Strain Fitness in Variovorax sp. SCN45 around GFF1058

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1057 and GFF1058 are separated by 139 nucleotidesGFF1058 and GFF1059 are separated by 11 nucleotidesGFF1059 and GFF1060 overlap by 4 nucleotides GFF1057 - hypothetical protein, at 370,742 to 372,184 GFF1057 GFF1058 - Pyrimidine ABC transporter, substrate-binding component, at 372,324 to 373,331 GFF1058 GFF1059 - Hydroxymethylpyrimidine ABC transporter, ATPase component, at 373,343 to 374,194 GFF1059 GFF1060 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 374,191 to 374,949 GFF1060 Position (kb) 372 373 374Strain fitness (log2 ratio) -2 -1 0 1 2at 371.418 kb on + strand, within GFF1057at 371.418 kb on + strand, within GFF1057at 371.418 kb on + strand, within GFF1057at 371.418 kb on + strand, within GFF1057at 371.418 kb on + strand, within GFF1057at 371.418 kb on + strand, within GFF1057at 371.418 kb on + strand, within GFF1057at 371.418 kb on + strand, within GFF1057at 371.418 kb on + strand, within GFF1057at 371.418 kb on + strand, within GFF1057at 371.418 kb on + strand, within GFF1057at 371.418 kb on + strand, within GFF1057at 371.418 kb on + strand, within GFF1057at 371.419 kb on - strand, within GFF1057at 371.419 kb on - strand, within GFF1057at 371.419 kb on - strand, within GFF1057at 371.419 kb on - strand, within GFF1057at 371.419 kb on - strand, within GFF1057at 371.419 kb on - strand, within GFF1057at 371.419 kb on - strand, within GFF1057at 371.419 kb on - strand, within GFF1057at 371.419 kb on - strand, within GFF1057at 371.419 kb on - strand, within GFF1057at 371.419 kb on - strand, within GFF1057at 371.419 kb on - strand, within GFF1057at 372.099 kb on + strandat 372.100 kb on - strandat 372.100 kb on - strandat 372.100 kb on - strandat 372.306 kb on + strandat 372.306 kb on + strandat 372.307 kb on - strandat 372.344 kb on + strandat 372.344 kb on + strandat 372.344 kb on + strandat 372.459 kb on + strand, within GFF1058at 372.459 kb on + strand, within GFF1058at 372.459 kb on + strand, within GFF1058at 372.459 kb on + strand, within GFF1058at 372.459 kb on + strand, within GFF1058at 372.459 kb on + strand, within GFF1058at 372.459 kb on + strand, within GFF1058at 372.460 kb on - strand, within GFF1058at 372.460 kb on - strand, within GFF1058at 372.460 kb on - strand, within GFF1058at 372.460 kb on - strand, within GFF1058at 372.460 kb on - strand, within GFF1058at 372.460 kb on - strand, within GFF1058at 372.460 kb on - strand, within GFF1058at 372.460 kb on - strand, within GFF1058at 372.460 kb on - strand, within GFF1058at 372.483 kb on + strand, within GFF1058at 372.483 kb on + strand, within GFF1058at 372.483 kb on + strand, within GFF1058at 372.483 kb on + strand, within GFF1058at 372.483 kb on + strand, within GFF1058at 372.483 kb on + strand, within GFF1058at 372.483 kb on + strand, within GFF1058at 372.484 kb on - strand, within GFF1058at 372.484 kb on - strand, within GFF1058at 372.484 kb on - strand, within GFF1058at 372.484 kb on - strand, within GFF1058at 372.484 kb on - strand, within GFF1058at 372.484 kb on - strand, within GFF1058at 372.484 kb on - strand, within GFF1058at 372.484 kb on - strand, within GFF1058at 372.669 kb