Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF488 and GFF489 are separated by 106 nucleotides GFF489 and GFF490 are separated by 115 nucleotides GFF490 and GFF491 are separated by 24 nucleotides GFF491 and GFF492 are separated by 128 nucleotides
GFF488 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 528,829 to 530,094
GFF488
GFF489 - ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92), at 530,201 to 530,809
GFF489
GFF490 - Cell division trigger factor (EC 5.2.1.8), at 530,925 to 532,241
GFF490
GFF491 - no description, at 532,266 to 532,382
GFF491
GFF492 - no description, at 532,511 to 533,476
GFF492
Position (kb) 530
531
532
533 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 530.054 kb on + strand at 530.054 kb on + strand at 530.054 kb on + strand at 530.054 kb on + strand at 530.054 kb on + strand at 530.054 kb on + strand at 530.054 kb on + strand at 530.054 kb on + strand at 530.054 kb on + strand at 530.054 kb on + strand at 530.055 kb on - strand at 530.055 kb on - strand at 530.055 kb on - strand at 530.055 kb on - strand at 530.117 kb on + strand at 530.129 kb on + strand at 530.129 kb on + strand at 530.129 kb on + strand at 530.129 kb on + strand at 530.129 kb on + strand at 530.129 kb on + strand at 530.129 kb on + strand at 530.129 kb on + strand at 530.129 kb on + strand at 530.129 kb on + strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.133 kb on + strand at 530.133 kb on + strand at 530.133 kb on + strand at 530.134 kb on - strand at 530.134 kb on - strand at 530.134 kb on - strand at 530.238 kb on + strand at 530.269 kb on - strand, within GFF489 at 530.553 kb on + strand, within GFF489 at 530.553 kb on + strand, within GFF489 at 530.553 kb on + strand, within GFF489 at 530.553 kb on + strand, within GFF489 at 530.554 kb on - strand, within GFF489 at 530.554 kb on - strand, within GFF489 at 530.598 kb on + strand, within GFF489 at 530.599 kb on - strand, within GFF489 at 530.599 kb on - strand, within GFF489 at 530.599 kb on - strand, within GFF489 at 530.724 kb on + strand, within GFF489 at 530.724 kb on + strand, within GFF489 at 530.725 kb on - strand, within GFF489 at 530.725 kb on - strand, within GFF489 at 530.725 kb on - strand, within GFF489 at 530.733 kb on + strand, within GFF489 at 530.734 kb on - strand, within GFF489 at 530.734 kb on - strand, within GFF489 at 530.734 kb on - strand, within GFF489 at 530.813 kb on + strand at 530.813 kb on + strand at 530.813 kb on + strand at 530.813 kb on + strand at 530.813 kb on + strand at 530.813 kb on + strand at 530.813 kb on + strand at 530.813 kb on + strand at 530.813 kb on + strand at 530.813 kb on + strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.855 kb on + strand at 530.855 kb on + strand at 530.855 kb on + strand at 530.855 kb on + strand at 530.855 kb on + strand at 530.856 kb on - strand at 530.856 kb on - strand at 530.856 kb on - strand at 530.906 kb on + strand at 531.064 kb on + strand, within GFF490 at 531.065 kb on - strand, within GFF490 at 531.065 kb on - strand, within GFF490 at 531.065 kb on - strand, within GFF490 at 531.065 kb on - strand, within GFF490 at 531.095 kb on - strand, within GFF490 at 531.095 kb on - strand, within GFF490 at 531.574 kb on + strand, within GFF490 at 531.574 kb on + strand, within GFF490 at 531.575 kb on - strand, within GFF490 at 531.575 kb on - strand, within GFF490 at 531.575 kb on - strand, within GFF490 at 531.794 kb on + strand, within GFF490 at 531.794 kb on + strand, within GFF490 at 531.794 kb on + strand, within GFF490 at 531.794 kb on + strand, within GFF490 at 531.794 kb on + strand, within GFF490 at 531.794 kb on + strand, within