Strain Fitness in Variovorax sp. SCN45 around GFF1652

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1650 and GFF1651 are separated by 96 nucleotidesGFF1651 and GFF1652 are separated by 29 nucleotidesGFF1652 and GFF1653 are separated by 264 nucleotides GFF1650 - NmrA-like, at 289,696 to 290,781 GFF1650 GFF1651 - Transcriptional regulator, AcrR family, at 290,878 to 291,465 GFF1651 GFF1652 - Uncharacterized MFS-type transporter, at 291,495 to 292,736 GFF1652 GFF1653 - Transcriptional regulator, AcrR family, at 293,001 to 293,738 GFF1653 Position (kb) 291 292 293Strain fitness (log2 ratio) -2 -1 0 1 2at 290.510 kb on - strand, within GFF1650at 290.605 kb on + strand, within GFF1650at 290.605 kb on + strand, within GFF1650at 290.605 kb on + strand, within GFF1650at 290.605 kb on + strand, within GFF1650at 290.606 kb on - strand, within GFF1650at 290.606 kb on - strand, within GFF1650at 290.606 kb on - strand, within GFF1650at 290.606 kb on - strand, within GFF1650at 290.779 kb on + strandat 290.779 kb on + strandat 290.779 kb on + strandat 290.779 kb on + strandat 290.811 kb on + strandat 290.885 kb on - strandat 290.960 kb on + strand, within GFF1651at 290.961 kb on - strand, within GFF1651at 291.019 kb on + strand, within GFF1651at 291.019 kb on + strand, within GFF1651at 291.019 kb on + strand, within GFF1651at 291.154 kb on + strand, within GFF1651at 291.155 kb on - strand, within GFF1651at 291.155 kb on - strand, within GFF1651at 291.155 kb on - strand, within GFF1651at 291.320 kb on + strand, within GFF1651at 291.321 kb on - strand, within GFF1651at 291.321 kb on - strand, within GFF1651at 291.403 kb on + strand, within GFF1651at 291.404 kb on - strand, within GFF1651at 291.463 kb on + strandat 291.463 kb on + strandat 291.463 kb on + strandat 291.464 kb on - strandat 291.464 kb on - strandat 291.464 kb on - strandat 291.464 kb on - strandat 291.496 kb on + strandat 291.496 kb on + strandat 291.496 kb on + strandat 291.496 kb on + strandat 291.497 kb on - strandat 291.497 kb on - strandat 291.497 kb on - strandat 291.685 kb on - strand, within GFF1652at 291.822 kb on + strand, within GFF1652at 291.823 kb on - strand, within GFF1652at 291.911 kb on - strand, within GFF1652at 291.947 kb on - strand, within GFF1652at 292.167 kb on + strand, within GFF1652at 292.168 kb on - strand, within GFF1652at 292.168 kb on - strand, within GFF1652at 292.207 kb on + strand, within GFF1652at 292.207 kb on + strand, within GFF1652at 292.207 kb on + strand, within GFF1652at 292.207 kb on + strand, within GFF1652at 292.207 kb on + strand, within GFF1652at 292.207 kb on + strand, within GFF1652at 292.208 kb on - strand, within GFF1652at 292.208 kb on - strand, within GFF1652at 292.208 kb on - strand, within GFF1652at 292.208 kb on - strand, within GFF1652at 292.208 kb on - strand, within GFF1652at 292.208 kb on - strand, within GFF1652at 292.208 kb on - strand, within GFF1652at 292.316 kb on - strand, within GFF1652at 292.342 kb on + strand, within GFF1652at 292.342 kb on + strand, within GFF1652at 292.342 kb on + strand, within GFF1652at 292.342 kb on + strand, within GFF1652at 292.342 kb on + strand, within GFF1652at 292.342 kb on + strand, within GFF1652at 292.342 kb on + strand, within GFF1652at 292.342 kb on + strand, within GFF1652at 292.343 kb on - strand, within GFF1652at 292.343 kb on - strand, within GFF1652at 292.343 kb on - strand, within GFF1652at 292.343 kb on - strand, within GFF1652at 292.343 kb on - strand, within GFF1652at 292.343 kb on - strand, within GFF1652at 292.343 kb on - strand, within GFF1652at 292.343 kb on - strand, within GFF1652at 292.363 kb on + strand, within GFF1652at 292.364 kb on - strand, within GFF1652at 292.364 kb on - strand, within GFF1652at 292.676 kb on + strandat 292.676 kb on + strandat 292.859 kb on + strandat 292.860 kb on - strandat 292.960 kb on + strandat 293.286 kb on + strand, within GFF1653at 293.287 kb on - strand, within GFF1653at 293.334 kb on + strand, within GFF1653at 293.335 kb on - strand, within GFF1653at 293.335 kb on - strand, within GFF1653at 293.335 kb on - strand, within GFF1653at 293.448 kb on + strand, within GFF1653at 293.448 kb on + strand, within GFF1653at 293.448 kb on + strand, within GFF1653at 293.449 kb on - strand, within GFF1653at 293.449 kb on - strand, within GFF1653at 293.449 kb on - strand, within GFF1653at 293.454 kb on + strand, within GFF1653at 293.454 kb on + strand, within GFF1653at 293.454 kb on + strand, within GFF1653at 293.454 kb on + strand, within GFF1653at 293.454 kb on + strand, within GFF1653at 293.454 kb on + strand, within GFF1653at 293.454 kb on + strand, within GFF1653at 293.455 kb on - strand, within GFF1653at 293.455 kb on - strand, within GFF1653at 293.455 kb on - strand, within GFF1653at 293.455 kb on - strand, within GFF1653at 293.455 kb on - strand, within GFF1653at 293.455 kb on - strand, within GFF1653at 293.455 kb on - strand, within GFF1653at 293.547 kb on + strand, within GFF1653at 293.548 kb on - strand, within GFF1653at 293.548 kb on - strand, within GFF1653

