Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS22750

Experiment: Galactose 1-phosphate dipotassium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS11180 and ABI39_RS11185 are separated by 227 nucleotidesABI39_RS11185 and ABI39_RS22750 overlap by 11 nucleotidesABI39_RS22750 and ABI39_RS11190 are separated by 379 nucleotidesABI39_RS11190 and ABI39_RS22050 overlap by 9 nucleotidesABI39_RS22050 and ABI39_RS11200 are separated by 78 nucleotides ABI39_RS11180: ABI39_RS11180 - plasmid mobilization relaxosome protein MobC, at 2,988,659 to 2,989,030 _RS11180 ABI39_RS11185: ABI39_RS11185 - DUF3408 domain-containing protein, at 2,989,258 to 2,989,752 _RS11185 ABI39_RS22750: ABI39_RS22750 - hypothetical protein, at 2,989,742 to 2,989,888 _RS22750 ABI39_RS11190: ABI39_RS11190 - helix-turn-helix domain-containing protein, at 2,990,268 to 2,990,540 _RS11190 ABI39_RS22050: ABI39_RS22050 - hypothetical protein, at 2,990,532 to 2,990,792 _RS22050 ABI39_RS11200: ABI39_RS11200 - helix-turn-helix domain-containing protein, at 2,990,871 to 2,991,194 _RS11200 Position (kb) 2989 2990Strain fitness (log2 ratio) -1 0 1 2at 2989.152 kb on - strandat 2989.223 kb on + strandat 2989.445 kb on + strand, within ABI39_RS11185at 2989.833 kb on + strand, within ABI39_RS22750at 2989.840 kb on + strand, within ABI39_RS22750at 2989.926 kb on - strandat 2990.027 kb on + strandat 2990.029 kb on + strandat 2990.029 kb on + strandat 2990.030 kb on - strandat 2990.030 kb on - strandat 2990.209 kb on - strandat 2990.230 kb on - strandat 2990.433 kb on - strand, within ABI39_RS11190at 2990.433 kb on - strand, within ABI39_RS11190

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactose 1-phosphate dipotassium salt (C)
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2,989,152 - -0.9
2,989,223 + +0.1
2,989,445 + ABI39_RS11185 0.38 +0.8
2,989,833 + ABI39_RS22750 0.62 +0.5
2,989,840 + ABI39_RS22750 0.67 +0.5
2,989,926 - +0.2
2,990,027 + +0.6
2,990,029 + +0.0
2,990,029 + +0.6
2,990,030 - -0.6
2,990,030 - +1.8
2,990,209 - +0.4
2,990,230 - -0.1
2,990,433 - ABI39_RS11190 0.60 -0.5
2,990,433 - ABI39_RS11190 0.60 +0.2

Or see this region's nucleotide sequence