GFF490 at 531.795 kb on - strand, within GFF490 at 531.795 kb on - strand, within GFF490 at 531.795 kb on - strand, within GFF490 at 531.795 kb on - strand, within GFF490 at 532.051 kb on + strand, within GFF490 at 532.051 kb on + strand, within GFF490 at 532.051 kb on + strand, within GFF490 at 532.052 kb on - strand, within GFF490 at 532.052 kb on - strand, within GFF490 at 532.052 kb on - strand, within GFF490 at 532.064 kb on - strand, within GFF490 at 532.069 kb on + strand, within GFF490 at 532.069 kb on + strand, within GFF490 at 532.069 kb on + strand, within GFF490 at 532.070 kb on - strand, within GFF490 at 532.070 kb on - strand, within GFF490 at 532.070 kb on - strand, within GFF490 at 532.070 kb on - strand, within GFF490 at 532.070 kb on - strand, within GFF490 at 532.290 kb on + strand, within GFF491 at 532.296 kb on + strand, within GFF491 at 532.297 kb on - strand, within GFF491 at 532.297 kb on - strand, within GFF491 at 532.297 kb on - strand, within GFF491 at 532.297 kb on - strand, within GFF491 at 532.311 kb on + strand, within GFF491 at 532.311 kb on + strand, within GFF491 at 532.311 kb on + strand, within GFF491 at 532.312 kb on - strand, within GFF491 at 532.312 kb on - strand, within GFF491 at 532.312 kb on - strand, within GFF491 at 532.312 kb on - strand, within GFF491 at 532.330 kb on + strand, within GFF491 at 532.331 kb on - strand, within GFF491 at 532.331 kb on - strand, within GFF491 at 532.380 kb on + strand at 532.380 kb on + strand at 532.381 kb on - strand at 532.381 kb on - strand at 532.381 kb on - strand at 532.449 kb on - strand at 532.449 kb on - strand at 532.459 kb on + strand at 532.459 kb on + strand at 532.459 kb on + strand at 532.460 kb on - strand at 532.460 kb on - strand at 532.460 kb on - strand at 532.631 kb on + strand, within GFF492 at 532.631 kb on + strand, within GFF492 at 532.631 kb on + strand, within GFF492 at 532.631 kb on + strand, within GFF492 at 532.631 kb on + strand, within GFF492 at 532.631 kb on + strand, within GFF492 at 532.632 kb on - strand, within GFF492 at 532.632 kb on - strand, within GFF492 at 532.632 kb on - strand, within GFF492 at 532.632 kb on - strand, within GFF492 at 532.632 kb on - strand, within GFF492 at 533.105 kb on + strand, within GFF492 at 533.105 kb on + strand, within GFF492 at 533.105 kb on + strand, within GFF492 at 533.105 kb on + strand, within GFF492 at 533.105 kb on + strand, within GFF492 at 533.105 kb on + strand, within GFF492 at 533.105 kb on + strand, within GFF492 at 533.106 kb on - strand, within GFF492 at 533.106 kb on - strand, within GFF492 at 533.106 kb on - strand, within GFF492 at 533.106 kb on - strand, within GFF492 at 533.106 kb on - strand, within GFF492 at 533.106 kb on - strand, within GFF492 at 533.106 kb on - strand, within GFF492 at 533.106 kb on - strand, within GFF492 at 533.106 kb on - strand, within GFF492 at 533.106 kb on - strand, within GFF492 at 533.106 kb on - strand, within GFF492
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 530,054 + +0.0 530,054 + -0.8 530,054 + -1.7 530,054 + -0.9 530,054 + -0.9 530,054 + -0.2 530,054 + -1.5 530,054 + -1.0 530,054 + -0.6 530,054 + +1.4 530,055 - +1.6 530,055 - -0.5 530,055 - -1.3 530,055 - +0.1 530,117 + +0.5 530,129 + -0.4 530,129 + -0.4 530,129 + -0.2 530,129 + +0.5 530,129 + -0.8 530,129 + -0.6 530,129 + -0.2 530,129 + +0.2 530,129 + -0.5 530,129 + +0.9 530,130 - -0.5 530,130 - -0.5 530,130 - -0.9 530,130 - -1.1 530,130 - -0.5 530,130 - -1.1 530,130 - +0.2 530,130 - +0.0 530,130 - -0.2 530,130 - -0.3 530,130 - -1.2 530,130 - -0.5 530,130 - -1.2 530,130 - -0.6 530,130 - -0.2 530,130 - -0.1 530,130 - +0.4 530,130 - -0.2 