Strain Fitness in Variovorax sp. SCN45 around GFF5107

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5106 and GFF5107 are separated by 94 nucleotidesGFF5107 and GFF5108 overlap by 47 nucleotidesGFF5108 and GFF5109 overlap by 4 nucleotides GFF5106 - Permease of the drug/metabolite transporter (DMT) superfamily, at 207,579 to 208,523 GFF5106 GFF5107 - Transcriptional regulator, LysR family, at 208,618 to 209,568 GFF5107 GFF5108 - FIG00348319: hypothetical protein, at 209,522 to 210,280 GFF5108 GFF5109 - Alanine racemase (EC 5.1.1.1), at 210,277 to 211,380 GFF5109 Position (kb) 208 209 210Strain fitness (log2 ratio) -1 0 1at 207.679 kb on + strand, within GFF5106at 207.679 kb on + strand, within GFF5106at 207.679 kb on + strand, within GFF5106at 207.680 kb on - strand, within GFF5106at 207.680 kb on - strand, within GFF5106at 207.805 kb on + strand, within GFF5106at 207.805 kb on + strand, within GFF5106at 207.806 kb on - strand, within GFF5106at 207.806 kb on - strand, within GFF5106at 207.806 kb on - strand, within GFF5106at 207.806 kb on - strand, within GFF5106at 207.806 kb on - strand, within GFF5106at 208.402 kb on + strand, within GFF5106at 208.402 kb on + strand, within GFF5106at 208.402 kb on + strand, within GFF5106at 208.403 kb on - strand, within GFF5106at 208.403 kb on - strand, within GFF5106at 208.403 kb on - strand, within GFF5106at 208.523 kb on + strandat 208.524 kb on - strandat 208.524 kb on - strandat 208.524 kb on - strandat 208.524 kb on - strandat 208.524 kb on - strandat 208.991 kb on - strand, within GFF5107at 209.150 kb on - strand, within GFF5107at 209.150 kb on - strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.291 kb on - strand, within GFF5107at 209.291 kb on - strand, within GFF5107at 209.291 kb on - strand, within GFF5107at 209.291 kb on - strand, within GFF5107at 209.291 kb on - strand, within GFF5107at 209.291 kb on - strand, within GFF5107at 209.405 kb on + strand, within GFF5107at 209.434 kb on + strand, within GFF5107at 209.434 kb on + strand, within GFF5107at 209.434 kb on + strand, within GFF5107at 209.435 kb on - strand, within GFF5107at 209.435 kb on - strand, within GFF5107at 209.435 kb on - strand, within GFF5107at 209.435 kb on - strand, within GFF5107at 209.459 kb on - strand, within GFF5107at 209.459 kb on - strand, within GFF5107at 209.709 kb on + strand, within GFF5108at 209.709 kb on + strand, within GFF5108at 209.709 kb on + strand, within GFF5108at 209.709 kb on + strand, within GFF5108at 209.709 kb on + strand, within GFF5108at 209.709 kb on + strand, within GFF5108at 209.709 kb on + strand, within GFF5108at 209.709 kb on + strand, within GFF5108at 209.710 kb on - strand, within GFF5108at 209.710 kb on - strand, within GFF5108at 209.710 kb on - strand, within GFF5108at 209.710 kb on - strand, within GFF5108at 209.710 kb on - strand, within GFF5108at 209.710 kb