Strain Fitness in Variovorax sp. SCN45 around GFF5132

Experiment: M9 with Supernatant from Cyptococcus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5130 and GFF5131 are separated by 17 nucleotidesGFF5131 and GFF5132 are separated by 52 nucleotidesGFF5132 and GFF5133 are separated by 168 nucleotides GFF5130 - hypothetical protein, at 229,735 to 230,991 GFF5130 GFF5131 - no description, at 231,009 to 231,443 GFF5131 GFF5132 - no description, at 231,496 to 232,404 GFF5132 GFF5133 - hypothetical protein, at 232,573 to 233,625 GFF5133 Position (kb) 231 232 233Strain fitness (log2 ratio) -2 -1 0 1 2 3at 230.551 kb on + strand, within GFF5130at 230.551 kb on + strand, within GFF5130at 230.551 kb on + strand, within GFF5130at 230.551 kb on + strand, within GFF5130at 230.552 kb on - strand, within GFF5130at 230.552 kb on - strand, within GFF5130at 230.669 kb on - strand, within GFF5130at 230.669 kb on - strand, within GFF5130at 230.669 kb on - strand, within GFF5130at 231.040 kb on - strandat 231.055 kb on + strand, within GFF5131at 231.144 kb on + strand, within GFF5131at 231.144 kb on + strand, within GFF5131at 231.144 kb on + strand, within GFF5131at 231.144 kb on + strand, within GFF5131at 231.144 kb on + strand, within GFF5131at 231.144 kb on + strand, within GFF5131at 231.144 kb on + strand, within GFF5131at 231.144 kb on + strand, within GFF5131at 231.144 kb on + strand, within GFF5131at 231.145 kb on - strand, within GFF5131at 231.246 kb on + strand, within GFF5131at 231.246 kb on + strand, within GFF5131at 231.246 kb on + strand, within GFF5131at 231.246 kb on + strand, within GFF5131at 231.246 kb on + strand, within GFF5131at 231.247 kb on - strand, within GFF5131at 231.247 kb on - strand, within GFF5131at 231.247 kb on - strand, within GFF5131at 231.247 kb on - strand, within GFF5131at 231.247 kb on - strand, within GFF5131at 231.247 kb on - strand, within GFF5131at 231.247 kb on - strand, within GFF5131at 231.247 kb on - strand, within GFF5131at 231.247 kb on - strand, within GFF5131at 231.333 kb on + strand, within GFF5131at 231.333 kb on + strand, within GFF5131at 231.333 kb on + strand, within GFF5131at 231.333 kb on + strand, within GFF5131at 231.333 kb on + strand, within GFF5131at 231.333 kb on + strand, within GFF5131at 231.333 kb on + strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.363 kb on + strand, within GFF5131at 231.364 kb on - strand, within GFF5131at 231.364 kb on - strand, within GFF5131at 231.460 kb on + strandat 231.460 kb on + strandat 231.460 kb on + strandat 231.461 kb on - strandat 231.461 kb on - strandat 231.461 kb on - strandat 231.461 kb on - strandat 231.461 kb on - strandat 231.461 kb on - strandat 231.461 kb on - strandat 231.461 kb on - strandat 231.530 kb on - strandat 231.530 kb on - strandat 231.542 kb on + strandat 231.542 kb on + strandat 231.543 kb on - strandat 231.543 kb on - strandat 231.565 kb on + strandat 231.565 kb on + strandat 231.566 kb on - strandat 231.566 kb on - strandat 231.566 kb on - strandat 231.712 kb on + strand, within GFF5132at 231.712 kb on + strand, within GFF5132at 231.712 kb on + strand, within GFF5132at 231.712 kb on + strand, within GFF5132at 231.713 kb on - strand, within GFF5132at 231.713 kb on - strand, within GFF5132at 231.901 kb on + strand, within GFF5132at 231.944 kb on + strand, within GFF5132at 231.944 kb on + strand, within