Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5050 and GFF5051 are separated by 145 nucleotides GFF5051 and GFF5052 are separated by 152 nucleotides
GFF5050 - Transcriptional regulator, IclR family, at 150,782 to 151,642
GFF5050
GFF5051 - MBL-fold metallohydrolase SPO0683, at 151,788 to 152,747
GFF5051
GFF5052 - FAD-dependent oxidoreductase SPO0682, at 152,900 to 154,540
GFF5052
Position (kb) 151
152
153 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 151.182 kb on + strand, within GFF5050 at 151.182 kb on + strand, within GFF5050 at 151.182 kb on + strand, within GFF5050 at 151.182 kb on + strand, within GFF5050 at 151.182 kb on + strand, within GFF5050 at 151.182 kb on + strand, within GFF5050 at 151.182 kb on + strand, within GFF5050 at 151.182 kb on + strand, within GFF5050 at 151.182 kb on + strand, within GFF5050 at 151.183 kb on - strand, within GFF5050 at 151.183 kb on - strand, within GFF5050 at 151.183 kb on - strand, within GFF5050 at 151.183 kb on - strand, within GFF5050 at 151.183 kb on - strand, within GFF5050 at 151.183 kb on - strand, within GFF5050 at 151.324 kb on + strand, within GFF5050 at 151.324 kb on + strand, within GFF5050 at 151.324 kb on + strand, within GFF5050 at 151.324 kb on + strand, within GFF5050 at 151.434 kb on + strand, within GFF5050 at 151.434 kb on + strand, within GFF5050 at 151.434 kb on + strand, within GFF5050 at 151.434 kb on + strand, within GFF5050 at 151.435 kb on - strand, within GFF5050 at 151.435 kb on - strand, within GFF5050 at 151.435 kb on - strand, within GFF5050 at 151.435 kb on - strand, within GFF5050 at 151.435 kb on - strand, within GFF5050 at 151.491 kb on + strand, within GFF5050 at 151.491 kb on + strand, within GFF5050 at 151.491 kb on + strand, within GFF5050 at 151.491 kb on + strand, within GFF5050 at 151.491 kb on + strand, within GFF5050 at 151.491 kb on + strand, within GFF5050 at 151.491 kb on + strand, within GFF5050 at 151.491 kb on + strand, within GFF5050 at 151.491 kb on + strand, within GFF5050 at 151.492 kb on - strand, within GFF5050 at 151.492 kb on - strand, within GFF5050 at 151.492 kb on - strand, within GFF5050 at 151.492 kb on - strand, within GFF5050 at 151.492 kb on - strand, within GFF5050 at 151.492 kb on - strand, within GFF5050 at 151.492 kb on - strand, within GFF5050 at 151.492 kb on - strand, within GFF5050 at 151.492 kb on - strand, within GFF5050 at 151.492 kb on - strand, within GFF5050 at 151.492 kb on - strand, within GFF5050 at 151.492 kb on - strand, within GFF5050 at 151.685 kb on + strand at 151.685 kb on + strand at 151.685 kb on + strand at 151.685 kb on + strand at 151.686 kb on - strand at 151.686 kb on - strand at 151.692 kb on + strand at 151.708 kb on + strand at 151.708 kb on + strand at 151.708 kb on + strand at 151.708 kb on + strand at 151.709 kb on - strand at 151.875 kb on + strand at 151.875 kb on + strand at 151.875 kb on + strand at 151.875 