Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS07250

Experiment: Galactose 1-phosphate dipotassium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS07240 and ABI39_RS07245 are separated by 9 nucleotidesABI39_RS07245 and ABI39_RS07250 are separated by 247 nucleotidesABI39_RS07250 and ABI39_RS07255 are separated by 25 nucleotides ABI39_RS07240: ABI39_RS07240 - Crp/Fnr family transcriptional regulator, at 1,989,675 to 1,990,217 _RS07240 ABI39_RS07245: ABI39_RS07245 - Crp/Fnr family transcriptional regulator, at 1,990,227 to 1,990,799 _RS07245 ABI39_RS07250: ABI39_RS07250 - DUF1016 family protein, at 1,991,047 to 1,992,186 _RS07250 ABI39_RS07255: ABI39_RS07255 - site-specific integrase, at 1,992,212 to 1,993,435 _RS07255 Position (kb) 1991 1992 1993Strain fitness (log2 ratio) -1 0 1at 1990.047 kb on - strand, within ABI39_RS07240at 1990.048 kb on + strand, within ABI39_RS07240at 1990.048 kb on + strand, within ABI39_RS07240at 1990.049 kb on - strand, within ABI39_RS07240at 1990.052 kb on + strand, within ABI39_RS07240at 1990.053 kb on - strand, within ABI39_RS07240at 1990.053 kb on - strand, within ABI39_RS07240at 1990.053 kb on - strand, within ABI39_RS07240at 1990.136 kb on + strand, within ABI39_RS07240at 1990.228 kb on + strandat 1990.233 kb on - strandat 1990.305 kb on - strand, within ABI39_RS07245at 1990.332 kb on - strand, within ABI39_RS07245at 1990.338 kb on + strand, within ABI39_RS07245at 1990.348 kb on + strand, within ABI39_RS07245at 1990.348 kb on + strand, within ABI39_RS07245at 1990.348 kb on + strand, within ABI39_RS07245at 1990.380 kb on + strand, within ABI39_RS07245at 1990.380 kb on + strand, within ABI39_RS07245at 1990.380 kb on + strand, within ABI39_RS07245at 1990.381 kb on - strand, within ABI39_RS07245at 1990.393 kb on + strand, within ABI39_RS07245at 1990.399 kb on - strand, within ABI39_RS07245at 1990.402 kb on - strand, within ABI39_RS07245at 1990.405 kb on + strand, within ABI39_RS07245at 1990.406 kb on - strand, within ABI39_RS07245at 1990.425 kb on - strand, within ABI39_RS07245at 1990.431 kb on + strand, within ABI39_RS07245at 1990.485 kb on + strand, within ABI39_RS07245at 1990.488 kb on - strand, within ABI39_RS07245at 1990.502 kb on + strand, within ABI39_RS07245at 1990.528 kb on - strand, within ABI39_RS07245at 1990.548 kb on + strand, within ABI39_RS07245at 1990.550 kb on + strand, within ABI39_RS07245at 1990.551 kb on - strand, within ABI39_RS07245at 1990.561 kb on - strand, within ABI39_RS07245at 1990.596 kb on + strand, within ABI39_RS07245at 1990.606 kb on - strand, within ABI39_RS07245at 1990.608 kb on - strand, within ABI39_RS07245at 1990.631 kb on + strand, within ABI39_RS07245at 1990.634 kb on - strand, within ABI39_RS07245at 1990.720 kb on + strand, within ABI39_RS07245at 1990.778 kb on - strandat 1990.945 kb on - strandat 1990.946 kb on + strandat 1990.969 kb on - strandat 1990.988 kb on - strandat 1991.013 