Strain Fitness in Variovorax sp. SCN45 around GFF1217

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1216 and GFF1217 overlap by 4 nucleotidesGFF1217 and GFF1218 are separated by 207 nucleotides GFF1216 - Isoaspartyl aminopeptidase (EC 3.4.19.5) @ Asp-X dipeptidase, at 536,171 to 537,142 GFF1216 GFF1217 - Transcriptional regulator RpiR in protein degradation cluster, at 537,139 to 538,140 GFF1217 GFF1218 - O-antigen acetylase, at 538,348 to 539,502 GFF1218 Position (kb) 537 538 539Strain fitness (log2 ratio) -2 -1 0 1 2at 536.223 kb on + strandat 536.223 kb on + strandat 536.223 kb on + strandat 536.223 kb on + strandat 536.223 kb on + strandat 536.223 kb on + strandat 536.223 kb on + strandat 536.224 kb on - strandat 536.224 kb on - strandat 536.224 kb on - strandat 536.224 kb on - strandat 536.383 kb on - strand, within GFF1216at 536.383 kb on - strand, within GFF1216at 536.454 kb on + strand, within GFF1216at 536.454 kb on + strand, within GFF1216at 536.455 kb on - strand, within GFF1216at 536.455 kb on - strand, within GFF1216at 536.455 kb on - strand, within GFF1216at 536.825 kb on + strand, within GFF1216at 536.825 kb on + strand, within GFF1216at 536.825 kb on + strand, within GFF1216at 536.825 kb on + strand, within GFF1216at 536.825 kb on + strand, within GFF1216at 536.826 kb on - strand, within GFF1216at 536.826 kb on - strand, within GFF1216at 536.826 kb on - strand, within GFF1216at 536.826 kb on - strand, within GFF1216at 536.826 kb on - strand, within GFF1216at 537.051 kb on + strandat 537.052 kb on - strandat 537.052 kb on - strandat 537.052 kb on - strandat 537.231 kb on + strandat 537.231 kb on + strandat 537.231 kb on + strandat 537.231 kb on + strandat 537.231 kb on + strandat 537.231 kb on + strandat 537.232 kb on - strandat 537.232 kb on - strandat 537.232 kb on - strandat 537.232 kb on - strandat 537.401 kb on + strand, within GFF1217at 537.401 kb on + strand, within GFF1217at 537.402 kb on - strand, within GFF1217at 537.537 kb on - strand, within GFF1217at 537.710 kb on + strand, within GFF1217at 537.710 kb on + strand, within GFF1217at 537.710 kb on + strand, within GFF1217at 537.710 kb on + strand, within GFF1217at 537.711 kb on - strand, within GFF1217at 537.711 kb on - strand, within GFF1217at 537.761 kb on + strand, within GFF1217at 537.761 kb on + strand, within GFF1217at 537.761 kb on + strand, within GFF1217at 537.762 kb on - strand, within GFF1217at 537.762 kb on - strand, within GFF1217at 537.927 kb on - strand, within GFF1217at 537.927 kb on - strand, within GFF1217at 538.043 kb on + strandat 538.043 kb on + strandat 538.043 kb on + strandat 538.043 kb on + strandat 538.044 kb on - strandat 538.044 kb on - strandat 538.044 kb on - strandat 538.044 kb on - strandat 538.044 kb on - strandat 538.044 kb on - strandat 538.193 kb on + strandat 538.243 kb on - strandat 538.243 kb on - strandat 538.311 kb on + strandat 538.311 kb on + strandat 538.312 kb on - strandat 538.312 kb on - strandat 538.312 kb on - strandat 538.312 kb on - strandat 538.312 kb on - strandat 538.334 kb on + strandat 538.334 kb on + strandat 538.453 kb on + strandat 538.453 kb on + strandat 538.528 kb on + strand, within GFF1218at 538.528 kb on + strand, within GFF1218at 538.528 kb on + strand, within GFF1218at 538.529 kb on - strand, within GFF1218at 538.561 kb on + strand, within GFF1218at 538.562 kb on - strand, within GFF1218at 538.562 kb on - strand, within GFF1218at 538.591 kb on + strand, within GFF1218at 538.627 kb on + strand, within GFF1218at 538.627 kb on + strand, within GFF1218at 538.627 kb on + strand, within GFF1218at 538.627 kb