Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6726 and GFF6727 overlap by 1 nucleotides GFF6727 and GFF6728 are separated by 18 nucleotides GFF6728 and GFF6729 are separated by 33 nucleotides GFF6729 and GFF6730 overlap by 4 nucleotides
GFF6726 - hypothetical protein, at 36,305 to 37,909
GFF6726
GFF6727 - no description, at 37,909 to 38,538
GFF6727
GFF6728 - Probable VANILLIN dehydrogenase oxidoreductase protein (EC 1.-.-.-), at 38,557 to 40,008
GFF6728
GFF6729 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 40,042 to 40,755
GFF6729
GFF6730 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 40,752 to 41,504
GFF6730
Position (kb) 38
39
40
41 Strain fitness (log2 ratio) -1
0
1 at 37.613 kb on + strand, within GFF6726 at 37.614 kb on - strand, within GFF6726 at 37.614 kb on - strand, within GFF6726 at 37.614 kb on - strand, within GFF6726 at 38.056 kb on + strand, within GFF6727 at 38.057 kb on - strand, within GFF6727 at 38.057 kb on - strand, within GFF6727 at 38.305 kb on + strand, within GFF6727 at 38.330 kb on - strand, within GFF6727 at 38.330 kb on - strand, within GFF6727 at 38.330 kb on - strand, within GFF6727 at 38.883 kb on - strand, within GFF6728 at 39.278 kb on + strand, within GFF6728 at 39.580 kb on + strand, within GFF6728 at 39.580 kb on + strand, within GFF6728 at 39.583 kb on + strand, within GFF6728 at 39.584 kb on - strand, within GFF6728 at 40.136 kb on + strand, within GFF6729 at 40.709 kb on + strand at 40.876 kb on + strand, within GFF6730 at 40.876 kb on + strand, within GFF6730 at 40.877 kb on - strand, within GFF6730 at 40.877 kb on - strand, within GFF6730
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 37,613 + GFF6726 0.81 -0.5 37,614 - GFF6726 0.82 -0.6 37,614 - GFF6726 0.82 -1.3 37,614 - GFF6726 0.82 -1.1 38,056 + GFF6727 0.23 -1.0 38,057 - GFF6727 0.23 -1.5 38,057 - GFF6727 0.23 +0.0 38,305 + GFF6727 0.63 -0.7 38,330 - GFF6727 0.67 +0.7 38,330 - GFF6727 0.67 +0.5 38,330 - GFF6727 0.67 -0.9 38,883 - GFF6728 0.22 +0.6 39,278 + GFF6728 0.50 +0.2 39,580 + GFF6728 0.70 +0.3 39,580 + GFF6728 0.70 +0.0 39,583 + GFF6728 0.71 -0.1 39,584 - GFF6728 0.71 +0.6 40,136 + GFF6729 0.13 -0.7 40,709 + -0.5 40,876 + GFF6730 0.16 -0.4 40,876 + GFF6730 0.16 -1.4 40,877 - GFF6730 0.17 +0.4 40,877 - GFF6730 0.17 -0.7
Or see this region's nucleotide sequence