kb on - strandat 1991.106 kb on + strandat 1991.107 kb on - strandat 1991.108 kb on + strandat 1991.108 kb on + strandat 1991.155 kb on + strandat 1991.156 kb on - strandat 1991.163 kb on + strand, within ABI39_RS07250at 1991.164 kb on - strand, within ABI39_RS07250at 1991.251 kb on - strand, within ABI39_RS07250at 1991.251 kb on - strand, within ABI39_RS07250at 1991.251 kb on - strand, within ABI39_RS07250at 1991.254 kb on + strand, within ABI39_RS07250at 1991.254 kb on + strand, within ABI39_RS07250at 1991.305 kb on - strand, within ABI39_RS07250at 1991.517 kb on + strand, within ABI39_RS07250at 1991.542 kb on + strand, within ABI39_RS07250at 1991.543 kb on - strand, within ABI39_RS07250at 1991.715 kb on + strand, within ABI39_RS07250at 1991.716 kb on - strand, within ABI39_RS07250at 1991.738 kb on - strand, within ABI39_RS07250at 1991.901 kb on + strand, within ABI39_RS07250at 1991.902 kb on - strand, within ABI39_RS07250at 1991.904 kb on - strand, within ABI39_RS07250at 1991.943 kb on - strand, within ABI39_RS07250at 1992.072 kb on - strand, within ABI39_RS07250at 1992.072 kb on - strand, within ABI39_RS07250at 1992.072 kb on - strand, within ABI39_RS07250at 1992.099 kb on + strandat 1992.160 kb on - strandat 1992.186 kb on + strandat 1992.191 kb on - strandat 1992.191 kb on - strandat 1992.199 kb on - strandat 1992.239 kb on + strandat 1992.286 kb on + strandat 1992.389 kb on + strand, within ABI39_RS07255at 1992.390 kb on - strand, within ABI39_RS07255at 1992.512 kb on + strand, within ABI39_RS07255at 1992.513 kb on - strand, within ABI39_RS07255at 1992.776 kb on - strand, within ABI39_RS07255at 1992.781 kb on + strand, within ABI39_RS07255at 1992.809 kb on + strand, within ABI39_RS07255at 1992.809 kb on + strand, within ABI39_RS07255at 1992.865 kb on + strand, within ABI39_RS07255at 1992.866 kb on - strand, within ABI39_RS07255at 1992.897 kb on + strand, within ABI39_RS07255at 1992.902 kb on + strand, within ABI39_RS07255at 1992.931 kb on + strand, within ABI39_RS07255at 1992.946 kb on + strand, within ABI39_RS07255at 1992.977 kb on + strand, within ABI39_RS07255at 1993.036 kb on - strand, within ABI39_RS07255at 1993.047 kb on + strand, within ABI39_RS07255at 1993.048 kb on - strand, within ABI39_RS07255at 1993.060 kb on - strand, within ABI39_RS07255at 1993.080 kb on + strand, within ABI39_RS07255

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactose 1-phosphate dipotassium salt (C)
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1,990,047 - ABI39_RS07240 0.69 -0.1
1,990,048 + ABI39_RS07240 0.69 -0.8
1,990,048 + ABI39_RS07240 0.69 -0.7
1,990,049 - ABI39_RS07240 0.69 -0.3
1,990,052 + ABI39_RS07240 0.69 +0.2
1,990,053 - ABI39_RS07240 0.70 +0.6
1,990,053 - ABI39_RS07240 0.70 -0.0
1,990,053 - ABI39_RS07240 0.70 +0.2
1,990,136 + ABI39_RS07240 0.85 +0.7
1,990,228 + -0.7
1,990,233 - +0.1
1,990,305 - ABI39_RS07245 0.14 +0.5
1,990,332 - ABI39_RS07245 0.18 +0.1
