Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF86 and GFF87 overlap by 4 nucleotides GFF87 and GFF88 are separated by 7 nucleotides GFF88 and GFF89 are separated by 5 nucleotides
GFF86 - Cell morphology protein, at 102,517 to 103,191
GFF86
GFF87 - no description, at 103,188 to 103,868
GFF87
GFF88 - Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-), at 103,876 to 105,270
GFF88
GFF89 - hypothetical protein, at 105,276 to 106,388
GFF89
Position (kb) 103
104
105
106 Strain fitness (log2 ratio) -2
-1
0
1
2 at 102.968 kb on - strand, within GFF86 at 102.980 kb on - strand, within GFF86 at 102.980 kb on - strand, within GFF86 at 103.273 kb on - strand, within GFF87 at 103.273 kb on - strand, within GFF87 at 103.405 kb on - strand, within GFF87 at 103.602 kb on + strand, within GFF87 at 103.602 kb on + strand, within GFF87 at 103.603 kb on - strand, within GFF87 at 103.603 kb on - strand, within GFF87 at 103.603 kb on - strand, within GFF87 at 103.934 kb on - strand at 103.934 kb on - strand at 103.934 kb on - strand at 103.993 kb on + strand at 103.993 kb on + strand at 103.994 kb on - strand at 103.994 kb on - strand at 103.994 kb on - strand at 103.994 kb on - strand at 103.994 kb on - strand at 104.138 kb on + strand, within GFF88 at 104.139 kb on - strand, within GFF88 at 104.139 kb on - strand, within GFF88 at 104.139 kb on - strand, within GFF88 at 104.139 kb on - strand, within GFF88 at 104.139 kb on - strand, within GFF88 at 104.139 kb on - strand, within GFF88 at 104.139 kb on - strand, within GFF88 at 104.150 kb on - strand, within GFF88 at 104.272 kb on + strand, within GFF88 at 104.272 kb on + strand, within GFF88 at 104.272 kb on + strand, within GFF88 at 104.273 kb on - strand, within GFF88 at 104.273 kb on - strand, within GFF88 at 104.335 kb on + strand, within GFF88 at 104.335 kb on + strand, within GFF88 at 104.335 kb on + strand, within GFF88 at 104.335 kb on + strand, within GFF88 at 104.336 kb on - strand, within GFF88 at 104.336 kb on - strand, within GFF88 at 104.336 kb on - strand, within GFF88 at 104.336 kb on - strand, within GFF88 at 104.569 kb on + strand, within GFF88 at 104.570 kb on - strand, within GFF88 at 104.570 kb on - strand, within GFF88 at 104.604 kb on + strand, within GFF88 at 104.604 kb on + strand, within GFF88 at 104.712 kb on + strand, within GFF88 at 104.712 kb on + strand, within GFF88 at 104.712 kb on + strand, within GFF88 at 104.713 kb on - strand, within GFF88 at 104.713 kb on - strand, within GFF88 at 104.713 kb on - strand, within GFF88 at 104.713 kb on - strand, within GFF88 at 104.740 kb on + strand, within GFF88 at 104.741 kb on - strand, within GFF88 at 104.741 kb on - strand, within GFF88 at 104.746 kb on + strand, within GFF88 at 104.857 kb on + strand, within GFF88 at 104.943 kb on + strand, within GFF88 at 105.100 kb on + strand, within GFF88 at 105.100 kb on + strand, within GFF88 at 105.101 kb on - strand, within GFF88 at 105.256 kb on + strand at 105.256 kb on + strand at 105.257 kb on - strand at 105.432 kb on - strand, within GFF89 at 105.710 kb on + strand, within GFF89
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 102,968 - GFF86 0.67 +0.7 102,980 - GFF86 0.69 +0.6 102,980 - GFF86 0.69 +1.5 103,273 - GFF87 0.12 -1.1 103,273 - GFF87 0.12 +1.4 103,405 - GFF87 0.32 +0.4 103,602 + GFF87 0.61 +0.1 103,602 + GFF87 0.61 -0.4 103,603 - GFF87 0.61 -1.2 103,603 - GFF87 0.61 -1.4 103,603 - GFF87 0.61 +1.8 103,934 - -0.8 103,934 - -0.6 103,934 - +0.4 103,993 + -0.7 103,993 + -0.2 103,994 - +0.5 103,994 - +0.0 103,994 - +1.2 103,994 - +0.4 103,994 - -0.3 104,138 + GFF88 0.19 +0.3 104,139 - GFF88 0.19 -1.2 104,139 - GFF88 0.19 +0.0 104,139 - GFF88 0.19 -0.2 104,139 - GFF88 0.19 +0.5 104,139 - GFF88 0.19 +0.7 104,139 - GFF88 0.19 -0.1 104,139 - GFF88 0.19 +0.4 104,150 - GFF88 0.20 -0.5 104,272 + GFF88 0.28 -0.8 104,272 + GFF88 0.28 -0.5 104,272 + GFF88 0.28 +0.2 104,273 - GFF88 0.28 +0.2 104,273 - GFF88 0.28 +0.1 104,335 + GFF88 0.33 +0.4 104,335 + GFF88 0.33 -0.8 104,335 + GFF88 0.33 -0.3 104,335 + GFF88 0.33 -0.1 104,336 - GFF88 0.33 -0.8 104,336 - GFF88 0.33 -0.1 104,336 - GFF88 0.33 -0.2 104,336 - GFF88 0.33 +0.5 104,569 + GFF88 0.50 -0.6 104,570 - GFF88 0.50 +1.2 104,570 - GFF88 0.50 +0.2 104,604 + GFF88 0.52 -0.3 104,604 + GFF88 0.52 -0.5 104,712 + GFF88 0.60 -0.9 104,712 + GFF88 0.60 -0.6 104,712 + GFF88 0.60 +0.5 104,713 - GFF88 0.60 -1.5 104,713 - GFF88 0.60 -1.2 104,713 - GFF88 0.60 +0.4 104,713 - GFF88 0.60 -0.1 104,740 + GFF88 0.62 -0.2 104,741 - GFF88 0.62 -0.4 104,741 - GFF88 0.62 +0.5 104,746 + GFF88 0.62 -1.3 104,857 + GFF88 0.70 +1.4 104,943 + GFF88 0.76 -0.8 105,100 + GFF88 0.88 -0.8 105,100 + GFF88 0.88 -0.2 105,101 - GFF88 0.88 +0.1 105,256 + +1.1 105,256 + -2.0 105,257 - +1.4 105,432 - GFF89 0.14 +0.3 105,710 + GFF89 0.39 +0.5
Or see this region's nucleotide sequence