Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5985 and GFF5986 are separated by 77 nucleotides GFF5986 and GFF5987 are separated by 67 nucleotides GFF5987 and GFF5988 are separated by 16 nucleotides
GFF5985 - dicarboxylic acid transporter PcaT, at 38,855 to 40,090
GFF5985
GFF5986 - hypothetical protein, at 40,168 to 40,761
GFF5986
GFF5987 - Response regulator BaeR, at 40,829 to 41,536
GFF5987
GFF5988 - Sensory histidine kinase BaeS, at 41,553 to 43,034
GFF5988
Position (kb) 40
41 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 39.206 kb on + strand, within GFF5985 at 39.224 kb on + strand, within GFF5985 at 39.224 kb on + strand, within GFF5985 at 39.224 kb on + strand, within GFF5985 at 39.224 kb on + strand, within GFF5985 at 39.225 kb on - strand, within GFF5985 at 39.225 kb on - strand, within GFF5985 at 39.578 kb on + strand, within GFF5985 at 39.578 kb on + strand, within GFF5985 at 39.590 kb on + strand, within GFF5985 at 39.632 kb on + strand, within GFF5985 at 39.633 kb on - strand, within GFF5985 at 39.633 kb on - strand, within GFF5985 at 39.633 kb on - strand, within GFF5985 at 39.633 kb on - strand, within GFF5985 at 39.659 kb on + strand, within GFF5985 at 39.660 kb on - strand, within GFF5985 at 39.660 kb on - strand, within GFF5985 at 39.660 kb on - strand, within GFF5985 at 39.660 kb on - strand, within GFF5985 at 39.660 kb on - strand, within GFF5985 at 39.843 kb on - strand, within GFF5985 at 39.843 kb on - strand, within GFF5985 at 39.956 kb on + strand, within GFF5985 at 40.007 kb on + strand at 40.071 kb on - strand at 40.094 kb on + strand at 40.094 kb on + strand at 40.094 kb on + strand at 40.141 kb on + strand at 40.141 kb on + strand at 40.141 kb on + strand at 40.142 kb on - strand at 40.142 kb on - strand at 40.142 kb on - strand at 40.142 kb on - strand at 40.142 kb on - strand at 40.193 kb on + strand at 40.193 kb on + strand at 40.193 kb on + strand at 40.220 kb on - strand at 40.435 kb on + strand, within GFF5986 at 40.633 kb on + strand, within GFF5986 at 40.633 kb on + strand, within GFF5986 at 40.633 kb on + strand, within GFF5986 at 40.633 kb on + strand, within GFF5986 at 40.699 kb on - strand, within GFF5986 at 40.699 kb on - strand, within GFF5986 at 40.699 kb on - strand, within GFF5986 at 40.699 kb on - strand, within GFF5986 at 40.774 kb on + strand at 40.775 kb on - strand at 40.846 kb on + strand at 40.846 kb on + strand at 40.847 kb on - strand at 40.847 kb on - strand at 41.086 kb on + strand, within GFF5987 at 41.086 kb on + strand, within GFF5987 at 41.087 kb on - strand, within GFF5987 at 41.088 kb on + strand, within GFF5987 at 41.088 kb on + strand, within GFF5987 at 41.088 kb on + strand, within GFF5987 at 41.205 kb on + strand, within GFF5987 at 41.205 kb on + strand, within GFF5987 at 41.206 kb on - strand, within GFF5987 at 41.439 kb on + strand, within GFF5987 at 41.439 kb on + strand, within GFF5987 at 41.440 kb on - strand, within GFF5987
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 39,206 + GFF5985 0.28 -0.3 39,224 + GFF5985 0.30 -0.9 39,224 + GFF5985 0.30 +0.0 39,224 + GFF5985 0.30 -2.8 39,224 + GFF5985 0.30 +0.6 39,225 - GFF5985 0.30 -0.2 39,225 - GFF5985 0.30 -0.0 39,578 + GFF5985 0.58 +1.1 39,578 + GFF5985 0.58 +0.4 39,590 + GFF5985 0.59 +1.4 39,632 + GFF5985 0.63 +1.2 39,633 - GFF5985 0.63 +0.2 39,633 - GFF5985 0.63 +1.3 39,633 - GFF5985 0.63 -0.3 39,633 - GFF5985 0.63 -0.4 39,659 + GFF5985 0.65 -0.0 39,660 - GFF5985 0.65 -0.4 39,660 - GFF5985 0.65 -1.0 39,660 - GFF5985 0.65 -0.6 39,660 - GFF5985 0.65 +0.6 39,660 - GFF5985 0.65 +0.3 39,843 - GFF5985 0.80 -0.7 39,843 - GFF5985 0.80 +0.0 39,956 + GFF5985 0.89 -1.7 40,007 + -0.4 40,071 - -0.2 40,094 + -0.6 40,094 + +1.2 40,094 + -0.2 40,141 + +0.6 40,141 + -0.2 40,141 + -0.1 40,142 - -0.6 40,142 - +0.1 40,142 - +0.6 40,142 - +0.3 40,142 - -0.1 40,193 + +0.6 40,193 + +0.0 40,193 + -1.1 40,220 - -0.1 40,435 + GFF5986 0.45 +1.0 40,633 + GFF5986 0.78 -0.8 40,633 + GFF5986 0.78 -0.6 40,633 + GFF5986 0.78 -0.2 40,633 + GFF5986 0.78 -0.3 40,699 - GFF5986 0.89 +0.1 40,699 - GFF5986 0.89 -1.3 40,699 - GFF5986 0.89 -1.0 40,699 - GFF5986 0.89 -1.4 40,774 + +0.1 40,775 - +1.2 40,846 + -0.7 40,846 + +0.0 40,847 - +0.2 40,847 - -1.4 41,086 + GFF5987 0.36 -0.9 41,086 + GFF5987 0.36 +0.5 41,087 - GFF5987 0.36 +0.9 41,088 + GFF5987 0.37 -0.6 41,088 + GFF5987 0.37 -0.8 41,088 + GFF5987 0.37 -0.3 41,205 + GFF5987 0.53 -0.7 41,205 + GFF5987 0.53 -0.1 41,206 - GFF5987 0.53 -1.0 41,439 + GFF5987 0.86 +0.3 41,439 + GFF5987 0.86 +0.4 41,440 - GFF5987 0.86 -1.6
Or see this region's nucleotide sequence