on - strand, within GFF5108at 209.710 kb on - strand, within GFF5108at 209.760 kb on + strand, within GFF5108at 209.761 kb on - strand, within GFF5108at 209.920 kb on + strand, within GFF5108at 209.920 kb on + strand, within GFF5108at 209.920 kb on + strand, within GFF5108at 210.003 kb on + strand, within GFF5108at 210.063 kb on + strand, within GFF5108at 210.207 kb on + strandat 210.207 kb on + strandat 210.208 kb on - strandat 210.208 kb on - strandat 210.208 kb on - strandat 210.208 kb on - strandat 210.208 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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207,679 + GFF5106 0.11 +1.4
207,679 + GFF5106 0.11 -0.9
207,679 + GFF5106 0.11 -0.0
207,680 - GFF5106 0.11 -0.4
207,680 - GFF5106 0.11 +0.2
207,805 + GFF5106 0.24 +0.7
207,805 + GFF5106 0.24 -0.1
207,806 - GFF5106 0.24 +0.5
207,806 - GFF5106 0.24 +1.3
207,806 - GFF5106 0.24 +0.2
207,806 - GFF5106 0.24 +0.3
207,806 - GFF5106 0.24 -0.3
208,402 + GFF5106 0.87 -0.4
208,402 + GFF5106 0.87 -0.2
208,402 + GFF5106 0.87 -0.3
208,403 - GFF5106 0.87 -1.3
208,403 - GFF5106 0.87 -0.6
208,403 - GFF5106 0.87 -1.2
208,523 + +0.9
208,524 - +0.2
208,524 - +0.6
208,524 - -0.1
208,524 - -0.3
208,524 - -0.4
208,991 - GFF5107 0.39 +0.6
209,150 - GFF5107 0.56 -0.4
209,150 - GFF5107 0.56 +0.6
209,290 + GFF5107 0.71 +1.3
209,290 + GFF5107 0.71 -0.9
209,290 + GFF5107 0.71 -0.1
209,290 + GFF5107 0.71 -1.0
209,290 + GFF5107 0.71 -0.4
209,290 + GFF5107 0.71 +0.7
209,290 + GFF5107 0.71 +0.7
209,290 + GFF5107 0.71 -1.5
209,290 + GFF5107 0.71 -0.7
209,290 + GFF5107 0.71 -0.3
209,290 + GFF5107 0.71 +0.7
209,290 + GFF5107 0.71 +0.3
209,290 + GFF5107 0.71 +0.3
209,291 - GFF5107 0.71 -0.3
209,291 - GFF5107 0.71 +0.3
209,291 - GFF5107 0.71 +0.7
209,291 - GFF5107 0.71 +1.7
209,291 - GFF5107 0.71 +0.4
209,291 - GFF5107 0.71 -0.1
209,405 + GFF5107 0.83 +0.3
209,434 + GFF5107 0.86 +1.3
209,434 + GFF5107 0.86 -0.9
209,434 + GFF5107 0.86 +0.3
209,435 - GFF5107 0.86 -1.0
209,435 - GFF5107 0.86 -0.4
209,435 - GFF5107 0.86 +0.3
209,435 - GFF5107 0.86 -0.3
209,459 - GFF5107 0.88 -1.1
209,459 - GFF5107 0.88 +0.3
209,709 + GFF5108 0.25 +0.7
209,709 + GFF5108 0.25 -0.2
209,709 + GFF5108 0.25 -0.1
209,709 + GFF5108 0.25 -0.2
209,709 + GFF5108 0.25 +0.2
209,709 + GFF5108 0.25 -0.3
209,709 + GFF5108 0.25 -0.3
209,709 + GFF5108 0.25 -1.0
209,710 - GFF5108 0.25 -1.0
209,710 - GFF5108 0.25 -0.8
209,710 - GFF5108 0.25 -0.4
209,710 - GFF5108 0.25 -0.4
209,710 - GFF5108 0.25 -0.1
209,710 - GFF5108 0.25 +0.7
209,710 - GFF5108 0.25 -0.4
209,760 + GFF5108 0.31 -0.1
209,761 - GFF5108 0.31 -0.1
209,920 + GFF5108 0.52 +1.2
209,920 + GFF5108 0.52 -0.3
209,920 + GFF5108 0.52 -0.5
210,003 + GFF5108 0.63 -0.2
210,063 + GFF5108 0.71 -0.6
210,207 + -0.4
210,207 + +0.4
210,208 - +0.1
210,208 - -0.3
210,208 - -0.7
210,208 - +1.1
210,208 - -0.5

Or see this region's nucleotide sequence