Strain Fitness in Variovorax sp. SCN45 around GFF7415

Experiment: M9 with Supernatant from Cyptococcus

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus
2,445	+		GFF7413	0.82	-0.2
2,445	+		GFF7413	0.82	+0.2
2,445	+		GFF7413	0.82	-0.4
2,445	+		GFF7413	0.82	-1.9
2,445	+		GFF7413	0.82	+0.3
2,445	+		GFF7413	0.82	+1.4
2,445	+		GFF7413	0.82	-0.3
2,445	+		GFF7413	0.82	+2.2
2,445	+		GFF7413	0.82	+2.1
2,445	+		GFF7413	0.82	-0.1
2,446	-		GFF7413	0.82	+0.6
2,446	-		GFF7413	0.82	+0.3
2,446	-		GFF7413	0.82	-1.2
2,446	-		GFF7413	0.82	+0.8
2,446	-		GFF7413	0.82	-0.0
2,446	-		GFF7413	0.82	-1.3
2,446	-		GFF7413	0.82	-2.1
2,446	-		GFF7413	0.82	-0.7
2,446	-		GFF7413	0.82	-1.8
2,446	-		GFF7413	0.82	+0.7
2,446	-		GFF7413	0.82	-0.1
2,559	+				+0.6
2,559	+				+0.1
2,559	+				-0.7
2,560	-				+0.5
2,560	-				-0.6
2,560	-				-0.0
2,560	-				-1.6
2,560	-				+0.1
2,560	-				+1.1
2,560	-				-0.9
2,596	+				-1.1
2,596	+				-0.2
2,597	-				-0.5
2,652	+				-0.6
2,653	-				-0.3
2,653	-				-1.5
2,664	+		GFF7414	0.10	+0.2
2,664	+		GFF7414	0.10	-0.3
2,664	+		GFF7414	0.10	-0.3
2,664	+		GFF7414	0.10	-1.1
2,664	+		GFF7414	0.10	-0.4
2,664	+		GFF7414	0.10	-0.1
2,664	+		GFF7414	0.10	-0.1
2,664	+		GFF7414	0.10	-0.7
2,664	+		GFF7414	0.10	-0.2
2,664	+		GFF7414	0.10	-0.5
2,664	+		GFF7414	0.10	+0.8
2,664	+		GFF7414	0.10	-0.8
2,665	-		GFF7414	0.10	-0.3
2,665	-		GFF7414	0.10	-0.6
2,665	-		GFF7414	0.10	-0.9
2,665	-		GFF7414	0.10	+0.4
2,665	-		GFF7414	0.10	+0.8
2,665	-		GFF7414	0.10	+2.1
2,665	-		GFF7414	0.10	+0.5
2,665	-		GFF7414	0.10	+0.9
2,665	-		GFF7414	0.10	+1.2
2,665	-		GFF7414	0.10	-0.9
2,665	-		GFF7414	0.10	-0.1
2,685	-		GFF7414	0.14	-0.7
2,685	-		GFF7414	0.14	+2.4
2,694	+		GFF7414	0.16	-0.5
2,695	-		GFF7414	0.16	-0.6
2,695	-		GFF7414	0.16	+0.1
2,695	-		GFF7414	0.16	+1.0
2,695	-		GFF7414	0.16	-0.3
2,718	+		GFF7414	0.21	+0.4
2,755	+		GFF7414	0.29	+0.1
2,755	+		GFF7414	0.29	-0.3
2,756	-		GFF7414	0.29	+0.1
2,790	+		GFF7414	0.36	-0.5
2,790	+		GFF7414	0.36	-1.6
2,790	+		GFF7414	0.36	-0.4
2,790	+		GFF7414	0.36	-0.1
2,790	+		GFF7414	0.36	-0.6
2,790	+		GFF7414	0.36	-0.5
2,790	+		GFF7414	0.36	+0.1
2,791	-		GFF7414	0.36	-1.9
2,791	-		GFF7414	0.36	-0.4
2,791	-		GFF7414	0.36	-2.1
2,791	-		GFF7414	0.36	-0.8
2,791	-		GFF7414	0.36	+0.8
