Strain Fitness in Variovorax sp. SCN45 around GFF6603

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6602 and GFF6603 overlap by 4 nucleotidesGFF6603 and GFF6604 overlap by 4 nucleotidesGFF6604 and GFF6605 overlap by 4 nucleotidesGFF6605 and GFF6606 overlap by 4 nucleotides GFF6602 - Type IV secretory pathway, protease TraF, at 49,152 to 49,727 GFF6602 GFF6603 - Glycosidases, at 49,724 to 50,269 GFF6603 GFF6604 - FIG00457034: hypothetical protein, at 50,266 to 50,538 GFF6604 GFF6605 - ParA-like protein, at 50,535 to 51,173 GFF6605 GFF6606 - no description, at 51,170 to 51,397 GFF6606 Position (kb) 49 50 51Strain fitness (log2 ratio) -1 0 1at 48.767 kb on - strandat 49.041 kb on - strandat 49.041 kb on - strandat 49.041 kb on - strandat 49.108 kb on + strandat 49.383 kb on + strand, within GFF6602at 49.384 kb on - strand, within GFF6602at 49.384 kb on - strand, within GFF6602at 49.422 kb on - strand, within GFF6602at 49.422 kb on - strand, within GFF6602at 49.447 kb on + strand, within GFF6602at 49.565 kb on - strand, within GFF6602at 49.597 kb on + strand, within GFF6602at 49.597 kb on + strand, within GFF6602at 49.598 kb on - strand, within GFF6602at 49.598 kb on - strand, within GFF6602at 49.598 kb on - strand, within GFF6602at 49.715 kb on + strandat 49.715 kb on + strandat 49.773 kb on + strandat 49.919 kb on + strand, within GFF6603at 49.920 kb on - strand, within GFF6603at 49.920 kb on - strand, within GFF6603at 49.920 kb on - strand, within GFF6603at 50.020 kb on - strand, within GFF6603at 50.099 kb on + strand, within GFF6603at 50.100 kb on - strand, within GFF6603at 50.130 kb on + strand, within GFF6603at 50.130 kb on + strand, within GFF6603at 50.131 kb on - strand, within GFF6603at 50.131 kb on - strand, within GFF6603at 50.131 kb on - strand, within GFF6603at 50.131 kb on - strand, within GFF6603at 50.131 kb on - strand, within GFF6603at 50.154 kb on + strand, within GFF6603at 50.154 kb on + strand, within GFF6603at 50.154 kb on + strand, within GFF6603at 50.155 kb on - strand, within GFF6603at 50.155 kb on - strand, within GFF6603at 50.155 kb on - strand, within GFF6603at 50.414 kb on + strand, within GFF6604at 51.259 kb on + strand, within GFF6606at 51.259 kb on + strand, within GFF6606at 51.262 kb on + strand, within GFF6606at 51.263 kb on - strand, within GFF6606at 51.263 kb on - strand, within GFF6606at 51.263 kb on - strand, within GFF6606at 51.263 kb on - strand, within GFF6606at 51.266 kb on + strand, within GFF6606at 51.266 kb on + strand, within GFF6606at 51.266 kb on + strand, within GFF6606at 51.267 kb on - strand, within GFF6606at 51.267 kb on - strand, within GFF6606at 51.267 kb on - strand, within GFF6606at 51.267 kb on - strand, within GFF6606at 51.267 kb on - strand, within GFF6606at 51.267 kb on - strand, within GFF6606

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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48,767 - -1.7
49,041 - +0.4
49,041 - +0.5
49,041 - -0.1
49,108 + +0.5
49,383 + GFF6602 0.40 +0.2
49,384 - GFF6602 0.40 +0.5
49,384 - GFF6602 0.40 +1.1
49,422 - GFF6602 0.47 -0.5
49,422 - GFF6602 0.47 -1.5
49,447 + GFF6602 0.51 +0.9
49,565 - GFF6602 0.72 -0.2
49,597 + GFF6602 0.77 -0.1
49,597 + GFF6602 0.77 +0.9
49,598 - GFF6602 0.77 +0.9
49,598 - GFF6602 0.77 +0.5
49,598 - GFF6602 0.77 +0.1
49,715 + -0.5
49,715 + -0.7
49,773 + -0.2
49,919 + GFF6603 0.36 -0.3
49,920 - GFF6603 0.36 -0.3
49,920 - GFF6603 0.36 +0.1
49,920 - GFF6603 0.36 +1.0
50,020 - GFF6603 0.54 +1.5
50,099 + GFF6603 0.69 -1.1
50,100 - GFF6603 0.69 +0.1
50,130 + GFF6603 0.74 -1.5
50,130 + GFF6603 0.74 +0.4
50,131 - GFF6603 0.75 +0.5
50,131 - GFF6603 0.75 -0.7
50,131 - GFF6603 0.75 +0.6
50,131 - GFF6603 0.75 +0.5
50,131 - GFF6603 0.75 +0.0
50,154 + GFF6603 0.79 -0.3
50,154 + GFF6603 0.79 -1.1
50,154 + GFF6603 0.79 -0.4
50,155 - GFF6603 0.79 +0.3
50,155 - GFF6603 0.79 -0.5
50,155 - GFF6603 0.79 +1.1
50,414 + GFF6604 0.54 -0.2
51,259 + GFF6606 0.39 +0.1
51,259 + GFF6606 0.39 -0.4
51,262 + GFF6606 0.40 -0.2
51,263 - GFF6606 0.41 -1.1
51,263 - GFF6606 0.41 -0.1
51,263 - GFF6606 0.41 -0.7
51,263 - GFF6606 0.41 -0.1
51,266 + GFF6606 0.42 +0.5
51,266 + GFF6606 0.42 +0.4
51,266 + GFF6606 0.42 -0.3
51,267 - GFF6606 0.43 -0.5
51,267 - GFF6606 0.43 +0.7
51,267 - GFF6606 0.43 -0.2
51,267 - GFF6606 0.43 +0.8
51,267 - GFF6606 0.43 +0.5
51,267 - GFF6606 0.43 -0.1

Or see this region's nucleotide sequence