530,130 - -0.5 530,133 + +0.1 530,133 + -0.2 530,133 + +0.0 530,134 - +0.2 530,134 - +1.2 530,134 - +0.6 530,238 + -0.2 530,269 - GFF489 0.11 -0.6 530,553 + GFF489 0.58 +1.4 530,553 + GFF489 0.58 -0.5 530,553 + GFF489 0.58 -1.6 530,553 + GFF489 0.58 -0.6 530,554 - GFF489 0.58 -1.5 530,554 - GFF489 0.58 +0.1 530,598 + GFF489 0.65 +0.0 530,599 - GFF489 0.65 -1.5 530,599 - GFF489 0.65 +1.4 530,599 - GFF489 0.65 -2.0 530,724 + GFF489 0.86 -0.2 530,724 + GFF489 0.86 -2.9 530,725 - GFF489 0.86 -1.0 530,725 - GFF489 0.86 -1.3 530,725 - GFF489 0.86 -1.0 530,733 + GFF489 0.87 +0.4 530,734 - GFF489 0.88 -2.0 530,734 - GFF489 0.88 -3.2 530,734 - GFF489 0.88 -1.7 530,813 + +0.2 530,813 + -0.9 530,813 + -3.3 530,813 + -0.5 530,813 + -3.5 530,813 + -1.0 530,813 + -1.5 530,813 + -3.1 530,813 + -2.2 530,813 + +1.4 530,814 - -1.5 530,814 - -0.2 530,814 - -1.5 530,814 - -2.3 530,814 - +0.4 530,814 - -0.6 530,814 - -0.8 530,814 - -1.0 530,814 - -2.1 530,814 - -0.6 530,814 - -1.8 530,814 - -0.7 530,814 - -1.1 530,814 - -1.9 530,814 - -0.8 530,814 - -1.2 530,814 - -0.5 530,814 - -0.3 530,855 + -0.9 530,855 + +0.5 530,855 + +0.1 530,855 + -1.2 530,855 + +0.7 530,856 - +0.1 530,856 - -0.8 530,856 - -1.5 530,906 + +0.1 531,064 + GFF490 0.11 +1.0 531,065 - GFF490 0.11 -2.0 531,065 - GFF490 0.11 +0.8 531,065 - GFF490 0.11 +0.8 531,065 - GFF490 0.11 -2.1 531,095 - GFF490 0.13 -0.6 531,095 - GFF490 0.13 -1.6 531,574 + GFF490 0.49 -2.1 531,574 + GFF490 0.49 +0.2 531,575 - GFF490 0.49 -1.8 531,575 - GFF490 0.49 -0.0 531,575 - GFF490 0.49 +0.1 531,794 + GFF490 0.66 +0.1 531,794 + GFF490 0.66 -0.4 531,794 + GFF490 0.66 -0.2 531,794 + GFF490 0.66 +0.1 531,794 + GFF490 0.66 -0.0 531,794 + GFF490 0.66 -0.6 531,795 - GFF490 0.66 -0.7 531,795 - GFF490 0.66 -0.5 531,795 - GFF490 0.66 +0.3 531,795 - GFF490 0.66 -0.6 532,051 + GFF490 0.85 -1.2 532,051 + GFF490 0.85 +0.7 532,051 + GFF490 0.85 -0.5 532,052 - GFF490 0.86 -0.2 532,052 - GFF490 0.86 +0.6 532,052 - GFF490 0.86 -1.1 532,064 - GFF490 0.86 +0.2 532,069 + GFF490 0.87 +0.1 532,069 + GFF490 0.87 +0.7 532,069 + GFF490 0.87 -0.5 532,070 - GFF490 0.87 -0.7 532,070 - GFF490 0.87 -1.1 532,070 - GFF490 0.87 +0.6 532,070 - GFF490 0.87 -0.5 532,070 - GFF490 0.87 -1.3 532,290 + GFF491 0.21 +0.2 532,296 + GFF491 0.26 -0.6 532,297 - GFF491 0.26 -1.1 532,297 - GFF491 0.26 +0.8 532,297 - GFF491 0.26 -0.6 532,297 - GFF491 0.26 -1.1 532,311 + GFF491 0.38 -0.2 532,311 + GFF491 0.38 +0.7 532,311 + GFF491 0.38 -0.3 532,312 - GFF491 0.39 -0.8 532,312 - GFF491 0.39 -0.3 532,312 - GFF491 0.39 -0.1 532,312 - GFF491 0.39 -0.3 532,330 + GFF491 0.55 +1.4 532,331 - GFF491 0.56 +0.5 532,331 - GFF491 0.56 -0.9 532,380 + +0.3 532,380 + -1.3 532,381 - -2.1 532,381 - +0.5 532,381 - -0.3 532,449 - -0.7 532,449 - -0.0 532,459 + -3.0 532,459 + +0.7 532,459 + +0.5 532,460 - -0.6 532,460 - +0.4 532,460 - -0.4 532,631 + GFF492 0.12 -0.6 532,631 + GFF492 0.12 +0.0 532,631 + GFF492 0.12 +0.1 532,631 + GFF492 0.12 +0.6 532,631 + GFF492 0.12 +0.1 532,631 + GFF492 0.12 -1.5 532,632 - GFF492 0.13 +0.1 532,632 - GFF492 0.13 -0.5 532,632 - GFF492 0.13 -0.8 532,632 - GFF492 0.13 -0.1 532,632 - GFF492 0.13 -0.7 533,105 + GFF492 0.61 -1.5 533,105 + GFF492 0.61 -0.2 533,105 + GFF492 0.61 -0.3 533,105 + GFF492 0.61 -2.0 533,105 + GFF492 0.61 -0.6 533,105 + GFF492 0.61 -0.6 533,105 + GFF492 0.61 +0.6 533,106 - GFF492 0.62 -0.6 533,106 - GFF492 0.62 -0.5 533,106 - GFF492 0.62 +0.2 533,106 - GFF492 0.62 +0.4 533,106 - GFF492 0.62 -0.8 533,106 - GFF492 0.62 +0.0 533,106 - GFF492 0.62 -0.1 533,106 - GFF492 0.62 -0.8 533,106 - GFF492 0.62 -0.1 533,106 - GFF492 0.62 -1.5 533,106 - GFF492 0.62 -0.2
Or see this region's nucleotide sequence