GFF5132at 231.944 kb on + strand, within GFF5132at 231.945 kb on - strand, within GFF5132at 231.945 kb on - strand, within GFF5132at 231.994 kb on + strand, within GFF5132at 231.994 kb on + strand, within GFF5132at 231.994 kb on + strand, within GFF5132at 231.994 kb on + strand, within GFF5132at 231.994 kb on + strand, within GFF5132at 231.994 kb on + strand, within GFF5132at 231.995 kb on - strand, within GFF5132at 232.118 kb on + strand, within GFF5132at 232.129 kb on + strand, within GFF5132at 232.129 kb on + strand, within GFF5132at 232.129 kb on + strand, within GFF5132at 232.129 kb on + strand, within GFF5132at 232.130 kb on - strand, within GFF5132at 232.130 kb on - strand, within GFF5132at 232.233 kb on + strand, within GFF5132at 232.233 kb on + strand, within GFF5132at 232.233 kb on + strand, within GFF5132at 232.233 kb on + strand, within GFF5132at 232.233 kb on + strand, within GFF5132at 232.234 kb on - strand, within GFF5132at 232.234 kb on - strand, within GFF5132at 232.239 kb on - strand, within GFF5132at 232.373 kb on + strandat 232.373 kb on + strandat 232.373 kb on + strandat 232.374 kb on - strandat 232.374 kb on - strandat 232.417 kb on + strandat 232.417 kb on + strandat 232.417 kb on + strandat 232.418 kb on - strandat 232.420 kb on - strandat 232.420 kb on - strandat 232.420 kb on - strandat 232.532 kb on + strandat 232.533 kb on - strandat 232.533 kb on - strandat 232.533 kb on - strandat 232.535 kb on + strandat 232.535 kb on + strandat 232.535 kb on + strandat 232.535 kb on + strandat 232.535 kb on + strandat 232.535 kb on + strandat 232.536 kb on - strandat 232.536 kb on - strandat 232.560 kb on + strandat 232.618 kb on + strandat 232.618 kb on + strandat 232.618 kb on + strandat 232.619 kb on - strandat 232.649 kb on + strandat 232.649 kb on + strandat 232.649 kb on + strandat 232.650 kb on - strandat 232.724 kb on + strand, within GFF5133at 232.724 kb on + strand, within GFF5133at 232.724 kb on + strand, within GFF5133at 232.724 kb on + strand, within GFF5133at 232.724 kb on + strand, within GFF5133at 232.724 kb on + strand, within GFF5133at 232.724 kb on + strand, within GFF5133at 232.724 kb on + strand, within GFF5133at 232.724 kb on + strand, within GFF5133at 232.724 kb on + strand, within GFF5133at 232.725 kb on - strand, within GFF5133at 232.725 kb on - strand, within GFF5133at 232.725 kb on - strand, within GFF5133at 232.725 kb on - strand, within GFF5133at 232.725 kb on - strand, within GFF5133at 232.725 kb on - strand, within GFF5133at 232.836 kb on - strand, within GFF5133at 232.836 kb on - strand, within GFF5133at 232.836 kb on - strand, within GFF5133at 232.839 kb on + strand, within GFF5133at 232.839 kb on + strand, within GFF5133at 232.839 kb on + strand, within GFF5133at 232.839 kb on + strand, within GFF5133at 232.839 kb on + strand, within GFF5133at 232.839 kb on + strand, within GFF5133at 232.839 kb on + strand, within GFF5133at 232.839 kb on + strand, within GFF5133at 232.840 kb on - strand, within GFF5133at 232.840 kb on - strand, within GFF5133at 232.840 kb on - strand, within GFF5133at 232.840 kb on - strand, within GFF5133at 232.840 kb on - strand, within GFF5133at 232.840 kb on - strand, within GFF5133at 232.880 kb on + strand, within GFF5133at 232.916 kb on + strand, within GFF5133at 232.916 kb on + strand, within GFF5133at 232.991 kb on + strand, within GFF5133at 232.991 kb