 451,143 to 452,177
GFF1791
GFF1792 - Transcriptional regulator, IclR family, at 452,320 to 453,195
GFF1792
Position (kb) 451
452
453 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 450.377 kb on + strand, within GFF1790 at 450.377 kb on + strand, within GFF1790 at 450.377 kb on + strand, within GFF1790 at 450.458 kb on + strand, within GFF1790 at 450.458 kb on + strand, within GFF1790 at 450.458 kb on + strand, within GFF1790 at 450.459 kb on - strand, within GFF1790 at 450.459 kb on - strand, within GFF1790 at 450.744 kb on - strand, within GFF1790 at 451.064 kb on + strand at 451.201 kb on - strand at 451.523 kb on - strand, within GFF1791 at 451.537 kb on + strand, within GFF1791 at 451.841 kb on - strand, within GFF1791 at 451.841 kb on - strand, within GFF1791 at 452.018 kb on - strand, within GFF1791 at 452.116 kb on - strand at 452.116 kb on - strand at 452.351 kb on + strand at 452.352 kb on - strand at 452.352 kb on - strand at 452.465 kb on + strand, within GFF1792 at 452.465 kb on + strand, within GFF1792 at 452.466 kb on - strand, within GFF1792 at 452.466 kb on - strand, within GFF1792 at 452.525 kb on + strand, within GFF1792 at 452.525 kb on + strand, within GFF1792 at 452.526 kb on - strand, within GFF1792 at 452.526 kb on - strand, within GFF1792 at 452.526 kb on - strand, within GFF1792 at 452.729 kb on + strand, within GFF1792 at 452.729 kb on + strand, within GFF1792 at 452.729 kb on + strand, within GFF1792 at 452.729 kb on + strand, within GFF1792 at 452.730 kb on - strand, within GFF1792 at 452.730 kb on - strand, within GFF1792 at 452.730 kb on - strand, within GFF1792 at 452.730 kb on - strand, within GFF1792 at 452.730 kb on - strand, within GFF1792 at 452.801 kb on + strand, within GFF1792 at 452.801 kb on + strand, within GFF1792 at 452.801 kb on + strand, within GFF1792 at 452.802 kb on - strand, within GFF1792 at 452.802 kb on - strand, within GFF1792 at 452.885 kb on + strand, within GFF1792 at 452.885 kb on + strand, within GFF1792 at 452.886 kb on - strand, within GFF1792 at 452.886 kb on - strand, within GFF1792 at 452.918 kb on + strand, within GFF1792 at 453.094 kb on - strand, within GFF1792 at 453.094 kb on - strand, within GFF1792 at 453.094 kb on - strand, within GFF1792 at 453.094 kb on - strand, within GFF1792 at 453.094 kb on - strand, within GFF1792 at 453.094 kb on - strand, within GFF1792 at 453.094 kb on - strand, within GFF1792 at 453.123 kb on + strand at 453.123 kb on + strand at 453.123 kb on + strand at 453.123 kb on + strand at 453.123 kb on + strand at 453.123 kb on + strand at 453.124 kb on - strand at 453.124 kb on - strand at 453.124 kb on - strand at 453.124 kb on - strand at 453.124 kb on - strand at 453.124 kb on - strand at 453.124 kb on - strand at 453.124 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 450,377 + GFF1790 0.12 -0.7 450,377 + GFF1790 0.12 -0.5 450,377 + GFF1790 0.12 -0.1 450,458 + GFF1790 0.21 +1.5 450,458 + GFF1790 0.21 -0.5 450,458 + GFF1790 0.21 +0.8 450,459 - GFF1790 0.22 +0.1 450,459 - GFF1790 0.22 -0.9 450,744 - GFF1790 0.54 +0.4 451,064 + +0.1 451,201 - -0.6 451,523 - GFF1791 0.37 -0.7 451,537 + GFF1791 0.38 -1.1 451,841 - GFF1791 0.67 +0.5 451,841 - GFF1791 0.67 -0.5 452,018 - GFF1791 0.85 +0.4 452,116 - +0.3 452,116 - -1.3 452,351 + -0.1 452,352 - -0.3 452,352 - -1.3 452,465 + GFF1792 0.17 +0.3 452,465 + GFF1792 0.17 -0.6 452,466 - GFF1792 0.17 -1.2 452,466 - GFF1792 0.17 +0.1 452,525 + GFF1792 0.23 -1.8 452,525 + GFF1792 0.23 -0.9 452,526 - GFF1792 0.24 +0.7 452,526 - GFF1792 0.24 -0.1 452,526 - GFF1792 0.24 -1.2 452,729 + GFF1792 0.47 +0.3 452,729 + GFF1792 0.47 -0.8 452,729 + GFF1792 0.47 +1.3 452,729 + GFF1792 0.47 +0.7 452,730 - GFF1792 0.47 -0.4 452,730 - GFF1792 0.47 +0.4 452,730 - GFF1792 0.47 +0.7 452,730 - GFF1792 0.47 +0.5 452,730 - GFF1792 0.47 -2.2 452,801 + GFF1792 0.55 -0.8 452,801 + GFF1792 0.55 -0.7 452,801 + GFF1792 0.55 -0.5 452,802 - GFF1792 0.55 -0.4 452,802 - GFF1792 0.55 -0.7 452,885 + GFF1792 0.64 -0.2 452,885 + GFF1792 0.64 +0.2 452,886 - GFF1792 0.65 -0.4 452,886 - GFF1792 0.65 -1.2 452,918 + GFF1792 0.68 -2.0 453,094 - GFF1792 0.88 -1.8 453,094 - GFF1792 0.88 +3.0 453,094 - GFF1792 0.88 -2.2 453,094 - GFF1792 0.88 -0.2 453,094 - GFF1792 0.88 -1.3 453,094 - GFF1792 0.88 -0.7 453,094 - GFF1792 0.88 +0.1 453,123 + +0.4 453,123 + +1.6 453,123 + -0.9 453,123 + +0.5 453,123 + +0.6 453,123 + -0.0 453,124 - +1.4 453,124 - +0.6 453,124 - -0.1 453,124 - +0.6 453,124 - -0.5 453,124 - -0.6 453,124 - -0.7 453,124 - +0.0
Or see this region's nucleotide sequence