on + strand, within GFF1218at 538.627 kb on + strand, within GFF1218at 538.628 kb on - strand, within GFF1218at 538.628 kb on - strand, within GFF1218at 538.628 kb on - strand, within GFF1218at 538.628 kb on - strand, within GFF1218at 538.825 kb on + strand, within GFF1218at 538.825 kb on + strand, within GFF1218at 538.825 kb on + strand, within GFF1218at 538.840 kb on + strand, within GFF1218at 538.840 kb on + strand, within GFF1218at 538.840 kb on + strand, within GFF1218at 538.840 kb on + strand, within GFF1218at 538.840 kb on + strand, within GFF1218at 538.840 kb on + strand, within GFF1218at 538.840 kb on + strand, within GFF1218at 538.840 kb on + strand, within GFF1218at 538.841 kb on - strand, within GFF1218at 538.841 kb on - strand, within GFF1218at 538.841 kb on - strand, within GFF1218at 538.841 kb on - strand, within GFF1218at 538.841 kb on - strand, within GFF1218at 538.841 kb on - strand, within GFF1218at 538.870 kb on + strand, within GFF1218at 538.870 kb on + strand, within GFF1218at 538.870 kb on + strand, within GFF1218at 538.870 kb on + strand, within GFF1218at 538.871 kb on - strand, within GFF1218at 538.871 kb on - strand, within GFF1218at 538.928 kb on + strand, within GFF1218at 538.929 kb on - strand, within GFF1218at 538.929 kb on - strand, within GFF1218at 538.990 kb on + strand, within GFF1218at 538.990 kb on + strand, within GFF1218at 538.990 kb on + strand, within GFF1218at 538.990 kb on + strand, within GFF1218at 538.990 kb on + strand, within GFF1218at 538.990 kb on + strand, within GFF1218at 538.990 kb on + strand, within GFF1218at 538.990 kb on + strand, within GFF1218at 538.991 kb on - strand, within GFF1218at 538.991 kb on - strand, within GFF1218at 538.991 kb on - strand, within GFF1218at 538.991 kb on - strand, within GFF1218at 538.991 kb on - strand, within GFF1218at 538.999 kb on + strand, within GFF1218at 538.999 kb on + strand, within GFF1218at 538.999 kb on + strand, within GFF1218at 538.999 kb on + strand, within GFF1218at 538.999 kb on + strand, within GFF1218at 538.999 kb on + strand, within GFF1218at 538.999 kb on + strand, within GFF1218at 538.999 kb on + strand, within GFF1218at 538.999 kb on + strand, within GFF1218at 538.999 kb on + strand, within GFF1218at 538.999 kb on + strand, within GFF1218at 538.999 kb on + strand, within GFF1218at 538.999 kb on + strand, within GFF1218at 538.999 kb on + strand, within GFF1218at 538.999 kb on + strand, within GFF1218at 539.000 kb on - strand, within GFF1218at 539.000 kb on - strand, within GFF1218at 539.000 kb on - strand, within GFF1218at 539.000 kb on - strand, within GFF1218at 539.000 kb on - strand, within GFF1218at 539.000 kb on - strand, within GFF1218at 539.000 kb on - strand, within GFF1218at 539.001 kb on - strand, within GFF1218at 539.131 kb on + strand, within GFF1218at 539.131 kb on + strand, within GFF1218at 539.131 kb on + strand, within GFF1218at 539.132 kb on - strand, within GFF1218at 539.132 kb on - strand, within GFF1218at 539.132 kb on - strand, within GFF1218

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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536,223 + -0.7
536,223 + -0.4
536,223 + +0.3
536,223 + -1.0
536,223 + -0.1
536,223 + -0.7
536,223 + -0.8
536,224 - -0.4
536,224 - +0.2
536,224 - -1.0
536,224 - -0.4
536,383 - GFF1216 0.22 -0.2
536,383 - GFF1216 0.22 +0.2
536,454 + GFF1216 0.29 +0.6
536,454 + GFF1216 0.29 -1.1
536,455 - GFF1216 0.29 -0.8
536,455 - GFF1216 0.29 +0.8
536,455 - GFF1216 0.29 -1.2
536,825 + GFF1216 0.67 -0.2
536,825 + GFF1216 0.67 +0.7
536,825 + GFF1216 0.67 +0.5
536,825 + GFF1216 0.67 +0.8
536,825 + GFF1216 0.67 -0.5