kb on + strand at 151.875 kb on + strand at 151.875 kb on + strand at 151.875 kb on + strand at 151.876 kb on - strand at 152.013 kb on + strand, within GFF5051 at 152.013 kb on + strand, within GFF5051 at 152.013 kb on + strand, within GFF5051 at 152.013 kb on + strand, within GFF5051 at 152.013 kb on + strand, within GFF5051 at 152.013 kb on + strand, within GFF5051 at 152.013 kb on + strand, within GFF5051 at 152.013 kb on + strand, within GFF5051 at 152.013 kb on + strand, within GFF5051 at 152.013 kb on + strand, within GFF5051 at 152.014 kb on - strand, within GFF5051 at 152.014 kb on - strand, within GFF5051 at 152.014 kb on - strand, within GFF5051 at 152.014 kb on - strand, within GFF5051 at 152.014 kb on - strand, within GFF5051 at 152.014 kb on - strand, within GFF5051 at 152.014 kb on - strand, within GFF5051 at 152.014 kb on - strand, within GFF5051 at 152.031 kb on + strand, within GFF5051 at 152.031 kb on + strand, within GFF5051 at 152.031 kb on + strand, within GFF5051 at 152.032 kb on - strand, within GFF5051 at 152.032 kb on - strand, within GFF5051 at 152.032 kb on - strand, within GFF5051 at 152.368 kb on - strand, within GFF5051 at 152.382 kb on + strand, within GFF5051 at 152.382 kb on + strand, within GFF5051 at 152.383 kb on - strand, within GFF5051 at 152.383 kb on - strand, within GFF5051 at 152.526 kb on + strand, within GFF5051 at 152.526 kb on + strand, within GFF5051 at 152.526 kb on + strand, within GFF5051 at 152.526 kb on + strand, within GFF5051 at 152.526 kb on + strand, within GFF5051 at 152.526 kb on + strand, within GFF5051 at 152.526 kb on + strand, within GFF5051 at 152.526 kb on + strand, within GFF5051 at 152.526 kb on + strand, within GFF5051 at 152.526 kb on + strand, within GFF5051 at 152.527 kb on - strand, within GFF5051 at 152.527 kb on - strand, within GFF5051 at 152.527 kb on - strand, within GFF5051 at 152.527 kb on - strand, within GFF5051 at 152.527 kb on - strand, within GFF5051 at 152.527 kb on - strand, within GFF5051 at 152.577 kb on + strand, within GFF5051 at 152.578 kb on - strand, within GFF5051 at 152.578 kb on - strand, within GFF5051 at 152.589 kb on + strand, within GFF5051 at 152.589 kb on + strand, within GFF5051 at 152.589 kb on + strand, within GFF5051 at 152.589 kb on + strand, within GFF5051 at 152.589 kb on + strand, within GFF5051 at 152.589 kb on + strand, within GFF5051 at 152.590 kb on - strand, within GFF5051 at 152.590 kb on - strand, within GFF5051 at 152.590 kb on - strand, within GFF5051 at 152.610 kb on + strand, within GFF5051 at 152.610 kb on + strand, within GFF5051 at 152.610 kb on + strand, within GFF5051 at 152.611 kb on - strand, within GFF5051 at 152.611 kb on - strand, within GFF5051 at 152.611 kb on - strand, within GFF5051 at 152.611 kb on - strand, within GFF5051 at 152.611 kb on - strand, within GFF5051 at 152.665 kb on - strand at 152.753 kb on - strand at 152.897 kb on + strand