Experiment: Galactose 1-phosphate dipotassium salt (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS11180 and ABI39_RS11185 are separated by 227 nucleotides ABI39_RS11185 and ABI39_RS22750 overlap by 11 nucleotides ABI39_RS22750 and ABI39_RS11190 are separated by 379 nucleotides ABI39_RS11190 and ABI39_RS22050 overlap by 9 nucleotides ABI39_RS22050 and ABI39_RS11200 are separated by 78 nucleotides
ABI39_RS11180: ABI39_RS11180 - plasmid mobilization relaxosome protein MobC, at 2,988,659 to 2,989,030
_RS11180
ABI39_RS11185: ABI39_RS11185 - DUF3408 domain-containing protein, at 2,989,258 to 2,989,752
_RS11185
ABI39_RS22750: ABI39_RS22750 - hypothetical protein, at 2,989,742 to 2,989,888
_RS22750
ABI39_RS11190: ABI39_RS11190 - helix-turn-helix domain-containing protein, at 2,990,268 to 2,990,540
_RS11190
ABI39_RS22050: ABI39_RS22050 - hypothetical protein, at 2,990,532 to 2,990,792
_RS22050
ABI39_RS11200: ABI39_RS11200 - helix-turn-helix domain-containing protein, at 2,990,871 to 2,991,194
_RS11200
Position (kb)
2989
2990 Strain fitness (log2 ratio)
-1
0
1
2 at 2989.152 kb on - strand at 2989.223 kb on + strand at 2989.445 kb on + strand, within ABI39_RS11185 at 2989.833 kb on + strand, within ABI39_RS22750 at 2989.840 kb on + strand, within ABI39_RS22750 at 2989.926 kb on - strand at 2990.027 kb on + strand at 2990.029 kb on + strand at 2990.029 kb on + strand at 2990.030 kb on - strand at 2990.030 kb on - strand at 2990.209 kb on - strand at 2990.230 kb on - strand at 2990.433 kb on - strand, within ABI39_RS11190 at 2990.433 kb on - strand, within ABI39_RS11190
Per-strain Table
Position Strand Gene LocusTag Fraction Galactose 1-phosphate dipotassium salt (C) remove 2,989,152 - -0.9 2,989,223 + +0.1 2,989,445 + ABI39_RS11185 0.38 +0.8 2,989,833 + ABI39_RS22750 0.62 +0.5 2,989,840 + ABI39_RS22750 0.67 +0.5 2,989,926 - +0.2 2,990,027 + +0.6 2,990,029 + +0.0 2,990,029 + +0.6 2,990,030 - -0.6 2,990,030 - +1.8 2,990,209 - +0.4 2,990,230 - -0.1 2,990,433 - ABI39_RS11190 0.60 -0.5 2,990,433 - ABI39_RS11190 0.60 +0.2
Or see this region's nucleotide sequence