Strain Fitness in Variovorax sp. SCN45 around GFF937

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF936 and GFF937 overlap by 1 nucleotidesGFF937 and GFF938 overlap by 4 nucleotidesGFF938 and GFF939 overlap by 11 nucleotides GFF936 - Propionyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.3), at 249,308 to 251,356 GFF936 GFF937 - Biotin synthase (EC 2.8.1.6), at 251,356 to 252,390 GFF937 GFF938 - Methylmalonyl-CoA epimerase (EC 5.1.99.1), at 252,387 to 252,878 GFF938 GFF939 - Transcriptional regulator, AsnC family, at 252,868 to 253,365 GFF939 Position (kb) 251 252 253Strain fitness (log2 ratio) -2 -1 0 1 2at 250.478 kb on + strand, within GFF936at 250.478 kb on + strand, within GFF936at 250.478 kb on + strand, within GFF936at 250.478 kb on + strand, within GFF936at 250.478 kb on + strand, within GFF936at 250.478 kb on + strand, within GFF936at 250.478 kb on + strand, within GFF936at 250.479 kb on - strand, within GFF936at 250.479 kb on - strand, within GFF936at 250.479 kb on - strand, within GFF936at 250.739 kb on + strand, within GFF936at 250.739 kb on + strand, within GFF936at 250.739 kb on + strand, within GFF936at 250.740 kb on - strand, within GFF936at 250.740 kb on - strand, within GFF936at 250.740 kb on - strand, within GFF936at 250.740 kb on - strand, within GFF936at 250.931 kb on + strand, within GFF936at 250.932 kb on - strand, within GFF936at 251.123 kb on + strand, within GFF936at 251.123 kb on + strand, within GFF936at 251.123 kb on + strand, within GFF936at 251.124 kb on - strand, within GFF936at 251.861 kb on - strand, within GFF937at 251.861 kb on - strand, within GFF937at 251.861 kb on - strand, within GFF937at 251.861 kb on - strand, within GFF937at 251.863 kb on + strand, within GFF937at 251.863 kb on + strand, within GFF937at 251.863 kb on + strand, within GFF937at 251.863 kb on + strand, within GFF937at 251.863 kb on + strand, within GFF937at 251.864 kb on - strand, within GFF937at 251.864 kb on - strand, within GFF937at 251.864 kb on - strand, within GFF937at 251.864 kb on - strand, within GFF937at 251.864 kb on - strand, within GFF937at 251.864 kb on - strand, within GFF937at 251.894 kb on - strand, within GFF937at 251.894 kb on - strand, within GFF937at 251.894 kb on - strand, within GFF937at 251.896 kb on + strand, within GFF937at 251.896 kb on + strand, within GFF937at 251.896 kb on + strand, within GFF937at 251.896 kb on + strand, within GFF937at 251.897 kb on - strand, within GFF937at 251.897 kb on - strand, within GFF937at 251.897 kb on - strand, within GFF937at 251.897 kb on - strand, within GFF937at 251.923 kb on + strand, within GFF937at 251.923 kb on + strand, within GFF937at 251.924 kb on - strand, within GFF937at 251.924 kb on - strand, within GFF937at 251.924 kb on - strand, within GFF937at 251.924 kb on - strand, within GFF937at 252.271 kb on + strand, within GFF937at 252.272 kb on - strand, within GFF937at 252.869 kb on + strandat 252.869 kb on + strandat 252.870 kb on - strandat 253.070 kb on + strand, within GFF939at 253.070 kb on + strand, within GFF939at 253.070 kb on + strand, within GFF939at 253.070 kb on + strand, within GFF939at 253.070 kb on + strand, within GFF939at 253.070 kb on + strand, within GFF939at 253.070 kb on + strand, within GFF939at 253.070 kb on + strand, within GFF939at 253.070 kb on + strand, within GFF939at 253.070 kb on + strand, within GFF939at 253.070 kb on + strand, within GFF939at 253.071 kb on - strand, within GFF939at 253.161 kb on - strand, within GFF939at 253.161 kb on - strand, within GFF939at 253.161 kb on - strand, within GFF939at 253.376 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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250,478 + GFF936 0.57 +1.4
250,478 + GFF936 0.57 -0.6
250,478 + GFF936 0.57 +0.4
250,478 + GFF936 0.57 -0.5
250,478 + GFF936 0.57 -2.5
250,478 + GFF936 0.57 +0.5
250,478 + GFF936 0.57 -0.9
250,479 - GFF936 0.57 -0.8
250,479 - GFF936 0.57 -1.1
250,479 - GFF936 0.57 +0.1
250,739 + GFF936 0.70 -0.1
250,739 + GFF936 0.70 -0.9
250,739 + GFF936 0.70 -2.1
250,740 - GFF936 0.70 -0.1
250,740 - GFF936 0.70 -1.0
250,740 - GFF936 0.70 -0.5
250,740 - GFF936 0.70 -0.5
250,931 + GFF936 0.79 -0.1
250,932 - GFF936 0.79 -1.4
251,123 + GFF936 0.89 -0.3
251,123 + GFF936 0.89 -0.6
251,123 + GFF936 0.89 -1.3
251,124 - GFF936 0.89 +0.6
251,861 - GFF937 0.49 +0.1
251,861 - GFF937 0.49 -2.6
251,861 - GFF937 0.49 -2.4
251,861 - GFF937 0.49 -1.2
251,863 + GFF937 0.49 -1.2
251,863 + GFF937 0.49 -1.4
251,863 + GFF937 0.49 -1.1
251,863 + GFF937 0.49 -0.9
251,863 + GFF937 0.49 -1.5
251,864 - GFF937 0.49 -1.1
251,864 - GFF937 0.49 -2.6
251,864 - GFF937 0.49 -0.1
251,864 - GFF937 0.49 -0.0
251,864 - GFF937 0.49 -0.7
251,864 - GFF937 0.49 -0.3
251,894 - GFF937 0.52 -0.8
251,894 - GFF937 0.52 -0.8
251,894 - GFF937 0.52 -0.3
251,896 + GFF937 0.52 +0.1
251,896 + GFF937 0.52 -0.1
251,896 + GFF937 0.52 -1.1
251,896 + GFF937 0.52 +0.1
251,897 - GFF937 0.52 -0.8
251,897 - GFF937 0.52 -0.5
251,897 - GFF937 0.52 -1.0
251,897 - GFF937 0.52 +0.0
251,923 + GFF937 0.55 -0.2
251,923 + GFF937 0.55 -0.4
251,924 - GFF937 0.55 +0.5
251,924 - GFF937 0.55 -0.3
251,924 - GFF937 0.55 -0.7
251,924 - GFF937 0.55 +0.5
252,271 + GFF937 0.88 -0.8
252,272 - GFF937 0.89 +1.0
252,869 + +1.3
252,869 + +0.0
252,870 - -2.1
253,070 + GFF939 0.41 +1.8
253,070 + GFF939 0.41 -0.1
253,070 + GFF939 0.41 +0.2
253,070 + GFF939 0.41 +0.7
253,070 + GFF939 0.41 -0.1
253,070 + GFF939 0.41 -1.7
253,070 + GFF939 0.41 -0.8
253,070 + GFF939 0.41 +0.2
253,070 + GFF939 0.41 +1.2
253,070 + GFF939 0.41 +0.7
253,070 + GFF939 0.41 -0.5
253,071 - GFF939 0.41 +0.1
253,161 - GFF939 0.59 -1.5
253,161 - GFF939 0.59 -0.0
253,161 - GFF939 0.59 -0.7
253,376 + -0.7

Or see this region's nucleotide sequence