on + strand, within GFF5133at 232.992 kb on - strand, within GFF5133at 232.992 kb on - strand, within GFF5133at 233.124 kb on + strand, within GFF5133at 233.125 kb on - strand, within GFF5133at 233.125 kb on - strand, within GFF5133at 233.125 kb on - strand, within GFF5133at 233.156 kb on + strand, within GFF5133at 233.157 kb on - strand, within GFF5133at 233.285 kb on + strand, within GFF5133at 233.285 kb on + strand, within GFF5133at 233.286 kb on - strand, within GFF5133at 233.286 kb on - strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.321 kb on - strand, within GFF5133at 233.321 kb on - strand, within GFF5133at 233.321 kb on - strand, within GFF5133at 233.321 kb on - strand, within GFF5133at 233.321 kb on - strand, within GFF5133at 233.321 kb on - strand, within GFF5133at 233.321 kb on - strand, within GFF5133at 233.321 kb on - strand, within GFF5133at 233.324 kb on + strand, within GFF5133at 233.324 kb on + strand, within GFF5133at 233.324 kb on + strand, within GFF5133at 233.324 kb on + strand, within GFF5133at 233.325 kb on - strand, within GFF5133at 233.325 kb on - strand, within GFF5133

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
remove
230,551 + GFF5130 0.65 -1.2
230,551 + GFF5130 0.65 -0.6
230,551 + GFF5130 0.65 -1.0
230,551 + GFF5130 0.65 -1.2
230,552 - GFF5130 0.65 -1.8
230,552 - GFF5130 0.65 +0.0
230,669 - GFF5130 0.74 -0.2
230,669 - GFF5130 0.74 -0.5
230,669 - GFF5130 0.74 +0.3
231,040 - +0.9
231,055 + GFF5131 0.11 -0.3
231,144 + GFF5131 0.31 -0.8
231,144 + GFF5131 0.31 -0.2
231,144 + GFF5131 0.31 -1.0
231,144 + GFF5131 0.31 +1.2
231,144 + GFF5131 0.31 -0.6
231,144 + GFF5131 0.31 -0.3
231,144 + GFF5131 0.31 -0.1
231,144 + GFF5131 0.31 +0.7
231,144 + GFF5131 0.31 +0.7
231,145 - GFF5131 0.31 +0.7
231,246 + GFF5131 0.54 -0.6
231,246 + GFF5131 0.54 +0.7
231,246 + GFF5131 0.54 -0.4
231,246 + GFF5131 0.54 +0.2
231,246 + GFF5131 0.54 +1.2
231,247 - GFF5131 0.55 -0.1
231,247 - GFF5131 0.55 -0.1
231,247 - GFF5131 0.55 +0.3
231,247 - GFF5131 0.55 +0.5
231,247 - GFF5131 0.55 +1.3
231,247 - GFF5131 0.55 -1.6
231,247 - GFF5131 0.55 -0.5
231,247 - GFF5131 0.55 -0.1
231,247 - GFF5131 0.55 +0.1
231,333 + GFF5131 0.74 -0.6
231,333 + GFF5131 0.74 -0.8
231,333 + GFF5131 0.74 +0.4
231,333 + GFF5131 0.74 +0.3
231,333 + GFF5131 0.74 +0.1
231,333 + GFF5131 0.74 -0.8
231,333 + GFF5131 0.74 -0.7
231,334 - GFF5131 0.75 -0.2
231,334 - GFF5131 0.75 +0.0
231,334 - GFF5131 0.75 -0.4
231,334 - GFF5131 0.75 -1.3
231,334 - GFF5131 0.75 +0.6
231,334 - GFF5131 0.75 +1.7
231,334 - GFF5131 0.75 +0.0
231,334 - GFF5131 0.75 +0.9
231,334 - GFF5131 0.75 +0.1
231,334 - GFF5131 0.75 +2.3
231,334 - GFF5131 0.75 +0.2
231,334 - GFF5131 0.75 -0.1
231,334 - GFF5131 0.75 -0.4
231,334 - GFF5131 0.75 -0.5
231,363 + GFF5131 0.81 -0.9
231,364 - GFF5131 0.82 -1.6
231,364 - GFF5131 0.82 -0.5
231,460 + +0.1
231,460 + +0.4
231,460 + -0.4
231,461 - -1.8
231,461 - -0.6
231,461 - -0.2
231,461 - -0.8
231,461 - +2.0
231,461 - -1.8
231,461 - +0.5
231,461 - -1.7
231,530 - -0.3
231,530 - -1.2
231,542 + +0.2
231,542 + +1.7
231,543 - -0.7
231,543 - -0.3
231,565 + -0.1
231,565 + -1.1
231,566 - -2.2
231,566 - -0.4
231,566 - -0.2
231,712 + GFF5132 0.24 +1.4
231,712 + GFF5132 0.24 -0.3
231,712 + GFF5132 0.24 -0.5
231,712 + GFF5132 0.24 +0.2
231,713 - GFF5132 0.24 -0.3
231,713 - GFF5132 0.24 +0.0
231,901 + GFF5132 0.45 -0.6
231,944 + GFF5132 0.49 +0.2
