Strain Fitness in Variovorax sp. SCN45 around GFF5398

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5396 and GFF5397 are separated by 16 nucleotidesGFF5397 and GFF5398 are separated by 47 nucleotidesGFF5398 and GFF5399 are separated by 14 nucleotidesGFF5399 and GFF5400 are separated by 11 nucleotides GFF5396 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 21,293 to 21,949 GFF5396 GFF5397 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 21,966 to 22,649 GFF5397 GFF5398 - L-fuconate dehydratase (EC 4.2.1.68), type 2, at 22,697 to 23,929 GFF5398 GFF5399 - Altronate dehydratase (EC 4.2.1.7), at 23,944 to 24,258 GFF5399 GFF5400 - Demethylmenaquinone methyltransferase-like protein, at 24,270 to 24,944 GFF5400 Position (kb) 22 23 24Strain fitness (log2 ratio) -2 -1 0 1 2at 21.752 kb on + strand, within GFF5396at 21.752 kb on + strand, within GFF5396at 21.752 kb on + strand, within GFF5396at 21.753 kb on - strand, within GFF5396at 21.753 kb on - strand, within GFF5396at 21.786 kb on + strand, within GFF5396at 21.786 kb on + strand, within GFF5396at 21.787 kb on - strand, within GFF5396at 21.787 kb on - strand, within GFF5396at 22.042 kb on + strand, within GFF5397at 22.042 kb on + strand, within GFF5397at 22.042 kb on + strand, within GFF5397at 22.043 kb on - strand, within GFF5397at 22.043 kb on - strand, within GFF5397at 22.053 kb on + strand, within GFF5397at 22.053 kb on + strand, within GFF5397at 22.053 kb on + strand, within GFF5397at 22.053 kb on + strand, within GFF5397at 22.054 kb on - strand, within GFF5397at 22.054 kb on - strand, within GFF5397at 22.054 kb on - strand, within GFF5397at 22.054 kb on - strand, within GFF5397at 22.054 kb on - strand, within GFF5397at 22.057 kb on + strand, within GFF5397at 22.057 kb on + strand, within GFF5397at 22.057 kb on + strand, within GFF5397at 22.057 kb on + strand, within GFF5397at 22.057 kb on + strand, within GFF5397at 22.057 kb on + strand, within GFF5397at 22.057 kb on + strand, within GFF5397at 22.057 kb on + strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.209 kb on + strand, within GFF5397at 22.209 kb on + strand, within GFF5397at 22.209 kb on + strand, within GFF5397at 22.209 kb on + strand, within GFF5397at 22.209 kb on + strand, within GFF5397at 22.209 kb on + strand, within GFF5397at 22.209 kb on + strand, within GFF5397at 22.210 kb on - strand, within GFF5397at 22.339 kb on + strand, within GFF5397at 22.339 kb on + strand, within GFF5397at 22.429 kb on + strand, within GFF5397at 22.429 kb on + strand, within GFF5397at 22.429 kb on + strand, within GFF5397at 22.429 kb on + strand, within GFF5397at 22.429 kb on + strand, within GFF5397at 22.429 kb on + strand, within GFF5397at 22.429 kb on + strand, within GFF5397at 22.429 kb on + strand, within GFF5397at 