Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1551 and GFF1552 are separated by 1 nucleotides GFF1552 and GFF1553 are separated by 93 nucleotides GFF1553 and GFF1554 are separated by 123 nucleotides
GFF1551 - hypothetical protein, at 149,829 to 151,268
GFF1551
GFF1552 - Phosphate regulon transcriptional regulatory protein PhoB (SphR), at 151,270 to 152,079
GFF1552
GFF1553 - no description, at 152,173 to 152,718
GFF1553
GFF1554 - no description, at 152,842 to 153,189
GFF1554
Position (kb) 151
152
153 Strain fitness (log2 ratio) -2
-1
0
1
2 at 150.298 kb on + strand, within GFF1551 at 150.298 kb on + strand, within GFF1551 at 150.299 kb on - strand, within GFF1551 at 150.299 kb on - strand, within GFF1551 at 150.299 kb on - strand, within GFF1551 at 150.299 kb on - strand, within GFF1551 at 150.661 kb on + strand, within GFF1551 at 150.661 kb on + strand, within GFF1551 at 150.661 kb on + strand, within GFF1551 at 150.662 kb on - strand, within GFF1551 at 150.662 kb on - strand, within GFF1551 at 150.662 kb on - strand, within GFF1551 at 150.662 kb on - strand, within GFF1551 at 150.676 kb on + strand, within GFF1551 at 150.677 kb on - strand, within GFF1551 at 150.765 kb on + strand, within GFF1551 at 150.766 kb on - strand, within GFF1551 at 151.169 kb on + strand at 151.170 kb on - strand at 151.304 kb on + strand at 151.305 kb on - strand at 151.691 kb on + strand, within GFF1552 at 151.691 kb on + strand, within GFF1552 at 151.692 kb on - strand, within GFF1552 at 151.692 kb on - strand, within GFF1552 at 151.907 kb on + strand, within GFF1552 at 151.926 kb on - strand, within GFF1552 at 152.117 kb on + strand at 152.118 kb on - strand at 152.281 kb on + strand, within GFF1553 at 152.359 kb on + strand, within GFF1553 at 152.360 kb on - strand, within GFF1553 at 152.395 kb on + strand, within GFF1553 at 152.395 kb on + strand, within GFF1553 at 152.395 kb on + strand, within GFF1553 at 152.395 kb on + strand, within GFF1553 at 152.396 kb on - strand, within GFF1553 at 152.396 kb on - strand, within GFF1553 at 152.396 kb on - strand, within GFF1553 at 152.396 kb on - strand, within GFF1553 at 152.548 kb on + strand, within GFF1553 at 152.548 kb on + strand, within GFF1553 at 152.548 kb on + strand, within GFF1553 at 152.549 kb on - strand, within GFF1553 at 152.672 kb on - strand at 152.679 kb on + strand at 152.689 kb on - strand at 152.697 kb on + strand at 152.697 kb on + strand at 152.698 kb on - strand at 152.698 kb on - strand at 152.733 kb on + strand at 152.734 kb on - strand at 152.734 kb on - strand at 153.032 kb on + strand, within GFF1554
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 150,298 + GFF1551 0.33 -0.6 150,298 + GFF1551 0.33 +1.0 150,299 - GFF1551 0.33 +0.8 150,299 - GFF1551 0.33 -0.5 150,299 - GFF1551 0.33 +0.4 150,299 - GFF1551 0.33 -0.4 150,661 + GFF1551 0.58 +0.8 150,661 + GFF1551 0.58 -0.1 150,661 + GFF1551 0.58 -0.1 150,662 - GFF1551 0.58 -0.2 150,662 - GFF1551 0.58 +0.2 150,662 - GFF1551 0.58 -1.4 150,662 - GFF1551 0.58 +0.7 150,676 + GFF1551 0.59 -1.8 150,677 - GFF1551 0.59 -0.7 150,765 + GFF1551 0.65 -1.0 150,766 - GFF1551 0.65 +0.3 151,169 + -1.1 151,170 - +0.1 151,304 + +0.5 151,305 - -0.1 151,691 + GFF1552 0.52 +0.0 151,691 + GFF1552 0.52 +1.0 151,692 - GFF1552 0.52 -0.8 151,692 - GFF1552 0.52 +0.4 151,907 + GFF1552 0.79 -1.4 151,926 - GFF1552 0.81 +0.7 152,117 + -2.2 152,118 - -1.0 152,281 + GFF1553 0.20 -0.2 152,359 + GFF1553 0.34 -1.6 152,360 - GFF1553 0.34 +2.0 152,395 + GFF1553 0.41 +0.2 152,395 + GFF1553 0.41 -1.4 152,395 + GFF1553 0.41 +0.2 152,395 + GFF1553 0.41 +1.2 152,396 - GFF1553 0.41 -0.8 152,396 - GFF1553 0.41 -0.2 152,396 - GFF1553 0.41 -1.8 152,396 - GFF1553 0.41 -0.5 152,548 + GFF1553 0.69 +0.8 152,548 + GFF1553 0.69 -0.5 152,548 + GFF1553 0.69 +1.5 152,549 - GFF1553 0.69 -0.3 152,672 - -0.9 152,679 + -0.2 152,689 - +0.4 152,697 + -0.4 152,697 + +1.2 152,698 - -0.6 152,698 - +0.2 152,733 + +0.2 152,734 - -0.2 152,734 - +0.5 153,032 + GFF1554 0.55 -1.0
Or see this region's nucleotide sequence