Strain Fitness in Variovorax sp. SCN45 around GFF7354

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7352 and GFF7353 overlap by 7 nucleotidesGFF7353 and GFF7354 overlap by 1 nucleotidesGFF7354 and GFF7355 are separated by 15 nucleotides GFF7352 - 1,2-phenylacetyl-CoA epoxidase, subunit D (EC 1.14.13.149), at 1,678 to 2,190 GFF7352 GFF7353 - 1,2-phenylacetyl-CoA epoxidase, subunit C (EC 1.14.13.149), at 2,184 to 2,945 GFF7353 GFF7354 - 1,2-phenylacetyl-CoA epoxidase, subunit B (EC 1.14.13.149), at 2,945 to 3,238 GFF7354 GFF7355 - 1,2-phenylacetyl-CoA epoxidase, subunit A (EC 1.14.13.149), at 3,254 to 4,243 GFF7355 Position (kb) 2 3 4Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2.016 kb on - strand, within GFF7352at 2.203 kb on + strandat 2.362 kb on - strand, within GFF7353at 2.395 kb on + strand, within GFF7353at 2.437 kb on + strand, within GFF7353at 2.437 kb on + strand, within GFF7353at 2.437 kb on + strand, within GFF7353at 2.437 kb on + strand, within GFF7353at 2.437 kb on + strand, within GFF7353at 2.438 kb on - strand, within GFF7353at 2.438 kb on - strand, within GFF7353at 2.611 kb on + strand, within GFF7353at 2.612 kb on - strand, within GFF7353at 2.632 kb on + strand, within GFF7353at 2.777 kb on - strand, within GFF7353at 2.777 kb on - strand, within GFF7353at 2.915 kb on - strandat 2.976 kb on + strand, within GFF7354at 2.976 kb on + strand, within GFF7354at 2.976 kb on + strand, within GFF7354at 2.994 kb on + strand, within GFF7354at 2.994 kb on + strand, within GFF7354at 3.111 kb on + strand, within GFF7354at 3.111 kb on + strand, within GFF7354at 3.226 kb on + strandat 3.226 kb on + strandat 3.227 kb on - strandat 3.393 kb on - strand, within GFF7355at 3.493 kb on - strand, within GFF7355at 3.765 kb on + strand, within GFF7355at 3.765 kb on + strand, within GFF7355at 3.774 kb on + strand, within GFF7355at 3.774 kb on + strand, within GFF7355at 3.868 kb on - strand, within GFF7355at 3.885 kb on + strand, within GFF7355at 3.885 kb on + strand, within GFF7355at 3.957 kb on + strand, within GFF7355at 3.957 kb on + strand, within GFF7355at 3.957 kb on + strand, within GFF7355at 3.957 kb on + strand, within GFF7355at 3.958 kb on - strand, within GFF7355at 3.961 kb on + strand, within GFF7355at 3.961 kb on + strand, within GFF7355at 3.961 kb on + strand, within GFF7355at 3.961 kb on + strand, within GFF7355at 3.961 kb on + strand, within GFF7355at 3.962 kb on - strand, within GFF7355at 3.963 kb on + strand, within GFF7355at 3.963 kb on + strand, within GFF7355at 3.963 kb on + strand, within GFF7355at 3.963 kb on + strand, within GFF7355at 3.963 kb on + strand, within GFF7355at 3.964 kb on - strand, within GFF7355at 3.964 kb on - strand, within GFF7355at 3.964 kb on - strand, within GFF7355at 4.056 kb on + strand, within GFF7355at 4.056 kb on + strand, within GFF7355at 4.056 kb on + strand, within GFF7355at 4.056 kb on + strand, within GFF7355at 4.057 kb on - strand, within GFF7355at 4.057 kb on - strand, within GFF7355

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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2,016 - GFF7352 0.66 +0.3
2,203 + +0.3
2,362 - GFF7353 0.23 +0.1
2,395 + GFF7353 0.28 -0.5
2,437 + GFF7353 0.33 -1.9
2,437 + GFF7353 0.33 +1.0
2,437 + GFF7353 0.33 -0.1
2,437 + GFF7353 0.33 +0.2
2,437 + GFF7353 0.33 +0.7
2,438 - GFF7353 0.33 +1.4
2,438 - GFF7353 0.33 -0.4
2,611 + GFF7353 0.56 -1.6
2,612 - GFF7353 0.56 -0.4
2,632 + GFF7353 0.59 +0.2
2,777 - GFF7353 0.78 -1.7
2,777 - GFF7353 0.78 -0.1
2,915 - +2.4
2,976 + GFF7354 0.11 -1.7
2,976 + GFF7354 0.11 -0.9
2,976 + GFF7354 0.11 +0.3
2,994 + GFF7354 0.17 -0.1
2,994 + GFF7354 0.17 -0.1
3,111 + GFF7354 0.56 -1.9
3,111 + GFF7354 0.56 +0.4
3,226 + +0.3
3,226 + -0.7
3,227 - -0.3
3,393 - GFF7355 0.14 +0.2
3,493 - GFF7355 0.24 +0.9
3,765 + GFF7355 0.52 -0.4
3,765 + GFF7355 0.52 -2.2
3,774 + GFF7355 0.53 -0.1
3,774 + GFF7355 0.53 -0.7
3,868 - GFF7355 0.62 +0.1
3,885 + GFF7355 0.64 -0.2
3,885 + GFF7355 0.64 +0.4
3,957 + GFF7355 0.71 +2.8
3,957 + GFF7355 0.71 +0.6
3,957 + GFF7355 0.71 -0.3
3,957 + GFF7355 0.71 +1.8
3,958 - GFF7355 0.71 -1.4
3,961 + GFF7355 0.71 -0.8
3,961 + GFF7355 0.71 -0.4
3,961 + GFF7355 0.71 -0.1
3,961 + GFF7355 0.71 -0.3
3,961 + GFF7355 0.71 -0.9
3,962 - GFF7355 0.72 -1.5
3,963 + GFF7355 0.72 -1.1
3,963 + GFF7355 0.72 +0.1
3,963 + GFF7355 0.72 +0.5
3,963 + GFF7355 0.72 +1.0
3,963 + GFF7355 0.72 +0.8
3,964 - GFF7355 0.72 -0.3
3,964 - GFF7355 0.72 +0.5
3,964 - GFF7355 0.72 -0.1
4,056 + GFF7355 0.81 +0.6
4,056 + GFF7355 0.81 +0.5
4,056 + GFF7355 0.81 +0.1
4,056 + GFF7355 0.81 +0.5
4,057 - GFF7355 0.81 -0.2
4,057 - GFF7355 0.81 +0.2

Or see this region's nucleotide sequence