231,944 + GFF5132 0.49 -0.6
231,944 + GFF5132 0.49 +0.3
231,945 - GFF5132 0.49 -0.3
231,945 - GFF5132 0.49 -0.1
231,994 + GFF5132 0.55 +2.7
231,994 + GFF5132 0.55 -0.7
231,994 + GFF5132 0.55 +0.2
231,994 + GFF5132 0.55 +0.0
231,994 + GFF5132 0.55 +0.7
231,994 + GFF5132 0.55 +0.4
231,995 - GFF5132 0.55 +0.1
232,118 + GFF5132 0.68 +1.1
232,129 + GFF5132 0.70 -0.8
232,129 + GFF5132 0.70 -0.6
232,129 + GFF5132 0.70 -0.0
232,129 + GFF5132 0.70 -1.0
232,130 - GFF5132 0.70 +0.3
232,130 - GFF5132 0.70 +0.9
232,233 + GFF5132 0.81 +0.7
232,233 + GFF5132 0.81 -0.2
232,233 + GFF5132 0.81 +0.2
232,233 + GFF5132 0.81 -0.5
232,233 + GFF5132 0.81 -0.8
232,234 - GFF5132 0.81 +0.5
232,234 - GFF5132 0.81 +3.1
232,239 - GFF5132 0.82 -0.2
232,373 + +0.2
232,373 + -0.6
232,373 + +0.0
232,374 - +0.0
232,374 - +0.2
232,417 + -0.1
232,417 + -0.2
232,417 + -0.7
232,418 - -0.3
232,420 - +1.4
232,420 - -0.1
232,420 - +0.1
232,532 + -0.3
232,533 - -0.6
232,533 - +0.6
232,533 - +0.3
232,535 + +0.6
232,535 + -0.9
232,535 + +1.2
232,535 + -0.4
232,535 + +1.7
232,535 + -0.3
232,536 - -1.5
232,536 - +0.2
232,560 + +0.5
232,618 + +0.6
232,618 + +0.9
232,618 + +1.4
232,619 - -0.0
232,649 + +0.6
232,649 + -0.2
232,649 + -1.8
232,650 - -0.2
232,724 + GFF5133 0.14 +0.4
232,724 + GFF5133 0.14 -0.4
232,724 + GFF5133 0.14 -0.4
232,724 + GFF5133 0.14 -0.6
232,724 + GFF5133 0.14 -0.0
232,724 + GFF5133 0.14 -0.4
232,724 + GFF5133 0.14 +2.5
232,724 + GFF5133 0.14 +0.7
232,724 + GFF5133 0.14 -0.7
232,724 + GFF5133 0.14 +0.5
232,725 - GFF5133 0.14 -0.4
232,725 - GFF5133 0.14 -0.7
232,725 - GFF5133 0.14 +0.9
232,725 - GFF5133 0.14 +0.9
232,725 - GFF5133 0.14 -1.5
232,725 - GFF5133 0.14 -0.3
232,836 - GFF5133 0.25 -0.7
232,836 - GFF5133 0.25 -1.3
232,836 - GFF5133 0.25 +0.3
232,839 + GFF5133 0.25 +0.0
232,839 + GFF5133 0.25 -0.8
232,839 + GFF5133 0.25 +0.6
232,839 + GFF5133 0.25 -0.7
232,839 + GFF5133 0.25 -0.8
232,839 + GFF5133 0.25 -0.2
232,839 + GFF5133 0.25 -0.6
232,839 + GFF5133 0.25 +0.1
232,840 - GFF5133 0.25 -0.4
232,840 - GFF5133 0.25 -0.0
232,840 - GFF5133 0.25 +0.2
232,840 - GFF5133 0.25 +0.7
232,840 - GFF5133 0.25 +0.5
232,840 - GFF5133 0.25 +0.4
232,880 + GFF5133 0.29 +0.2
232,916 + GFF5133 0.33 -0.6
232,916 + GFF5133 0.33 -0.2
232,991 + GFF5133 0.40 -0.3
232,991 + GFF5133 0.40 +0.2
232,992 - GFF5133 0.40 -0.0
232,992 - GFF5133 0.40 -0.4
233,124 + GFF5133 0.52 +0.2
233,125 - GFF5133 0.52 +0.0
233,125 - GFF5133 0.52 +1.7
233,125 - GFF5133 0.52 +1.3
233,156 + GFF5133 0.55 +0.3
233,157 - GFF5133 0.55 -0.1
233,285 + GFF5133 0.68 -1.6
233,285 + GFF5133 0.68 +0.3
233,286 - GFF5133 0.68 -1.0
233,286 - GFF5133 0.68 -0.0
233,320 + GFF5133 0.71 -1.0
233,320 + GFF5133 0.71 -0.3
233,320 + GFF5133 0.71 -0.5
233,320 + GFF5133 0.71 -0.8
233,320 + GFF5133 0.71 +0.1
233,320 + GFF5133 0.71 -0.4
233,320 + GFF5133 0.71 -0.2
233,320 + GFF5133 0.71 +0.1
233,320 + GFF5133 0.71 -0.5
233,320 + GFF5133 0.71 +0.5
233,320 + GFF5133 0.71 +0.2
233,320 + GFF5133 0.71 +1.1
233,321 - GFF5133 0.71 +1.5
233,321 - GFF5133 0.71 -0.2
233,321 - GFF5133 0.71 -0.4
233,321 - GFF5133 0.71 -1.5
233,321 - GFF5133 0.71 -0.2
233,321 - GFF5133 0.71 -0.1
233,321 - GFF5133 0.71 -0.3
233,321 - GFF5133 0.71 +1.4
233,324 + GFF5133 0.71 +1.0
233,324 + GFF5133 0.71 -0.0
233,324 + GFF5133 0.71 +0.3
233,324 + GFF5133 0.71 -0.2
233,325 - GFF5133 0.71 -0.1
233,325 - GFF5133 0.71 -1.1

Or see this region's nucleotide sequence