at 152.897 kb on + strand at 152.897 kb on + strand at 152.897 kb on + strand at 152.897 kb on + strand at 152.897 kb on + strand at 152.897 kb on + strand at 152.897 kb on + strand at 152.897 kb on + strand at 152.897 kb on + strand at 152.897 kb on + strand at 152.897 kb on + strand at 152.898 kb on - strand at 152.898 kb on - strand at 152.898 kb on - strand at 152.898 kb on - strand at 152.898 kb on - strand at 152.898 kb on - strand at 152.898 kb on - strand at 152.898 kb on - strand at 152.898 kb on - strand at 152.898 kb on - strand at 152.909 kb on + strand at 152.909 kb on + strand at 152.909 kb on + strand at 152.910 kb on - strand at 152.910 kb on - strand at 152.930 kb on + strand at 152.930 kb on + strand at 152.930 kb on + strand at 152.930 kb on + strand at 152.931 kb on - strand at 152.931 kb on - strand at 152.931 kb on - strand at 152.931 kb on - strand at 152.931 kb on - strand at 153.212 kb on + strand, within GFF5052 at 153.212 kb on + strand, within GFF5052 at 153.213 kb on - strand, within GFF5052 at 153.213 kb on - strand, within GFF5052 at 153.275 kb on + strand, within GFF5052 at 153.275 kb on + strand, within GFF5052 at 153.275 kb on + strand, within GFF5052 at 153.275 kb on + strand, within GFF5052 at 153.275 kb on + strand, within GFF5052 at 153.275 kb on + strand, within GFF5052 at 153.275 kb on + strand, within GFF5052 at 153.275 kb on + strand, within GFF5052 at 153.275 kb on + strand, within GFF5052 at 153.275 kb on + strand, within GFF5052 at 153.276 kb on - strand, within GFF5052 at 153.276 kb on - strand, within GFF5052 at 153.276 kb on - strand, within GFF5052 at 153.276 kb on - strand, within GFF5052 at 153.276 kb on - strand, within GFF5052 at 153.276 kb on - strand, within GFF5052 at 153.276 kb on - strand, within GFF5052 at 153.276 kb on - strand, within GFF5052 at 153.276 kb on - strand, within GFF5052 at 153.276 kb on - strand, within GFF5052 at 153.278 kb on + strand, within GFF5052 at 153.278 kb on + strand, within GFF5052 at 153.278 kb on + strand, within GFF5052 at 153.278 kb on + strand, within GFF5052 at 153.278 kb on + strand, within GFF5052 at 153.278 kb on + strand, within GFF5052 at 153.278 kb on + strand, within GFF5052 at 153.278 kb on + strand, within GFF5052 at 153.278 kb on + strand, within GFF5052 at 153.278 kb on + strand, within GFF5052 at 153.278 kb on + strand, within GFF5052 at 153.279 kb on - strand, within GFF5052 at 153.279 kb on - strand, within GFF5052 at 153.279 kb on - strand, within GFF5052 at 153.279 kb on - strand, within GFF5052 at 153.279 kb on - strand, within GFF5052 at 153.279 kb on - strand, within GFF5052 at 153.279 kb on - strand, within GFF5052 at 153.279 kb on - strand, within GFF5052 at 153.279 kb on - strand, within GFF5052 at 153.279 kb on - strand, within GFF5052 at 153.290 kb on + strand, within GFF5052 at 153.291 kb on - strand, within GFF5052 at 153.291 kb on - strand, within GFF5052 at 153.291 kb on - strand, within GFF5052 at 153.291 kb on - strand, within GFF5052 at 153.291 kb on - strand, within GFF5052 at 153.291 kb on - strand, within GFF5052 at 153.428 kb on + strand, within GFF5052