on + strand, within GFF1058at 372.669 kb on + strand, within GFF1058at 372.669 kb on + strand, within GFF1058at 372.669 kb on + strand, within GFF1058at 372.669 kb on + strand, within GFF1058at 372.669 kb on + strand, within GFF1058at 372.670 kb on - strand, within GFF1058at 372.670 kb on - strand, within GFF1058at 372.670 kb on - strand, within GFF1058at 372.670 kb on - strand, within GFF1058at 372.670 kb on - strand, within GFF1058at 372.670 kb on - strand, within GFF1058at 372.670 kb on - strand, within GFF1058at 372.670 kb on - strand, within GFF1058at 372.670 kb on - strand, within GFF1058at 372.678 kb on + strand, within GFF1058at 372.678 kb on + strand, within GFF1058at 372.678 kb on + strand, within GFF1058at 372.678 kb on + strand, within GFF1058at 372.678 kb on + strand, within GFF1058at 372.678 kb on + strand, within GFF1058at 372.678 kb on + strand, within GFF1058at 372.678 kb on + strand, within GFF1058at 372.679 kb on - strand, within GFF1058at 372.753 kb on + strand, within GFF1058at 372.753 kb on + strand, within GFF1058at 372.753 kb on + strand, within GFF1058at 372.754 kb on - strand, within GFF1058at 372.762 kb on + strand, within GFF1058at 372.762 kb on + strand, within GFF1058at 372.762 kb on + strand, within GFF1058at 372.763 kb on - strand, within GFF1058at 372.873 kb on + strand, within GFF1058at 372.873 kb on + strand, within GFF1058at 372.873 kb on + strand, within GFF1058at 372.873 kb on + strand, within GFF1058at 372.874 kb on - strand, within GFF1058at 372.874 kb on - strand, within GFF1058at 372.874 kb on - strand, within GFF1058at 372.876 kb on + strand, within GFF1058at 372.876 kb on + strand, within GFF1058at 372.876 kb on + strand, within GFF1058at 372.876 kb on + strand, within GFF1058at 372.876 kb on + strand, within GFF1058at 372.876 kb on + strand, within GFF1058at 372.876 kb on + strand, within GFF1058at 372.876 kb on + strand, within GFF1058at 372.877 kb on - strand, within GFF1058at 372.877 kb on - strand, within GFF1058at 372.877 kb on - strand, within GFF1058at 372.877 kb on - strand, within GFF1058at 372.877 kb on - strand, within GFF1058at 373.053 kb on + strand, within GFF1058at 373.053 kb on + strand, within GFF1058at 373.054 kb on - strand, within GFF1058at 373.054 kb on - strand, within GFF1058at 373.054 kb on - strand, within GFF1058at 373.242 kb on + strandat 373.242 kb on + strandat 373.242 kb on + strandat 373.242 kb on + strandat 373.242 kb on + strandat 373.242 kb on + strandat 373.281 kb on + strandat 374.266 kb on + strandat 374.266 kb on + strandat 374.266 kb on + strandat 374.266 kb on + strandat 374.266 kb on + strandat 374.266 kb on + strandat 374.267 kb on - strand, within GFF1060at 374.296 kb on + strand, within GFF1060

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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371,418 + GFF1057 0.47 -0.7
371,418 + GFF1057 0.47 +0.0
371,418 + GFF1057 0.47 +1.2
371,418 + GFF1057 0.47 -0.2
371,418 + GFF1057 0.47 -0.2
371,418 + GFF1057 0.47 -1.9
371,418 + GFF1057 0.47 +0.4
371,418 + GFF1057 0.47 -0.5
371,418 + GFF1057 0.47 -0.5
371,418 + GFF1057 0.47 +0.3
371,418 + GFF1057 0.47 +0.3
371,418 + GFF1057 0.47 -0.2
371,418 + GFF1057 0.47 -0.4
371,419 - GFF1057 0.47 -0.6
