Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6740 and GFF6741 are separated by 224 nucleotides GFF6741 and GFF6742 are separated by 28 nucleotides GFF6742 and GFF6743 are separated by 60 nucleotides
GFF6740 - hypothetical protein, at 53,822 to 54,547
GFF6740
GFF6741 - UPF0053 inner membrane protein YoaE, at 54,772 to 56,340
GFF6741
GFF6742 - NAD(P)H-flavin oxidoreductase, at 56,369 to 56,977
GFF6742
GFF6743 - no description, at 57,038 to 57,673
GFF6743
Position (kb) 54
55
56
57 Strain fitness (log2 ratio) -2
-1
0
1
2 at 53.828 kb on - strand at 53.828 kb on - strand at 53.864 kb on + strand at 53.864 kb on + strand at 53.864 kb on + strand at 53.864 kb on + strand at 53.864 kb on + strand at 53.864 kb on + strand at 53.864 kb on + strand at 53.865 kb on - strand at 53.865 kb on - strand at 53.895 kb on - strand, within GFF6740 at 54.020 kb on + strand, within GFF6740 at 54.106 kb on - strand, within GFF6740 at 54.106 kb on - strand, within GFF6740 at 55.414 kb on + strand, within GFF6741 at 55.420 kb on + strand, within GFF6741 at 55.420 kb on + strand, within GFF6741 at 55.900 kb on + strand, within GFF6741 at 55.900 kb on + strand, within GFF6741 at 55.901 kb on - strand, within GFF6741 at 56.176 kb on + strand, within GFF6741 at 56.176 kb on + strand, within GFF6741 at 56.176 kb on + strand, within GFF6741 at 56.176 kb on + strand, within GFF6741 at 56.176 kb on + strand, within GFF6741 at 56.176 kb on + strand, within GFF6741 at 56.176 kb on + strand, within GFF6741 at 56.176 kb on + strand, within GFF6741 at 56.177 kb on - strand, within GFF6741 at 56.798 kb on + strand, within GFF6742 at 56.798 kb on + strand, within GFF6742 at 56.798 kb on + strand, within GFF6742 at 56.799 kb on - strand, within GFF6742 at 56.799 kb on - strand, within GFF6742 at 56.799 kb on - strand, within GFF6742 at 57.051 kb on + strand at 57.051 kb on + strand at 57.052 kb on - strand at 57.052 kb on - strand at 57.052 kb on - strand at 57.052 kb on - strand at 57.153 kb on + strand, within GFF6743 at 57.186 kb on + strand, within GFF6743 at 57.186 kb on + strand, within GFF6743 at 57.187 kb on - strand, within GFF6743 at 57.187 kb on - strand, within GFF6743 at 57.187 kb on - strand, within GFF6743 at 57.249 kb on + strand, within GFF6743 at 57.249 kb on + strand, within GFF6743 at 57.250 kb on - strand, within GFF6743 at 57.250 kb on - strand, within GFF6743 at 57.250 kb on - strand, within GFF6743 at 57.250 kb on - strand, within GFF6743 at 57.250 kb on - strand, within GFF6743 at 57.250 kb on - strand, within GFF6743
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 53,828 - +0.0 53,828 - +0.8 53,864 + -0.6 53,864 + -0.0 53,864 + -0.1 53,864 + -1.2 53,864 + -0.7 53,864 + +0.4 53,864 + +0.1 53,865 - -0.8 53,865 - -1.2 53,895 - GFF6740 0.10 -1.2 54,020 + GFF6740 0.27 +0.8 54,106 - GFF6740 0.39 -0.9 54,106 - GFF6740 0.39 +0.5 55,414 + GFF6741 0.41 +0.5 55,420 + GFF6741 0.41 -2.5 55,420 + GFF6741 0.41 -0.2 55,900 + GFF6741 0.72 -0.5 55,900 + GFF6741 0.72 -0.5 55,901 - GFF6741 0.72 -1.8 56,176 + GFF6741 0.89 +0.2 56,176 + GFF6741 0.89 +0.4 56,176 + GFF6741 0.89 -2.5 56,176 + GFF6741 0.89 -1.9 56,176 + GFF6741 0.89 -0.7 56,176 + GFF6741 0.89 -1.1 56,176 + GFF6741 0.89 -0.4 56,176 + GFF6741 0.89 -0.8 56,177 - GFF6741 0.90 +1.2 56,798 + GFF6742 0.70 -1.2 56,798 + GFF6742 0.70 -1.0 56,798 + GFF6742 0.70 -0.4 56,799 - GFF6742 0.71 -1.7 56,799 - GFF6742 0.71 +0.1 56,799 - GFF6742 0.71 -1.0 57,051 + +0.2 57,051 + +0.8 57,052 - -0.9 57,052 - +1.6 57,052 - -0.3 57,052 - -0.3 57,153 + GFF6743 0.18 -1.5 57,186 + GFF6743 0.23 -0.4 57,186 + GFF6743 0.23 -1.2 57,187 - GFF6743 0.23 -0.4 57,187 - GFF6743 0.23 -0.4 57,187 - GFF6743 0.23 -0.0 57,249 + GFF6743 0.33 -0.9 57,249 + GFF6743 0.33 +0.5 57,250 - GFF6743 0.33 -1.2 57,250 - GFF6743 0.33 -0.1 57,250 - GFF6743 0.33 +0.4 57,250 - GFF6743 0.33 +0.0 57,250 - GFF6743 0.33 +2.1 57,250 - GFF6743 0.33 -1.1
Or see this region's nucleotide sequence