2,791	-		GFF7414	0.36	-1.4
2,791	-		GFF7414	0.36	-0.2
2,791	-		GFF7414	0.36	-0.2
2,862	+		GFF7414	0.51	-0.0
2,862	+		GFF7414	0.51	-0.9
2,863	-		GFF7414	0.51	+0.8
2,892	+		GFF7414	0.57	+0.2
2,892	+		GFF7414	0.57	-0.3
2,892	+		GFF7414	0.57	-0.3
2,892	+		GFF7414	0.57	-1.6
2,892	+		GFF7414	0.57	+0.8
2,892	+		GFF7414	0.57	+0.0
2,893	-		GFF7414	0.57	-0.8
2,893	-		GFF7414	0.57	-0.0
2,893	-		GFF7414	0.57	+0.0
2,893	-		GFF7414	0.57	+0.4
2,893	-		GFF7414	0.57	-0.4
2,893	-		GFF7414	0.57	-0.6
2,893	-		GFF7414	0.57	+0.1
2,893	-		GFF7414	0.57	-0.6
2,965	+		GFF7414	0.72	-0.6
2,965	+		GFF7414	0.72	+0.2
2,965	+		GFF7414	0.72	+0.1
2,965	+		GFF7414	0.72	-0.6
2,966	-		GFF7414	0.72	-0.0
2,966	-		GFF7414	0.72	+0.3
2,966	-		GFF7414	0.72	-1.0
2,995	+		GFF7414	0.78	+0.1
2,995	+		GFF7414	0.78	-2.1
2,995	+		GFF7414	0.78	-0.1
2,995	+		GFF7414	0.78	-0.0
2,996	-		GFF7414	0.78	-1.0
2,996	-		GFF7414	0.78	-1.4
2,996	-		GFF7414	0.78	-0.5
2,996	-		GFF7414	0.78	-0.5
2,996	-		GFF7414	0.78	-0.8
2,996	-		GFF7414	0.78	-1.3
3,055	+				+0.2
3,055	+				-0.6
3,055	+				-0.0
3,055	+				-0.8
3,055	+				+0.2
3,055	+				-0.0
3,055	+				-0.6
3,055	+				+0.9
3,055	+				-1.6
3,055	+				-0.5
3,055	+				+0.8
3,056	-				-1.0
3,056	-				-0.7
3,056	-				-0.1
3,056	-				-0.2
3,056	-				-1.2
3,056	-				-0.4
3,056	-				+0.7
3,056	-				-0.7
3,056	-				-0.1
3,056	-				-0.6
3,056	-				-0.7
3,056	-				-0.3
3,077	+				+0.7
3,077	+				+0.2
3,077	+				-0.2
3,077	+				-0.6
3,077	+				-0.7
3,077	+				-0.3
3,077	+				-0.2
3,078	-				-0.7
3,078	-				-0.9
3,078	-				-0.8
3,088	+				-0.4
3,088	+				-1.2
3,088	+				+0.0
3,088	+				-0.6
3,088	+				+0.1
3,089	-				-0.5
3,089	-				-0.6
3,089	-				-0.3
3,089	-				-0.4
3,089	-				-0.2
3,089	-				+0.6
3,089	-				+0.4
3,089	-				+0.2
3,089	-				-1.0
3,089	-				-0.4
3,089	-				-0.5
3,089	-				-0.2
3,089	-				-0.0
3,089	-				-1.5
3,089	-				-0.9
3,157	+				+0.0
3,157	+				-0.8
3,157	+				+0.2
3,157	+				-0.2
3,157	+				+0.3
3,157	+				-0.6
3,157	+				+0.3
3,157	+				-0.4
3,157	+				+0.2
3,158	-				+0.3
3,158	-				-1.4
3,158	-				+0.2
3,158	-				-2.0
3,158	-				+1.5
3,158	-				-0.5
3,158	-				-0.6
3,194	-				-2.1
3,211	+				-0.3
3,211	+				-0.4
3,257	+				+0.7
3,257	+				-0.6
3,258	-				-1.9
3,288	+				-0.4
3,288	+				-0.6
