Strain Fitness in Variovorax sp. SCN45 around GFF6802

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6800 and GFF6801 overlap by 4 nucleotidesGFF6801 and GFF6802 are separated by 97 nucleotidesGFF6802 and GFF6803 are separated by 41 nucleotides GFF6800 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 47,073 to 47,876 GFF6800 GFF6801 - Transcriptional regulator, GntR family, at 47,873 to 48,664 GFF6801 GFF6802 - Uncharacterized MFS-type transporter, at 48,762 to 50,102 GFF6802 GFF6803 - N-acyl homoserine lactone hydrolase, at 50,144 to 51,217 GFF6803 Position (kb) 48 49 50 51Strain fitness (log2 ratio) -2 -1 0 1 2at 47.876 kb on + strandat 47.876 kb on + strandat 47.876 kb on + strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.888 kb on + strandat 47.888 kb on + strandat 47.888 kb on + strandat 47.888 kb on + strandat 47.889 kb on - strandat 47.889 kb on - strandat 47.889 kb on - strandat 47.889 kb on - strandat 47.889 kb on - strandat 47.889 kb on - strandat 47.892 kb on + strandat 47.892 kb on + strandat 47.892 kb on + strandat 47.892 kb on + strandat 47.893 kb on - strandat 47.893 kb on - strandat 48.134 kb on + strand, within GFF6801at 48.134 kb on + strand, within GFF6801at 48.134 kb on + strand, within GFF6801at 48.134 kb on + strand, within GFF6801at 48.134 kb on + strand, within GFF6801at 48.134 kb on + strand, within GFF6801at 48.134 kb on + strand, within GFF6801at 48.134 kb on + strand, within GFF6801at 48.134 kb on + strand, within GFF6801at 48.134 kb on + strand, within GFF6801at 48.134 kb on + strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.177 kb on + strand, within GFF6801at 48.178 kb on - strand, within GFF6801at 48.178 kb on - strand, within GFF6801at 48.178 kb on - strand, within GFF6801at 48.210 kb on + strand, within GFF6801at 48.210 kb on + strand, within GFF6801at 48.211 kb on - strand, within GFF6801at 48.211 kb on - strand, within GFF6801at 48.211 kb on - strand, within GFF6801at 48.394 kb on + strand, within GFF6801at 48.563 kb on + strand, within GFF6801at 48.564 kb on - strand, within GFF6801at 48.564 kb on - strand, within GFF6801at 48.664 kb on + strandat 48.664 kb on + strandat 48.665 kb on - strandat 48.665 kb on - strandat 48.665 kb on - strandat 48.674 kb on + strandat 48.674 kb on + strandat 48.675 kb on - strandat 48.675 kb on - strandat 48.699 kb on + strandat 48.699 kb on + strandat 48.843 kb on + strandat 48.843 kb on + strandat 48.844 kb on - strandat 48.847 kb on + strandat 48.848 kb on - strandat 48.848 kb on - strandat 48.848 kb on - strandat 48.848 kb on - strandat 48.848 kb on - strandat 48.848 kb on - strandat 49.210 kb on + strand, within GFF6802at 49.210 kb on + strand, within GFF6802at 49.280 kb on - strand, within GFF6802at 49.280 kb on - strand, within GFF6802at 49.280 kb on - strand, within GFF6802at 49.672 kb on + strand, within GFF6802at 49.672 kb on + strand, within GFF6802at 49.673 kb on - strand, within GFF6802at 49.673 kb on - strand, within GFF6802at 49.673 kb on - strand, within GFF6802at 49.732 kb on + strand, within GFF6802at 49.732 kb on + strand, within GFF6802at 49.732 kb on + strand, within GFF6802at 49.733 kb on - strand, within GFF6802at 49.733 kb on - strand, within GFF6802at 49.733 kb on - strand, within GFF6802at 49.733 kb on - strand, within GFF6802at 49.945 kb on + strand, within GFF6802at 49.945 kb on + strand, within GFF6802at 49.946 kb on - strand, within GFF6802at 49.970 kb on - strandat 49.981 kb on + strandat 49.981 kb on + strandat 49.981 kb on + strandat 49.981 kb on + strandat 49.981 kb on + strandat 49.981 kb on + strandat 49.982 kb on - strandat 49.982 kb on - strandat 49.982 kb on - strandat 49.982 kb on - strandat 49.982 kb on - strandat 49.982 kb on - strandat 49.982 kb on - strandat 50.307 kb on + strand, within GFF6803at 50.307 kb on + strand, within GFF6803at 50.307 kb on + strand, within GFF6803at 50.307 kb on + strand, within GFF6803at 50.307 kb on + strand, within GFF6803at 50.307 kb on + strand, within GFF6803at 50.307 kb on + strand, within GFF6803at 50.308 kb on - strand, within GFF6803at 50.308 kb on - strand, within GFF6803at 50.308 kb on - strand, within GFF6803at 50.308 kb on - strand, within GFF6803at 50.510 kb on + strand, within GFF6803at 50.510 kb on + strand, within GFF6803at 50.510 kb on + strand, within GFF6803at 50.511 kb on - strand, within GFF6803at 50.598 kb on + strand, within GFF6803at 50.598 kb on + strand, within GFF6803at 50.599 kb on - strand, within GFF6803at 50.599 kb on - strand, within GFF6803at 50.739 kb on + strand, within GFF6803at 50.739 kb on + strand, within GFF6803at 50.739 kb on + strand, within GFF6803at 50.739 kb on + strand, within GFF6803at 50.739 kb on + strand, within GFF6803at 50.739 kb on + strand, within GFF6803at 50.739 kb on + strand, within GFF6803at 50.740 kb on - strand, within GFF6803at 50.740 kb on - strand, within GFF6803at 50.740 kb on - strand, within GFF6803at 50.866 kb on - strand, within GFF6803at 50.866 kb on - strand, within GFF6803at 50.866 kb on - strand, within GFF6803at 50.940 kb on + strand, within GFF6803at 50.941 kb on - strand, within GFF6803

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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47,876 + -0.8
47,876 + -0.9
47,876 + -0.2
47,877 - -0.6
47,877 - -0.9
47,877 - +0.4
47,877 - +0.2
47,877 - +0.6
47,877 - -0.2
47,877 - +0.2
47,877 - -1.9
47,877 - -0.3
47,877 - -1.7
47,877 - -0.5
47,877 - +0.4
47,888 + +0.1
47,888 + +0.2
47,888 + -1.3
47,888 + -0.3
47,889 - +0.1
47,889 - -0.0
47,889 - -0.7
47,889 - -0.7
47,889 - -0.2
47,889 - +0.3
47,892 + -1.4
47,892 + +0.0
47,892 + -0.3
47,892 + -0.1
47,893 - -0.0
47,893 - -2.2
48,134 + GFF6801 0.33 +0.0
48,134 + GFF6801 0.33 -0.3
48,134 + GFF6801 0.33 -0.4
48,134 + GFF6801 0.33 -0.2