1,990,338 + ABI39_RS07245 0.19 +0.3
1,990,348 + ABI39_RS07245 0.21 +0.3
1,990,348 + ABI39_RS07245 0.21 -0.2
1,990,348 + ABI39_RS07245 0.21 +0.4
1,990,380 + ABI39_RS07245 0.27 +0.2
1,990,380 + ABI39_RS07245 0.27 +0.5
1,990,380 + ABI39_RS07245 0.27 -0.5
1,990,381 - ABI39_RS07245 0.27 +0.1
1,990,393 + ABI39_RS07245 0.29 +0.1
1,990,399 - ABI39_RS07245 0.30 +0.5
1,990,402 - ABI39_RS07245 0.31 +0.4
1,990,405 + ABI39_RS07245 0.31 -0.1
1,990,406 - ABI39_RS07245 0.31 +0.3
1,990,425 - ABI39_RS07245 0.35 +0.4
1,990,431 + ABI39_RS07245 0.36 +0.5
1,990,485 + ABI39_RS07245 0.45 +0.4
1,990,488 - ABI39_RS07245 0.46 +0.3
1,990,502 + ABI39_RS07245 0.48 +0.2
1,990,528 - ABI39_RS07245 0.53 +0.1
1,990,548 + ABI39_RS07245 0.56 -0.3
1,990,550 + ABI39_RS07245 0.56 +0.5
1,990,551 - ABI39_RS07245 0.57 -0.0
1,990,561 - ABI39_RS07245 0.58 +0.3
1,990,596 + ABI39_RS07245 0.64 +0.4
1,990,606 - ABI39_RS07245 0.66 -0.2
1,990,608 - ABI39_RS07245 0.66 -0.4
1,990,631 + ABI39_RS07245 0.71 +0.0
1,990,634 - ABI39_RS07245 0.71 +0.4
1,990,720 + ABI39_RS07245 0.86 +0.4
1,990,778 - +0.7
1,990,945 - +0.2
1,990,946 + +0.4
1,990,969 - +0.2
1,990,988 - +0.2
1,991,013 - -0.2
1,991,106 + +0.1
1,991,107 - +0.2
1,991,108 + -0.5
1,991,108 + -0.3
1,991,155 + +0.4
1,991,156 - +0.0
1,991,163 + ABI39_RS07250 0.10 +0.2
1,991,164 - ABI39_RS07250 0.10 +0.5
1,991,251 - ABI39_RS07250 0.18 +0.3
1,991,251 - ABI39_RS07250 0.18 +0.1
1,991,251 - ABI39_RS07250 0.18 +0.2
1,991,254 + ABI39_RS07250 0.18 -0.3
1,991,254 + ABI39_RS07250 0.18 -0.4
1,991,305 - ABI39_RS07250 0.23 -0.8
1,991,517 + ABI39_RS07250 0.41 +0.2
1,991,542 + ABI39_RS07250 0.43 +0.4
1,991,543 - ABI39_RS07250 0.44 +0.4
1,991,715 + ABI39_RS07250 0.59 +0.1
1,991,716 - ABI39_RS07250 0.59 +0.6
1,991,738 - ABI39_RS07250 0.61 -0.3
1,991,901 + ABI39_RS07250 0.75 +0.2
1,991,902 - ABI39_RS07250 0.75 -0.0
1,991,904 - ABI39_RS07250 0.75 +0.1
1,991,943 - ABI39_RS07250 0.79 -0.6
1,992,072 - ABI39_RS07250 0.90 +0.0
1,992,072 - ABI39_RS07250 0.90 +0.5
1,992,072 - ABI39_RS07250 0.90 +0.7
1,992,099 + +0.1
1,992,160 - +0.3
1,992,186 + +0.2
1,992,191 - -0.3
1,992,191 - +0.1
1,992,199 - +0.3
1,992,239 + -0.0
1,992,286 + -0.1
1,992,389 + ABI39_RS07255 0.14 -0.8
1,992,390 - ABI39_RS07255 0.15 +0.9
1,992,512 + ABI39_RS07255 0.25 -0.2
1,992,513 - ABI39_RS07255 0.25 +0.0
1,992,776 - ABI39_RS07255 0.46 +0.3
1,992,781 + ABI39_RS07255 0.46 -0.0
1,992,809 + ABI39_RS07255 0.49 +0.0
1,992,809 + ABI39_RS07255 0.49 +0.2
1,992,865 + ABI39_RS07255 0.53 -0.4
1,992,866 - ABI39_RS07255 0.53 -0.6
1,992,897 + ABI39_RS07255 0.56 +0.2
1,992,902 + ABI39_RS07255 0.56 -0.1
1,992,931 + ABI39_RS07255 0.59 -0.4
1,992,946 + ABI39_RS07255 0.60 +0.2
1,992,977 + ABI39_RS07255 0.62 -0.1
1,993,036 - ABI39_RS07255 0.67 -0.2
1,993,047 + ABI39_RS07255 0.68 -0.6
1,993,048 - ABI39_RS07255 0.68 +0.4
1,993,060 - ABI39_RS07255 0.69 +0.2
1,993,080 + ABI39_RS07255 0.71 -0.1

Or see this region's nucleotide sequence