536,826 - GFF1216 0.67 -0.1
536,826 - GFF1216 0.67 +0.3
536,826 - GFF1216 0.67 +0.5
536,826 - GFF1216 0.67 -0.1
536,826 - GFF1216 0.67 -0.2
537,051 + -0.4
537,052 - -1.1
537,052 - -0.2
537,052 - -1.0
537,231 + -0.9
537,231 + -0.1
537,231 + +0.2
537,231 + -0.3
537,231 + +0.5
537,231 + +0.1
537,232 - -2.2
537,232 - -0.6
537,232 - -0.4
537,232 - -0.5
537,401 + GFF1217 0.26 -0.1
537,401 + GFF1217 0.26 -0.4
537,402 - GFF1217 0.26 +0.2
537,537 - GFF1217 0.40 -1.1
537,710 + GFF1217 0.57 -0.4
537,710 + GFF1217 0.57 +1.0
537,710 + GFF1217 0.57 +0.8
537,710 + GFF1217 0.57 -0.3
537,711 - GFF1217 0.57 -0.3
537,711 - GFF1217 0.57 -0.1
537,761 + GFF1217 0.62 -1.3
537,761 + GFF1217 0.62 -0.7
537,761 + GFF1217 0.62 +0.6
537,762 - GFF1217 0.62 -0.4
537,762 - GFF1217 0.62 -1.9
537,927 - GFF1217 0.79 -0.2
537,927 - GFF1217 0.79 -0.7
538,043 + -1.5
538,043 + -1.1
538,043 + -0.3
538,043 + +0.2
538,044 - +0.8
538,044 - -0.2
538,044 - +1.5
538,044 - -1.1
538,044 - -1.3
538,044 - -0.4
538,193 + +0.3
538,243 - +0.1
538,243 - -0.1
538,311 + -1.9
538,311 + +0.3
538,312 - -0.4
538,312 - -0.9
538,312 - -0.8
538,312 - -1.8
538,312 - +1.5
538,334 + -0.1
538,334 + +0.5
538,453 + -0.1
538,453 + -0.2
538,528 + GFF1218 0.16 -0.6
538,528 + GFF1218 0.16 -0.8
538,528 + GFF1218 0.16 -0.4
538,529 - GFF1218 0.16 -1.7
538,561 + GFF1218 0.18 -0.6
538,562 - GFF1218 0.19 +1.0
538,562 - GFF1218 0.19 -0.2
538,591 + GFF1218 0.21 -0.1
538,627 + GFF1218 0.24 -0.3
538,627 + GFF1218 0.24 -0.9
538,627 + GFF1218 0.24 -0.3
538,627 + GFF1218 0.24 -0.4
538,627 + GFF1218 0.24 -0.3
538,628 - GFF1218 0.24 +0.2
538,628 - GFF1218 0.24 +0.3
538,628 - GFF1218 0.24 +0.1
538,628 - GFF1218 0.24 -0.4
538,825 + GFF1218 0.41 +0.4
538,825 + GFF1218 0.41 +0.1
538,825 + GFF1218 0.41 +0.9
538,840 + GFF1218 0.43 -1.1
538,840 + GFF1218 0.43 -1.7
538,840 + GFF1218 0.43 -0.2
538,840 + GFF1218 0.43 +0.6
538,840 + GFF1218 0.43 +0.6
538,840 + GFF1218 0.43 -0.2
538,840 + GFF1218 0.43 -0.5
538,840 + GFF1218 0.43 -1.8
538,841 - GFF1218 0.43 +0.2
538,841 - GFF1218 0.43 +0.1
538,841 - GFF1218 0.43 -0.1
538,841 - GFF1218 0.43 -1.1
538,841 - GFF1218 0.43 -1.2
538,841 - GFF1218 0.43 -1.1
538,870 + GFF1218 0.45 +0.7
538,870 + GFF1218 0.45 +0.6
538,870 + GFF1218 0.45 +1.2
538,870 + GFF1218 0.45 -1.4
538,871 - GFF1218 0.45 -0.7
538,871 - GFF1218 0.45 +2.0
538,928 + GFF1218 0.50 +2.1
538,929 - GFF1218 0.50 +0.3
538,929 - GFF1218 0.50 -0.4
538,990 + GFF1218 0.56 -0.1
538,990 + GFF1218 0.56 -1.3
538,990 + GFF1218 0.56 -0.0
538,990 + GFF1218 0.56 +0.1
538,990 + GFF1218 0.56 -0.4
538,990 + GFF1218 0.56 -0.9
538,990 + GFF1218 0.56 +0.7
538,990 + GFF1218 0.56 -0.5
538,991 - GFF1218 0.56 +0.4
538,991 - GFF1218 0.56 -0.4
538,991 - GFF1218 0.56 +0.6
538,991 - GFF1218 0.56 -0.2
538,991 - GFF1218 0.56 -1.1
538,999 + GFF1218 0.56 +0.7
538,999 + GFF1218 0.56 -2.6
538,999 + GFF1218 0.56 -1.2
538,999 + GFF1218 0.56 +0.7
538,999 + GFF1218 0.56 +0.8
538,999 + GFF1218 0.56 +0.8
538,999 + GFF1218 0.56 -1.9
538,999 + GFF1218 0.56 -0.4
538,999 + GFF1218 0.56 -1.7
538,999 + GFF1218 0.56 -0.5
538,999 + GFF1218 0.56 -0.1
538,999 + GFF1218 0.56 -0.1
538,999 + GFF1218 0.56 -0.2
538,999 + GFF1218 0.56 -0.6
538,999 + GFF1218 0.56 -1.4
539,000 - GFF1218 0.56 -1.1
539,000 - GFF1218 0.56 +0.8
539,000 - GFF1218 0.56 +1.5
539,000 - GFF1218 0.56 +0.4
539,000 - GFF1218 0.56 +0.3
539,000 - GFF1218 0.56 -0.1
539,000 - GFF1218 0.56 +0.2
539,001 - GFF1218 0.57 +0.2
539,131 + GFF1218 0.68 -0.2
539,131 + GFF1218 0.68 -0.7
539,131 + GFF1218 0.68 -0.2
539,132 - GFF1218 0.68 +0.2
539,132 - GFF1218 0.68 +0.5
539,132 - GFF1218 0.68 -0.4

Or see this region's nucleotide sequence