371,419 - GFF1057 0.47 -1.2
371,419 - GFF1057 0.47 -0.1
371,419 - GFF1057 0.47 +0.2
371,419 - GFF1057 0.47 +0.3
371,419 - GFF1057 0.47 -1.5
371,419 - GFF1057 0.47 -0.9
371,419 - GFF1057 0.47 +0.7
371,419 - GFF1057 0.47 -1.6
371,419 - GFF1057 0.47 -0.4
371,419 - GFF1057 0.47 +1.0
371,419 - GFF1057 0.47 +0.2
372,099 + +0.4
372,100 - -0.1
372,100 - -1.6
372,100 - -0.1
372,306 + -0.1
372,306 + -0.6
372,307 - -0.1
372,344 + -1.4
372,344 + -1.0
372,344 + +0.2
372,459 + GFF1058 0.13 -0.2
372,459 + GFF1058 0.13 -1.0
372,459 + GFF1058 0.13 -0.4
372,459 + GFF1058 0.13 -0.2
372,459 + GFF1058 0.13 +1.3
372,459 + GFF1058 0.13 -0.4
372,459 + GFF1058 0.13 -2.4
372,460 - GFF1058 0.13 -0.5
372,460 - GFF1058 0.13 +1.0
372,460 - GFF1058 0.13 -1.8
372,460 - GFF1058 0.13 -0.0
372,460 - GFF1058 0.13 -0.1
372,460 - GFF1058 0.13 +0.3
372,460 - GFF1058 0.13 +0.1
372,460 - GFF1058 0.13 +0.3
372,460 - GFF1058 0.13 -1.8
372,483 + GFF1058 0.16 +1.6
372,483 + GFF1058 0.16 +0.8
372,483 + GFF1058 0.16 -1.2
372,483 + GFF1058 0.16 +0.6
372,483 + GFF1058 0.16 -0.0
372,483 + GFF1058 0.16 -0.0
372,483 + GFF1058 0.16 -0.5
372,484 - GFF1058 0.16 +0.1
372,484 - GFF1058 0.16 -2.1
372,484 - GFF1058 0.16 +0.3
372,484 - GFF1058 0.16 -1.0
372,484 - GFF1058 0.16 -0.6
372,484 - GFF1058 0.16 +0.6
372,484 - GFF1058 0.16 -1.2
372,484 - GFF1058 0.16 -0.3
372,669 + GFF1058 0.34 -0.3
372,669 + GFF1058 0.34 +0.6
372,669 + GFF1058 0.34 +1.6
372,669 + GFF1058 0.34 -0.3
372,669 + GFF1058 0.34 -0.6
372,669 + GFF1058 0.34 +0.1
372,670 - GFF1058 0.34 -0.3
372,670 - GFF1058 0.34 +0.6
372,670 - GFF1058 0.34 -2.3
372,670 - GFF1058 0.34 -1.3
372,670 - GFF1058 0.34 +1.2
372,670 - GFF1058 0.34 -1.0
372,670 - GFF1058 0.34 -0.9
372,670 - GFF1058 0.34 -1.2
372,670 - GFF1058 0.34 -2.0
372,678 + GFF1058 0.35 -0.3
372,678 + GFF1058 0.35 +0.8
372,678 + GFF1058 0.35 -0.3
372,678 + GFF1058 0.35 -1.1
372,678 + GFF1058 0.35 -0.9
372,678 + GFF1058 0.35 -1.0
372,678 + GFF1058 0.35 -0.8
372,678 + GFF1058 0.35 +0.3
372,679 - GFF1058 0.35 -0.3
372,753 + GFF1058 0.43 +0.9
372,753 + GFF1058 0.43 +0.5
372,753 + GFF1058 0.43 -0.7
372,754 - GFF1058 0.43 -1.4
372,762 + GFF1058 0.43 -1.0
372,762 + GFF1058 0.43 -0.0
372,762 + GFF1058 0.43 +0.1
372,763 - GFF1058 0.44 +0.3
372,873 + GFF1058 0.54 +0.1
372,873 + GFF1058 0.54 -1.9
372,873 + GFF1058 0.54 -0.0
372,873 + GFF1058 0.54 +0.0
372,874 - GFF1058 0.55 -1.9
372,874 - GFF1058 0.55 -0.4
372,874 - GFF1058 0.55 -0.2
372,876 + GFF1058 0.55 -0.1
372,876 + GFF1058 0.55 +0.0
372,876 + GFF1058 0.55 +0.4
372,876 + GFF1058 0.55 +0.6
372,876 + GFF1058 0.55 +0.6
372,876 + GFF1058 0.55 -0.2
372,876 + GFF1058 0.55 +1.0
372,876 + GFF1058 0.55 +0.6
372,877 - GFF1058 0.55 +2.1
372,877 - GFF1058 0.55 -0.5
372,877 - GFF1058 0.55 -0.2
372,877 - GFF1058 0.55 -0.6
372,877 - GFF1058 0.55 -1.2
373,053 + GFF1058 0.72 -0.2
373,053 + GFF1058 0.72 -0.3
373,054 - GFF1058 0.72 -0.3
373,054 - GFF1058 0.72 -0.3
373,054 - GFF1058 0.72 -0.6
373,242 + -1.0
373,242 + -0.0
373,242 + -0.0
373,242 + -0.9
373,242 + -0.3
373,242 + +0.1
373,281 + +0.0
374,266 + +0.8
374,266 + -2.6
374,266 + -1.2
374,266 + -0.4
374,266 + -0.2
374,266 + -0.3
374,267 - GFF1060 0.10 -0.4
374,296 + GFF1060 0.14 +1.6

Or see this region's nucleotide sequence