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 151,182 + GFF5050 0.46 -0.4 151,182 + GFF5050 0.46 -1.2 151,182 + GFF5050 0.46 -0.3 151,182 + GFF5050 0.46 +0.7 151,182 + GFF5050 0.46 -0.9 151,182 + GFF5050 0.46 -0.9 151,182 + GFF5050 0.46 -2.1 151,182 + GFF5050 0.46 -0.5 151,182 + GFF5050 0.46 -1.0 151,183 - GFF5050 0.47 -0.1 151,183 - GFF5050 0.47 +1.0 151,183 - GFF5050 0.47 +1.0 151,183 - GFF5050 0.47 -0.3 151,183 - GFF5050 0.47 -0.5 151,183 - GFF5050 0.47 -0.2 151,324 + GFF5050 0.63 +0.3 151,324 + GFF5050 0.63 -0.6 151,324 + GFF5050 0.63 +0.4 151,324 + GFF5050 0.63 -0.4 151,434 + GFF5050 0.76 +1.7 151,434 + GFF5050 0.76 +1.0 151,434 + GFF5050 0.76 -1.1 151,434 + GFF5050 0.76 +1.7 151,435 - GFF5050 0.76 -0.0 151,435 - GFF5050 0.76 -0.5 151,435 - GFF5050 0.76 -0.1 151,435 - GFF5050 0.76 -0.7 151,435 - GFF5050 0.76 -0.8 151,491 + GFF5050 0.82 -1.6 151,491 + GFF5050 0.82 -0.4 151,491 + GFF5050 0.82 -1.0 151,491 + GFF5050 0.82 -0.5 151,491 + GFF5050 0.82 +0.5 151,491 + GFF5050 0.82 -0.2 151,491 + GFF5050 0.82 -0.7 151,491 + GFF5050 0.82 +0.7 151,491 + GFF5050 0.82 -0.7 151,492 - GFF5050 0.82 -0.3 151,492 - GFF5050 0.82 -0.5 151,492 - GFF5050 0.82 -0.1 151,492 - GFF5050 0.82 -1.7 151,492 - GFF5050 0.82 +0.1 151,492 - GFF5050 0.82 +0.5 151,492 - GFF5050 0.82 +0.7 151,492 - GFF5050 0.82 -1.0 151,492 - GFF5050 0.82 +1.1 151,492 - GFF5050 0.82 -0.6 151,492 - GFF5050 0.82 -0.4 151,492 - GFF5050 0.82 +0.2 151,685 + -0.2 151,685 + +0.5 151,685 + -0.3 151,685 + -0.4 151,686 - -1.2 151,686 - +0.7 151,692 + -0.3 151,708 + -0.3 151,708 + +0.4 151,708 + -0.4 151,708 + -0.5 151,709 - -0.4 151,875 + +0.7 151,875 + -0.8 151,875 + +0.3 151,875 + +0.4 151,875 + -0.6 151,875 + +2.3 151,875 + -1.6 151,876 - -0.0 152,013 + GFF5051 0.23 -1.5 152,013 + GFF5051 0.23 +0.3 152,013 + GFF5051 0.23 -2.7 152,013 + GFF5051 0.23 +1.2 152,013 + GFF5051 0.23 -0.8 152,013 + GFF5051 0.23 +0.7 152,013 + GFF5051 0.23 -1.3 152,013 + GFF5051 0.23 +0.2 152,013 + GFF5051 0.23 +0.7 152,013 + GFF5051 0.23 -0.0 152,014 - GFF5051 0.24 +1.1 152,014 - GFF5051 0.24 +0.7 152,014 - GFF5051 0.24 -0.9 152,014 - GFF5051 0.24 -0.9 152,014 - GFF5051 0.24 +0.3 152,014 - GFF5051 0.24 +0.3 152,014 - GFF5051 0.24 -0.6 152,014 - GFF5051 0.24 +0.7 152,031 + GFF5051 0.25 -0.1 152,031 + GFF5051 0.25 +0.1 152,031 + GFF5051 0.25 -0.3 152,032 - GFF5051 0.25 -0.2 152,032 - GFF5051 0.25 -0.5 152,032 - GFF5051 0.25 -0.6 152,368 - GFF5051 0.60 +0.6 152,382 + GFF5051 0.62 -0.4 152,382 + GFF5051 0.62 +0.0 152,383 - GFF5051 0.62 -0.3 152,383 - GFF5051 0.62 +0.7 152,526 + GFF5051 0.77 +1.4 152,526 + GFF5051 0.77 -0.2 152,526 + GFF5051 0.77 -0.1 152,526 + GFF5051 0.77 +0.1 152,526 + GFF5051 0.77 +0.3 152,526 + GFF5051 0.77 -0.3 152,526 + GFF5051 0.77 -0.7 152,526 + GFF5051 0.77 +0.5 152,526 + GFF5051 0.77 +0.3 152,526 + GFF5051 0.77 +0.2 152,527 - GFF5051 0.77 +0.0 152,527 - GFF5051 0.77 +0.0 152,527 - GFF5051 0.77 -0.3 152,527 - GFF5051 0.77 +0.0 152,527 - GFF5051 0.77 -0.0 152,527 - GFF5051 0.77 +0.0 152,577 + GFF5051 0.82 -1.0 152,578 - GFF5051 0.82 +1.0 152,578 - GFF5051 0.82 +1.2 152,589 + GFF5051 0.83 -0.0 152,589 + GFF5051 0.83 +0.2 152,589 + GFF5051 0.83 -0.8 152,589 + GFF5051 0.83 +1.5 152,589 + GFF5051 0.83 +0.3 152,589 + GFF5051 0.83 +1.7 152,590 - GFF5051 0.84 +0.1 152,590 - GFF5051 0.84 +0.5 152,590 - GFF5051 0.84 -1.1 152,610 + GFF5051 0.86 +0.1 152,610 + GFF5051 0.86 +0.6 152,610 + GFF5051 0.86 -0.2 152,611 - GFF5051 0.86 +2.3 152,611 - GFF5051 0.86 -0.2 152,611 - GFF5051 0.86 -0.3 152,611 - GFF5051 0.86 -1.1 152,611 - GFF5051 0.86 +0.2 152,665 - -0.2 152,753 - -2.1 152,897 + -0.1 152,897 + +0.2 152,897 + -0.2 152,897 + -0.5 152,897 + +1.3 152,897 + +0.3 152,897 + -0.5 152,897 + +0.4 152,897 + -1.5 152,897 + -1.2 152,897 + -0.4 152,897 + +0.0 152,898 - -0.0 152,898 - -1.4 152,898 - -0.4 152,898 - -0.8 152,898 - -0.3 152,898 - +0.2 152,898 - -0.0 152,898 - +0.1 152,898 - -0.5 152,898 - -0.4 152,909 + -1.3 152,909 + +0.6 152,909 + +0.4 152,910 - -0.8 152,910 - -0.6 152,930 + +0.2 152,930 + -0.2 152,930 + +1.7 152,930 + +0.4 152,931 - -1.1 152,931 - -1.3 152,931 - +1.1 152,931 - -0.8 152,931 - -0.4 153,212 + GFF5052 0.19 -0.6 153,212 + GFF5052 0.19 +0.0 153,213 - GFF5052 0.19 -0.4 153,213 - GFF5052 0.19 +0.0 153,275 + GFF5052 0.23 +0.3 153,275 + GFF5052 0.23 -1.3 153,275 + GFF5052 0.23 -1.7 153,275 + GFF5052 0.23 -1.2 153,275 + GFF5052 0.23 +0.6 153,275 + GFF5052 0.23 -0.2 153,275 + GFF5052 0.23 +0.6 153,275 + GFF5052 0.23 -0.3 153,275 + GFF5052 0.23 -0.2 153,275 + GFF5052 0.23 -0.4 153,276 - GFF5052 0.23 +1.0 153,276 - GFF5052 0.23 +0.1 153,276 - GFF5052 0.23 -1.6 153,276 - GFF5052 0.23 +0.5 153,276 - GFF5052 0.23 -0.6 153,276 - GFF5052 0.23 -0.1 153,276 - GFF5052 0.23 +0.7 153,276 - GFF5052 0.23 +0.4 153,276 - GFF5052 0.23 +1.2 153,276 - GFF5052 0.23 -0.0 153,278 + GFF5052 0.23 +1.3 153,278 + GFF5052 0.23 +0.2 153,278 + GFF5052 0.23 -0.2 153,278 + GFF5052 0.23 +0.4 153,278 + GFF5052 0.23 +3.3 153,278 + GFF5052 0.23 -0.1 153,278 + GFF5052 0.23 -0.2 153,278 + GFF5052 0.23 -2.1 153,278 + GFF5052 0.23 +0.3 153,278 + GFF5052 0.23 -0.3 153,278 + GFF5052 0.23 +1.7 153,279 - GFF5052 0.23 +0.4 153,279 - GFF5052 0.23 -0.2 153,279 - GFF5052 0.23 -0.6 153,279 - GFF5052 0.23 +0.3 153,279 - GFF5052 0.23 +0.2 153,279 - GFF5052 0.23 -1.4 153,279 - GFF5052 0.23 -0.4 153,279 - GFF5052 0.23 +0.4 153,279 - GFF5052 0.23 +0.3 153,279 - GFF5052 0.23 -0.9 153,290 + GFF5052 0.24 +1.2 153,291 - GFF5052 0.24 -0.8 153,291 - GFF5052 0.24 +0.1 153,291 - GFF5052 0.24 -0.1 153,291 - GFF5052 0.24 -0.1 153,291 - GFF5052 0.24 -0.0 153,291 - GFF5052 0.24 -2.5 153,428 + GFF5052 0.32 +0.3
Or see this region's nucleotide sequence