22.429 kb on + strand, within GFF5397at 22.430 kb on - strand, within GFF5397at 22.430 kb on - strand, within GFF5397at 22.430 kb on - strand, within GFF5397at 22.430 kb on - strand, within GFF5397at 22.430 kb on - strand, within GFF5397at 22.430 kb on - strand, within GFF5397at 22.430 kb on - strand, within GFF5397at 22.430 kb on - strand, within GFF5397at 22.471 kb on + strand, within GFF5397at 22.472 kb on - strand, within GFF5397at 22.472 kb on - strand, within GFF5397at 22.642 kb on + strandat 22.643 kb on - strandat 22.643 kb on - strandat 22.643 kb on - strandat 22.643 kb on - strandat 22.752 kb on + strandat 22.752 kb on + strandat 22.752 kb on + strandat 22.752 kb on + strandat 22.752 kb on + strandat 22.752 kb on + strandat 22.752 kb on + strandat 22.752 kb on + strandat 22.752 kb on + strandat 22.752 kb on + strandat 22.752 kb on + strandat 22.753 kb on - strandat 22.753 kb on - strandat 22.753 kb on - strandat 22.753 kb on - strandat 22.753 kb on - strandat 22.753 kb on - strandat 22.753 kb on - strandat 22.753 kb on - strandat 22.753 kb on - strandat 22.753 kb on - strandat 22.753 kb on - strandat 22.917 kb on + strand, within GFF5398at 22.918 kb on - strand, within GFF5398at 22.918 kb on - strand, within GFF5398at 23.100 kb on + strand, within GFF5398at 23.100 kb on + strand, within GFF5398at 23.100 kb on + strand, within GFF5398at 23.100 kb on + strand, within GFF5398at 23.101 kb on - strand, within GFF5398at 23.101 kb on - strand, within GFF5398at 23.101 kb on - strand, within GFF5398at 23.101 kb on - strand, within GFF5398at 23.172 kb on + strand, within GFF5398at 23.172 kb on + strand, within GFF5398at 23.173 kb on - strand, within GFF5398at 23.256 kb on + strand, within GFF5398at 23.256 kb on + strand, within GFF5398at 23.256 kb on + strand, within GFF5398at 23.256 kb on + strand, within GFF5398at 23.256 kb on + strand, within GFF5398at 23.256 kb on + strand, within GFF5398at 23.256 kb on + strand, within GFF5398at 23.256 kb on + strand, within GFF5398at 23.257 kb on - strand, within GFF5398at 23.257 kb on - strand, within GFF5398at 23.257 kb on - strand, within GFF5398at 23.257 kb on - strand, within GFF5398at 23.259 kb on + strand, within GFF5398at 23.260 kb on - strand, within GFF5398at 23.260 kb on - strand, within GFF5398at 23.733 kb on + strand, within GFF5398at 23.733 kb on + strand, within GFF5398at 23.734 kb on - strand, within GFF5398at 23.745 kb on + strand, within GFF5398at 23.847 kb on + strandat 23.847 kb on + strandat 23.848 kb on - strandat 23.848 kb on - strandat 23.961 kb on - strandat 23.984 kb on + strand, within GFF5399at 23.984 kb on + strand, within GFF5399at 23.984 kb on + strand, within GFF5399at 23.985 kb on - strand, within GFF5399at 23.985 kb on - strand, within GFF5399at 23.985 kb