3,288	+				-0.6
3,288	+				+0.1
3,289	-				-1.4
3,289	-				+0.3
3,289	-				-0.2
3,289	-				-0.0
3,289	-				-0.4
3,294	+				-1.0
3,294	+				-0.4
3,294	+				-0.5
3,294	+				-0.4
3,295	-				-0.2
3,295	-				-1.3
3,351	+				-0.7
3,430	+				-0.3
3,430	+				-0.6
3,431	-				-0.8
3,508	+		GFF7415	0.15	-0.7
3,508	+		GFF7415	0.15	-0.0
3,508	+		GFF7415	0.15	+0.3
3,509	-		GFF7415	0.15	+0.4
3,509	-		GFF7415	0.15	-0.9
3,645	+		GFF7415	0.33	+0.1
3,645	+		GFF7415	0.33	-1.0
3,645	+		GFF7415	0.33	-0.1
3,645	+		GFF7415	0.33	+0.9
3,645	+		GFF7415	0.33	-0.7
3,645	+		GFF7415	0.33	-0.6
3,645	+		GFF7415	0.33	-1.2
3,645	+		GFF7415	0.33	-2.4
3,645	+		GFF7415	0.33	-0.4
3,645	+		GFF7415	0.33	-0.0
3,645	+		GFF7415	0.33	+0.1
3,645	+		GFF7415	0.33	-0.3
3,645	+		GFF7415	0.33	-1.0
3,645	+		GFF7415	0.33	-1.4
3,645	+		GFF7415	0.33	-0.2
3,646	-		GFF7415	0.33	-0.7
3,646	-		GFF7415	0.33	-0.2
3,646	-		GFF7415	0.33	-0.1
3,646	-		GFF7415	0.33	-0.4
3,646	-		GFF7415	0.33	-0.5
3,646	-		GFF7415	0.33	-0.8
3,646	-		GFF7415	0.33	-0.3
3,646	-		GFF7415	0.33	-0.8
3,646	-		GFF7415	0.33	-0.4
3,646	-		GFF7415	0.33	-0.5
3,646	-		GFF7415	0.33	-1.6
3,646	-		GFF7415	0.33	-0.0
3,646	-		GFF7415	0.33	-0.9
3,652	+		GFF7415	0.33	+0.2
3,706	+		GFF7415	0.40	-0.6
3,707	-		GFF7415	0.40	-1.9
3,707	-		GFF7415	0.40	-0.3
3,726	+		GFF7415	0.43	+0.1
3,726	+		GFF7415	0.43	-0.3
3,726	+		GFF7415	0.43	-0.7
3,726	+		GFF7415	0.43	-0.2
3,726	+		GFF7415	0.43	-0.8
3,726	+		GFF7415	0.43	+0.1
3,726	+		GFF7415	0.43	-0.2
3,726	+		GFF7415	0.43	-0.7
3,726	+		GFF7415	0.43	-0.5
3,726	+		GFF7415	0.43	-0.2
3,727	-		GFF7415	0.43	-0.1
3,765	+		GFF7415	0.48	-0.9
3,765	+		GFF7415	0.48	+0.1
3,765	+		GFF7415	0.48	-0.7
3,766	-		GFF7415	0.48	-0.6
3,766	-		GFF7415	0.48	+0.8
3,883	-		GFF7415	0.63	-0.5
3,947	+		GFF7415	0.71	-1.0
3,947	+		GFF7415	0.71	+0.3
3,947	+		GFF7415	0.71	+1.6
3,948	-		GFF7415	0.71	+0.4
3,948	-		GFF7415	0.71	+1.0
3,964	+		GFF7415	0.73	-0.1
3,973	+		GFF7415	0.74	-0.1
3,973	+		GFF7415	0.74	+0.6
3,974	-		GFF7415	0.74	-0.5
3,974	-		GFF7415	0.74	-0.3
3,994	+		GFF7415	0.77	-0.8
3,994	+		GFF7415	0.77	-0.4
4,047	-		GFF7415	0.83	+0.2
4,067	+		GFF7415	0.86	-0.7
4,068	-		GFF7415	0.86	-1.2
4,068	-		GFF7415	0.86	-0.5
4,068	-		GFF7415	0.86	+0.7
4,149	+				+0.3
4,149	+				+0.7