48,134 + GFF6801 0.33 -0.5
48,134 + GFF6801 0.33 +0.9
48,134 + GFF6801 0.33 -1.0
48,134 + GFF6801 0.33 +0.6
48,134 + GFF6801 0.33 -1.3
48,134 + GFF6801 0.33 +0.1
48,134 + GFF6801 0.33 -0.4
48,135 - GFF6801 0.33 -1.4
48,135 - GFF6801 0.33 -0.6
48,135 - GFF6801 0.33 -0.2
48,135 - GFF6801 0.33 +1.5
48,135 - GFF6801 0.33 +0.5
48,135 - GFF6801 0.33 -0.4
48,135 - GFF6801 0.33 +0.6
48,135 - GFF6801 0.33 -0.2
48,135 - GFF6801 0.33 +0.4
48,135 - GFF6801 0.33 +1.0
48,135 - GFF6801 0.33 -0.9
48,135 - GFF6801 0.33 -0.9
48,135 - GFF6801 0.33 -2.7
48,177 + GFF6801 0.38 -0.8
48,178 - GFF6801 0.39 -0.4
48,178 - GFF6801 0.39 -0.8
48,178 - GFF6801 0.39 -0.9
48,210 + GFF6801 0.43 -0.8
48,210 + GFF6801 0.43 -1.9
48,211 - GFF6801 0.43 -1.0
48,211 - GFF6801 0.43 +0.7
48,211 - GFF6801 0.43 -0.1
48,394 + GFF6801 0.66 +0.2
48,563 + GFF6801 0.87 -0.1
48,564 - GFF6801 0.87 -0.6
48,564 - GFF6801 0.87 -1.1
48,664 + -0.0
48,664 + -0.1
48,665 - +0.3
48,665 - +0.6
48,665 - +0.0
48,674 + -0.6
48,674 + -0.1
48,675 - +0.2
48,675 - +0.7
48,699 + -1.0
48,699 + +0.5
48,843 + -0.0
48,843 + -0.6
48,844 - -0.1
48,847 + -0.7
48,848 - +0.1
48,848 - -0.5
48,848 - -0.3
48,848 - +0.5
48,848 - -2.1
48,848 - +0.0
49,210 + GFF6802 0.33 -1.0
49,210 + GFF6802 0.33 +0.2
49,280 - GFF6802 0.39 -0.5
49,280 - GFF6802 0.39 +0.7
49,280 - GFF6802 0.39 -1.6
49,672 + GFF6802 0.68 -0.6
49,672 + GFF6802 0.68 -1.1
49,673 - GFF6802 0.68 -0.2
49,673 - GFF6802 0.68 -0.6
49,673 - GFF6802 0.68 +0.2
49,732 + GFF6802 0.72 +0.1
49,732 + GFF6802 0.72 -0.4
49,732 + GFF6802 0.72 -1.1
49,733 - GFF6802 0.72 +0.2
49,733 - GFF6802 0.72 -0.3
49,733 - GFF6802 0.72 -1.3
49,733 - GFF6802 0.72 -2.2
49,945 + GFF6802 0.88 -0.3
49,945 + GFF6802 0.88 -2.4
49,946 - GFF6802 0.88 +0.6
49,970 - +0.1
49,981 + -0.9
49,981 + -0.7
49,981 + +0.3
49,981 + +0.0
49,981 + -0.5
49,981 + -1.3
49,982 - -0.3
49,982 - -0.5
49,982 - -0.5
49,982 - -0.5
49,982 - -0.1
49,982 - -0.1
49,982 - -0.1
50,307 + GFF6803 0.15 -1.0
50,307 + GFF6803 0.15 +0.7
50,307 + GFF6803 0.15 +1.1
50,307 + GFF6803 0.15 -0.9
50,307 + GFF6803 0.15 -0.5
50,307 + GFF6803 0.15 +0.3
50,307 + GFF6803 0.15 +0.0
50,308 - GFF6803 0.15 +0.1
50,308 - GFF6803 0.15 -0.3
50,308 - GFF6803 0.15 +1.1
50,308 - GFF6803 0.15 +0.5
50,510 + GFF6803 0.34 -0.2
50,510 + GFF6803 0.34 +1.5
50,510 + GFF6803 0.34 +0.0
50,511 - GFF6803 0.34 -1.1
50,598 + GFF6803 0.42 -0.0
50,598 + GFF6803 0.42 +0.6
50,599 - GFF6803 0.42 +0.1
50,599 - GFF6803 0.42 -0.3
50,739 + GFF6803 0.55 +0.0
50,739 + GFF6803 0.55 -0.2
50,739 + GFF6803 0.55 -1.7
50,739 + GFF6803 0.55 -2.5
50,739 + GFF6803 0.55 -1.7
50,739 + GFF6803 0.55 +1.5
50,739 + GFF6803 0.55 -0.4
50,740 - GFF6803 0.55 +0.3
50,740 - GFF6803 0.55 +0.5
50,740 - GFF6803 0.55 +0.6
50,866 - GFF6803 0.67 -0.2
50,866 - GFF6803 0.67 -0.1
50,866 - GFF6803 0.67 +0.4
50,940 + GFF6803 0.74 -0.2
50,941 - GFF6803 0.74 +2.5

Or see this region's nucleotide sequence