on - strand, within GFF5399at 23.985 kb on - strand, within GFF5399at 24.062 kb on + strand, within GFF5399at 24.062 kb on + strand, within GFF5399at 24.062 kb on + strand, within GFF5399at 24.062 kb on + strand, within GFF5399at 24.062 kb on + strand, within GFF5399at 24.063 kb on - strand, within GFF5399at 24.283 kb on + strandat 24.292 kb on + strandat 24.292 kb on + strandat 24.292 kb on + strandat 24.292 kb on + strandat 24.292 kb on + strandat 24.293 kb on - strandat 24.293 kb on - strandat 24.293 kb on - strandat 24.293 kb on - strandat 24.493 kb on - strand, within GFF5400at 24.499 kb on + strand, within GFF5400at 24.500 kb on - strand, within GFF5400at 24.500 kb on - strand, within GFF5400at 24.526 kb on + strand, within GFF5400at 24.526 kb on + strand, within GFF5400at 24.526 kb on + strand, within GFF5400at 24.526 kb on + strand, within GFF5400at 24.527 kb on - strand, within GFF5400at 24.527 kb on - strand, within GFF5400at 24.527 kb on - strand, within GFF5400at 24.527 kb on - strand, within GFF5400at 24.883 kb on + strandat 24.883 kb on + strandat 24.884 kb on - strandat 24.884 kb on - strandat 24.884 kb on - strandat 24.884 kb on - strandat 24.884 kb on - strandat 24.884 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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21,752 + GFF5396 0.70 -0.4
21,752 + GFF5396 0.70 -0.5
21,752 + GFF5396 0.70 +0.1
21,753 - GFF5396 0.70 -1.0
21,753 - GFF5396 0.70 +0.1
21,786 + GFF5396 0.75 -0.5
21,786 + GFF5396 0.75 -1.0
21,787 - GFF5396 0.75 -0.0
21,787 - GFF5396 0.75 +0.4
22,042 + GFF5397 0.11 +0.5
22,042 + GFF5397 0.11 +0.3
22,042 + GFF5397 0.11 -1.1
22,043 - GFF5397 0.11 +1.8
22,043 - GFF5397 0.11 +0.9
22,053 + GFF5397 0.13 -0.6
22,053 + GFF5397 0.13 +0.3
22,053 + GFF5397 0.13 -1.4
22,053 + GFF5397 0.13 -0.6
22,054 - GFF5397 0.13 +1.8
22,054 - GFF5397 0.13 -0.5
22,054 - GFF5397 0.13 +0.1
22,054 - GFF5397 0.13 -0.7
22,054 - GFF5397 0.13 +0.6
22,057 + GFF5397 0.13 -1.5
22,057 + GFF5397 0.13 -0.3
22,057 + GFF5397 0.13 -1.1
22,057 + GFF5397 0.13 +0.3
22,057 + GFF5397 0.13 +2.4
22,057 + GFF5397 0.13 +0.3
22,057 + GFF5397 0.13 +1.2
22,057 + GFF5397 0.13 +1.1
22,058 - GFF5397 0.13 +0.8
22,058 - GFF5397 0.13 -0.3
22,058 - GFF5397 0.13 -0.7
22,058 - GFF5397 0.13 -0.5
22,058 - GFF5397 0.13 -0.2
22,058 - GFF5397 0.13 -0.4
22,058 - GFF5397 0.13 -1.7
22,058 - GFF5397 0.13 -0.6
22,058 - GFF5397 0.13 +0.1
22,058 - GFF5397 0.13 -0.7
22,058 - GFF5397 0.13 +0.7
22,209 + GFF5397 0.36 -1.4
22,209 + GFF5397 0.36 -0.9
22,209 + GFF5397 0.36 +0.2
22,209 + GFF5397 0.36 -0.7
22,209 + GFF5397 0.36 -0.5
22,209 + GFF5397 0.36 -2.1
22,209 + GFF5397 0.36 -0.2
22,210 - GFF5397 0.36 +2.0
22,339 + GFF5397 0.55 -1.7
22,339 + GFF5397 0.55 -1.2
22,429 + GFF5397 0.68 -0.4
22,429 + GFF5397 0.68 -0.9