4,149	+				+0.8
4,149	+				-0.9
4,150	-				+1.6
4,169	+				-0.7
4,169	+				-1.0
4,169	+				-0.1
4,169	+				-0.8
4,169	+				+3.0
4,169	+				+1.8
4,170	-				+0.3
4,170	-				-2.5
4,170	-				+0.5
4,170	-				-0.6
4,170	-				+0.4
4,216	+				-1.1
4,216	+				-0.4
4,216	+				-0.0
4,216	+				-0.3
4,216	+				-1.1
4,216	+				-0.1
4,216	+				-0.0
4,216	+				-0.0
4,216	+				+0.5
4,216	+				-0.9
4,216	+				-0.1
4,216	+				+1.1
4,216	+				+0.0
4,217	-				-0.3
4,217	-				-0.4
4,217	-				-0.6
4,217	-				-0.3
4,217	-				+1.2
4,232	+				+0.6
4,281	+		GFF7416	0.14	+0.1
4,282	-		GFF7416	0.14	-0.6
4,282	-		GFF7416	0.14	-0.1
4,378	+		GFF7416	0.30	-0.2
4,378	+		GFF7416	0.30	-0.2
4,378	+		GFF7416	0.30	+0.0
4,378	+		GFF7416	0.30	-0.8
4,378	+		GFF7416	0.30	-0.3
4,378	+		GFF7416	0.30	+0.1
4,379	-		GFF7416	0.30	-0.7
4,379	-		GFF7416	0.30	+0.1
4,379	-		GFF7416	0.30	-0.8
4,393	+		GFF7416	0.33	-0.8
4,394	-		GFF7416	0.33	-0.6
4,537	+		GFF7416	0.57	-0.6
4,537	+		GFF7416	0.57	-0.5
4,537	+		GFF7416	0.57	+2.0
4,537	+		GFF7416	0.57	-0.8
4,537	+		GFF7416	0.57	+0.2
4,537	+		GFF7416	0.57	-0.5
4,537	+		GFF7416	0.57	+0.2
4,538	-		GFF7416	0.57	+1.0
4,538	-		GFF7416	0.57	+2.0
4,538	-		GFF7416	0.57	-0.4
4,538	-		GFF7416	0.57	+0.2
4,654	+		GFF7416	0.77	-0.3
4,655	-		GFF7416	0.77	-0.4
4,655	-		GFF7416	0.77	-1.4
4,725	+		GFF7416	0.89	-0.6
4,725	+		GFF7416	0.89	+0.7
4,726	-		GFF7416	0.89	+0.4
4,726	-		GFF7416	0.89	+0.4
4,732	+				-0.3
4,732	+				-1.1
4,733	-				-0.4
4,742	+				-1.9
4,742	+				-0.7
4,743	-				+1.8
4,743	-				-0.4
4,743	-				-0.9
4,766	+				+0.8
4,766	+				+1.0
4,767	-				-1.6
4,767	-				-0.7
4,767	-				+0.5
4,767	-				+0.1
4,767	-				-0.4
4,820	-				-0.9
4,820	-				-1.0
4,917	+				+0.8
4,917	+				+0.3
4,917	+				-0.1
4,917	+				-0.5
4,917	+				-0.1
4,918	-				-0.0
4,918	-				-0.7
4,918	-				+0.1
4,918	-				-0.1
4,920	+				-1.0
4,921	-				+0.5
4,977	-				+1.8
5,010	+				-1.0
5,010	+				+0.5
5,010	+				-1.1
5,010	+				-0.8
5,011	-				+0.7
5,011	-				+0.6
5,011	-				-0.1
5,011	-				+0.2
5,011	-				-0.2
5,017	+				-0.6
5,017	+				-0.6
5,017	+				-0.5
5,018	-				+0.1
5,026	+				-1.9
5,027	-				+0.2
5,082	+				-0.4
5,083	-				-0.7
5,096	+				-0.1
5,097	-				+0.6
5,097	-				-0.3
5,097	-				-0.5
5,097	-				-0.8
5,097	-				-0.3