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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290,510 - GFF1650 0.75 -0.5
290,605 + GFF1650 0.84 -1.6
290,605 + GFF1650 0.84 -0.3
290,605 + GFF1650 0.84 +1.6
290,605 + GFF1650 0.84 -1.0
290,606 - GFF1650 0.84 -0.3
290,606 - GFF1650 0.84 +0.2
290,606 - GFF1650 0.84 +1.4
290,606 - GFF1650 0.84 -1.3
290,779 + -0.8
290,779 + -0.5
290,779 + +0.4
290,779 + +0.6
290,811 + +0.7
290,885 - +0.2
290,960 + GFF1651 0.14 -0.6
290,961 - GFF1651 0.14 +0.2
291,019 + GFF1651 0.24 -0.0
291,019 + GFF1651 0.24 -0.5
291,019 + GFF1651 0.24 -0.4
291,154 + GFF1651 0.47 -0.0
291,155 - GFF1651 0.47 -0.2
291,155 - GFF1651 0.47 -0.8
291,155 - GFF1651 0.47 +0.9
291,320 + GFF1651 0.75 -1.1
291,321 - GFF1651 0.75 -0.1
291,321 - GFF1651 0.75 +0.1
291,403 + GFF1651 0.89 +0.8
291,404 - GFF1651 0.89 +0.3
291,463 + +0.5
291,463 + -0.5
291,463 + -0.1
291,464 - -1.5
291,464 - +0.8
291,464 - -0.5
291,464 - -0.7
291,496 + -0.3
291,496 + -0.5
291,496 + -0.8
291,496 + +1.6
291,497 - -0.5
291,497 - -0.6
291,497 - -0.5
291,685 - GFF1652 0.15 -0.3
291,822 + GFF1652 0.26 -0.2
291,823 - GFF1652 0.26 +1.6
291,911 - GFF1652 0.33 +0.2
291,947 - GFF1652 0.36 +0.5
292,167 + GFF1652 0.54 -0.6
292,168 - GFF1652 0.54 +0.2
292,168 - GFF1652 0.54 +0.4
292,207 + GFF1652 0.57 -0.3
292,207 + GFF1652 0.57 +0.2
292,207 + GFF1652 0.57 +0.2
292,207 + GFF1652 0.57 -0.2
292,207 + GFF1652 0.57 +0.1
292,207 + GFF1652 0.57 -2.7
292,208 - GFF1652 0.57 +0.2
292,208 - GFF1652 0.57 -1.8
292,208 - GFF1652 0.57 +0.2
292,208 - GFF1652 0.57 +0.8
292,208 - GFF1652 0.57 +0.1
292,208 - GFF1652 0.57 +0.2
292,208 - GFF1652 0.57 +0.8
292,316 - GFF1652 0.66 -2.3
292,342 + GFF1652 0.68 +0.4
292,342 + GFF1652 0.68 +0.8
292,342 + GFF1652 0.68 -0.8
292,342 + GFF1652 0.68 -2.2
292,342 + GFF1652 0.68 -0.4
292,342 + GFF1652 0.68 +0.4
292,342 + GFF1652 0.68 -0.8
292,342 + GFF1652 0.68 -1.0
292,343 - GFF1652 0.68 +0.3
292,343 - GFF1652 0.68 -0.3
292,343 - GFF1652 0.68 -0.7
292,343 - GFF1652 0.68 -1.5
292,343 - GFF1652 0.68 -1.2
292,343 - GFF1652 0.68 -1.4
292,343 - GFF1652 0.68 -0.4
292,343 - GFF1652 0.68 +0.7
292,363 + GFF1652 0.70 -0.8
292,364 - GFF1652 0.70 +1.0
292,364 - GFF1652 0.70 -1.9
292,676 + +0.5
292,676 + +0.0
292,859 + +0.3
292,860 - -0.9
292,960 + -0.3
293,286 + GFF1653 0.39 +0.1
293,287 - GFF1653 0.39 +0.5
293,334 + GFF1653 0.45 -0.1
293,335 - GFF1653 0.45 -0.2
293,335 - GFF1653 0.45 +1.6
293,335 - GFF1653 0.45 +0.3
293,448 + GFF1653 0.61 +0.6
293,448 + GFF1653 0.61 -0.3
293,448 + GFF1653 0.61 -0.2
293,449 - GFF1653 0.61 -2.1
293,449 - GFF1653 0.61 -1.5
293,449 - GFF1653 0.61 -0.2
293,454 + GFF1653 0.61 -0.6
293,454 + GFF1653 0.61 -1.9
293,454 + GFF1653 0.61 -1.2
293,454 + GFF1653 0.61 -1.2
293,454 + GFF1653 0.61 -0.4
293,454 + GFF1653 0.61 +0.3
293,454 + GFF1653 0.61 -1.2
293,455 - GFF1653 0.62 +2.2
293,455 - GFF1653 0.62 +0.1
293,455 - GFF1653 0.62 -1.3
293,455 - GFF1653 0.62 +0.8
293,455 - GFF1653 0.62 +2.1
293,455 - GFF1653 0.62 +0.1
293,455 - GFF1653 0.62 +0.8
293,547 + GFF1653 0.74 -1.1
293,548 - GFF1653 0.74 -0.5
293,548 - GFF1653 0.74 +0.7

Or see this region's nucleotide sequence