22,429 + GFF5397 0.68 +0.6
22,429 + GFF5397 0.68 -0.1
22,429 + GFF5397 0.68 +0.6
22,429 + GFF5397 0.68 +0.3
22,429 + GFF5397 0.68 -1.1
22,429 + GFF5397 0.68 -0.6
22,429 + GFF5397 0.68 -0.4
22,430 - GFF5397 0.68 -0.1
22,430 - GFF5397 0.68 -0.8
22,430 - GFF5397 0.68 -0.7
22,430 - GFF5397 0.68 +0.1
22,430 - GFF5397 0.68 +0.2
22,430 - GFF5397 0.68 -1.6
22,430 - GFF5397 0.68 -0.5
22,430 - GFF5397 0.68 -0.4
22,471 + GFF5397 0.74 -0.5
22,472 - GFF5397 0.74 -1.8
22,472 - GFF5397 0.74 -0.2
22,642 + -1.1
22,643 - -0.8
22,643 - -0.1
22,643 - -0.2
22,643 - +2.4
22,752 + +0.6
22,752 + +0.1
22,752 + +0.1
22,752 + +0.4
22,752 + -1.4
22,752 + +0.1
22,752 + -0.6
22,752 + +0.5
22,752 + +0.4
22,752 + +0.2
22,752 + -0.9
22,753 - -0.8
22,753 - -0.8
22,753 - -0.4
22,753 - -0.3
22,753 - +0.1
22,753 - -0.1
22,753 - -0.7
22,753 - +0.8
22,753 - -0.4
22,753 - -1.4
22,753 - -0.6
22,917 + GFF5398 0.18 -0.4
22,918 - GFF5398 0.18 -0.4
22,918 - GFF5398 0.18 -0.3
23,100 + GFF5398 0.33 -2.1
23,100 + GFF5398 0.33 +0.5
23,100 + GFF5398 0.33 -0.3
23,100 + GFF5398 0.33 -0.4
23,101 - GFF5398 0.33 -0.0
23,101 - GFF5398 0.33 -0.8
23,101 - GFF5398 0.33 +0.5
23,101 - GFF5398 0.33 -0.2
23,172 + GFF5398 0.39 -0.0
23,172 + GFF5398 0.39 -0.3
23,173 - GFF5398 0.39 -0.5
23,256 + GFF5398 0.45 -0.5
23,256 + GFF5398 0.45 +1.4
23,256 + GFF5398 0.45 -0.9
23,256 + GFF5398 0.45 -0.5
23,256 + GFF5398 0.45 -0.2
23,256 + GFF5398 0.45 -0.8
23,256 + GFF5398 0.45 -1.7
23,256 + GFF5398 0.45 -0.3
23,257 - GFF5398 0.45 +1.2
23,257 - GFF5398 0.45 -0.5
23,257 - GFF5398 0.45 -0.6
23,257 - GFF5398 0.45 +0.2
23,259 + GFF5398 0.46 -0.8
23,260 - GFF5398 0.46 -2.7
23,260 - GFF5398 0.46 -1.3
23,733 + GFF5398 0.84 -0.3
23,733 + GFF5398 0.84 +0.1
23,734 - GFF5398 0.84 +0.2
23,745 + GFF5398 0.85 -0.2
23,847 + +0.1
23,847 + +0.2
23,848 - -1.0
23,848 - -0.9
23,961 - +0.3
23,984 + GFF5399 0.13 +0.8
23,984 + GFF5399 0.13 +1.3
23,984 + GFF5399 0.13 -0.5
23,985 - GFF5399 0.13 +0.2
23,985 - GFF5399 0.13 +0.1
23,985 - GFF5399 0.13 -0.2
23,985 - GFF5399 0.13 -1.9
24,062 + GFF5399 0.37 -0.1
24,062 + GFF5399 0.37 +0.2
24,062 + GFF5399 0.37 +0.6
24,062 + GFF5399 0.37 -0.3
24,062 + GFF5399 0.37 -1.3
24,063 - GFF5399 0.38 +0.2
24,283 + -1.1
24,292 + +0.2
24,292 + -1.2
24,292 + +0.3
24,292 + +0.3
24,292 + -0.1
24,293 - -0.3
24,293 - -0.3
24,293 - -1.7
24,293 - -0.6
24,493 - GFF5400 0.33 -0.1
24,499 + GFF5400 0.34 -0.5
24,500 - GFF5400 0.34 -0.8
24,500 - GFF5400 0.34 -0.4
24,526 + GFF5400 0.38 -0.4
24,526 + GFF5400 0.38 +1.2
24,526 + GFF5400 0.38 +0.4
24,526 + GFF5400 0.38 -0.4
24,527 - GFF5400 0.38 -0.1
24,527 - GFF5400 0.38 -0.0
24,527 - GFF5400 0.38 +0.8
24,527 - GFF5400 0.38 -0.3
24,883 + +0.3
24,883 + -0.7
24,884 - -0.2
24,884 - +0.1
24,884 - -0.4
24,884 - +0.6
24,884 - +0.1
24,884 - -0.2

Or see this region's nucleotide sequence