Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1635 and GFF1636 are separated by 56 nucleotides GFF1636 and GFF1637 are separated by 84 nucleotides
GFF1635 - Polyketide synthase modules and related proteins, at 238,398 to 256,793
GFF1635
GFF1636 - Non-ribosomal peptide synthetase modules, pyoverdine @ Siderophore biosynthesis non-ribosomal peptide synthetase modules, at 256,850 to 260,152
GFF1636
GFF1637 - Polyketide synthase modules and related proteins, at 260,237 to 264,835
GFF1637
Position (kb) 256
257
258
259
260
261 Strain fitness (log2 ratio) -2
-1
0
1 at 255.899 kb on + strand at 256.166 kb on - strand at 256.175 kb on - strand at 256.229 kb on - strand at 256.675 kb on + strand at 256.675 kb on + strand at 256.765 kb on + strand at 256.873 kb on + strand at 256.970 kb on + strand at 256.970 kb on + strand at 256.970 kb on + strand at 256.970 kb on + strand at 256.970 kb on + strand at 256.971 kb on - strand at 256.971 kb on - strand at 256.971 kb on - strand at 256.971 kb on - strand at 256.971 kb on - strand at 257.062 kb on - strand at 257.328 kb on + strand, within GFF1636 at 257.328 kb on + strand, within GFF1636 at 257.328 kb on + strand, within GFF1636 at 257.328 kb on + strand, within GFF1636 at 257.595 kb on + strand, within GFF1636 at 257.595 kb on + strand, within GFF1636 at 258.363 kb on + strand, within GFF1636 at 258.363 kb on + strand, within GFF1636 at 258.363 kb on + strand, within GFF1636 at 258.364 kb on - strand, within GFF1636 at 258.405 kb on + strand, within GFF1636 at 258.406 kb on - strand, within GFF1636 at 258.552 kb on + strand, within GFF1636 at 258.552 kb on + strand, within GFF1636 at 258.552 kb on + strand, within GFF1636 at 258.952 kb on - strand, within GFF1636 at 259.132 kb on + strand, within GFF1636 at 259.133 kb on - strand, within GFF1636 at 259.133 kb on - strand, within GFF1636 at 259.196 kb on + strand, within GFF1636 at 259.196 kb on + strand, within GFF1636 at 259.197 kb on - strand, within GFF1636 at 259.197 kb on - strand, within GFF1636 at 259.197 kb on - strand, within GFF1636 at 259.221 kb on + strand, within GFF1636 at 259.221 kb on + strand, within GFF1636 at 259.222 kb on - strand, within GFF1636 at 259.270 kb on + strand, within GFF1636 at 259.350 kb on + strand, within GFF1636 at 259.603 kb on + strand, within GFF1636 at 259.603 kb on + strand, within GFF1636 at 259.604 kb on - strand, within GFF1636 at 259.865 kb on + strand at 259.866 kb on - strand at 259.941 kb on + strand at 259.942 kb on - strand at 260.220 kb on - strand at 260.845 kb on - strand, within GFF1637
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 255,899 + -0.4 256,166 - -0.0 256,175 - -0.3 256,229 - -0.4 256,675 + +0.1 256,675 + +0.0 256,765 + +0.2 256,873 + -0.2 256,970 + -0.0 256,970 + +0.2 256,970 + -0.3 256,970 + -0.1 256,970 + -0.8 256,971 - +0.9 256,971 - -0.5 256,971 - -1.0 256,971 - +0.5 256,971 - -1.8 257,062 - -0.2 257,328 + GFF1636 0.14 +0.8 257,328 + GFF1636 0.14 +0.5 257,328 + GFF1636 0.14 -0.1 257,328 + GFF1636 0.14 +0.2 257,595 + GFF1636 0.23 -1.0 257,595 + GFF1636 0.23 +0.6 258,363 + GFF1636 0.46 -0.3 258,363 + GFF1636 0.46 -0.8 258,363 + GFF1636 0.46 -0.1 258,364 - GFF1636 0.46 +0.6 258,405 + GFF1636 0.47 +0.3 258,406 - GFF1636 0.47 +0.2 258,552 + GFF1636 0.52 -0.6 258,552 + GFF1636 0.52 +0.7 258,552 + GFF1636 0.52 +0.5 258,952 - GFF1636 0.64 -0.1 259,132 + GFF1636 0.69 -1.9 259,133 - GFF1636 0.69 -1.0 259,133 - GFF1636 0.69 -0.1 259,196 + GFF1636 0.71 -2.0 259,196 + GFF1636 0.71 +0.6 259,197 - GFF1636 0.71 -0.4 259,197 - GFF1636 0.71 -0.8 259,197 - GFF1636 0.71 +0.1 259,221 + GFF1636 0.72 +0.6 259,221 + GFF1636 0.72 +0.1 259,222 - GFF1636 0.72 -0.5 259,270 + GFF1636 0.73 -0.0 259,350 + GFF1636 0.76 -1.5 259,603 + GFF1636 0.83 -0.1 259,603 + GFF1636 0.83 +0.8 259,604 - GFF1636 0.83 +1.0 259,865 + +0.3 259,866 - +0.2 259,941 + +0.6 259,942 - +0.2 260,220 - -0.7 260,845 - GFF1637 0.13 +0.6
Or see this region's nucleotide sequence