Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4876 and GFF4877 are separated by 129 nucleotides GFF4877 and GFF4878 are separated by 68 nucleotides GFF4878 and GFF4879 are separated by 280 nucleotides GFF4879 and GFF4880 are separated by 365 nucleotides
GFF4876 - FIG00973848: hypothetical protein, at 245,469 to 246,218
GFF4876
GFF4877 - no description, at 246,348 to 246,491
GFF4877
GFF4878 - putative lipoprotein, at 246,560 to 246,907
GFF4878
GFF4879 - Transcriptional regulator, Xre family, at 247,188 to 247,424
GFF4879
GFF4880 - y4eB gene in pNGR234a homolog, at 247,790 to 248,104
GFF4880
Position (kb) 246
247 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 245.608 kb on + strand, within GFF4876 at 245.608 kb on + strand, within GFF4876 at 245.609 kb on - strand, within GFF4876 at 245.609 kb on - strand, within GFF4876 at 245.609 kb on - strand, within GFF4876 at 245.609 kb on - strand, within GFF4876 at 245.609 kb on - strand, within GFF4876 at 245.649 kb on + strand, within GFF4876 at 245.649 kb on + strand, within GFF4876 at 245.649 kb on + strand, within GFF4876 at 245.649 kb on + strand, within GFF4876 at 245.649 kb on + strand, within GFF4876 at 245.649 kb on + strand, within GFF4876 at 245.649 kb on + strand, within GFF4876 at 245.649 kb on + strand, within GFF4876 at 245.650 kb on - strand, within GFF4876 at 245.650 kb on - strand, within GFF4876 at 245.650 kb on - strand, within GFF4876 at 245.650 kb on - strand, within GFF4876 at 245.650 kb on - strand, within GFF4876 at 245.650 kb on - strand, within GFF4876 at 245.658 kb on + strand, within GFF4876 at 245.659 kb on - strand, within GFF4876 at 245.794 kb on + strand, within GFF4876 at 245.794 kb on + strand, within GFF4876 at 245.794 kb on + strand, within GFF4876 at 245.794 kb on + strand, within GFF4876 at 245.795 kb on - strand, within GFF4876 at 245.795 kb on - strand, within GFF4876 at 245.795 kb on - strand, within GFF4876 at 245.836 kb on + strand, within GFF4876 at 245.836 kb on + strand, within GFF4876 at 245.836 kb on + strand, within GFF4876 at 245.837 kb on - strand, within GFF4876 at 246.127 kb on + strand, within GFF4876 at 246.127 kb on + strand, within GFF4876 at 246.127 kb on + strand, within GFF4876 at 246.127 kb on + strand, within GFF4876 at 246.128 kb on - strand, within GFF4876 at 246.128 kb on - strand, within GFF4876 at 246.149 kb on + strand at 246.149 kb on + strand at 246.166 kb on + strand at 246.166 kb on + strand at 246.166 kb on + strand at 246.166 kb on + strand at 246.166 kb on + strand at 246.166 kb on + strand at 246.166 kb on + strand at 246.167 kb on - strand at 246.167 kb on - strand at 246.167 kb on - strand at 246.167 kb on - strand at 246.172 kb on + strand at 246.172 kb on + strand at 246.173 kb on - strand at 246.173 kb on - strand at 246.173 kb on - strand at 246.234 kb on - strand at 246.285 kb on + strand at 246.285 kb on + strand at 246.285 kb on + strand at 246.285 kb on + strand at 246.286 kb on - strand at 246.286 kb on - strand at 246.286 kb on - strand at 246.302 kb on + strand at 246.302 kb on + strand at 246.302 kb on + strand at 246.302 kb on + strand at 246.303 kb on - strand at 246.310 kb on + strand at 246.311 kb on - strand at 246.311 kb on - strand at 246.311 kb on - strand at 246.311 kb on - strand at 246.315 kb on + strand at 246.315 kb on + strand at 246.315 kb on + strand at 246.315 kb on + strand at 246.315 kb on + strand at 246.316 kb on - strand at 246.316 kb on - strand at 246.316 kb on - strand at 246.316 kb on - strand at 246.316 kb on - strand at 246.316 kb on - strand at 246.316 kb on - strand at 246.316 kb on - strand at 246.318 kb on + strand at 246.319 kb on - strand at 246.319 kb on - strand at 246.410 kb on - strand, within GFF4877 at 246.489 kb on + strand at 246.489 kb on + strand at 246.489 kb on + strand at 246.489 kb on + strand at 246.489 kb on + strand at 246.489 kb on + strand at 246.489 kb on + strand at 246.489 kb on + strand at 246.489 kb on + strand at 246.489 kb on + strand at 246.489 kb on + strand at 246.489 kb on + strand at 246.490 kb on - strand at 246.490 kb on - strand at 246.490 kb on - strand at 246.490 kb on - strand at 246.490 kb on - strand at 246.490 kb on - strand at 246.490 kb on - strand at 246.490 kb on - strand at 246.521 kb on + strand at 246.521 kb on + strand at 246.521 kb on + strand at 246.521 kb on + strand at 246.521 kb on + strand at 246.522 kb on - strand at 246.522 kb on - strand at 246.522 kb on - strand at 246.522 kb on - strand at 246.540 kb on + strand at 246.540 kb on + strand at 246.541 kb on - strand at 246.541 kb on - strand at 246.586 kb on + strand at 246.587 kb on - strand at 246.600 kb on + strand, within GFF4878 at 246.600 kb on + strand, within GFF4878 at 246.600 kb on + strand, within GFF4878 at 246.600 kb on + strand, within GFF4878 at 246.630 kb on + strand, within GFF4878 at 246.630 kb on + strand, within GFF4878 at 246.631 kb on - strand, within GFF4878 at 246.739 kb on - strand, within GFF4878 at 246.811 kb on - strand, within GFF4878 at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.907 kb on + strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.908 kb on - strand at 246.911 kb on + strand at 246.911 kb on + strand at 246.911 kb on + strand at 246.912 kb on - strand at 246.912 kb on - strand at 246.912 kb on - strand at 246.912 kb on - strand at 246.912 kb on - strand at 246.925 kb on + strand at 246.926 kb on - strand at 247.019 kb on + strand at 247.019 kb on + strand at 247.020 kb on - strand at 247.049 kb on - strand at 247.049 kb on - strand at 247.049 kb on - strand at 247.054 kb on + strand at 247.054 kb on + strand at 247.054 kb on + strand at 247.055 kb on - strand at 247.055 kb on - strand at 247.079 kb on - strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.145 kb on + strand at 247.146 kb on - strand at 247.146 kb on - strand at 247.146 kb on - strand at 247.146 kb on - strand at 247.146 kb on - strand at 247.146 kb on - strand at 247.146 kb on - strand at 247.146 kb on - strand at 247.146 kb on - strand at 247.146 kb on - strand at 247.146 kb on - strand at 247.146 kb on - strand at 247.163 kb on - strand at 247.163 kb on - strand at 247.163 kb on - strand at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.227 kb on + strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.228 kb on - strand, within GFF4879 at 247.235 kb on + strand, within GFF4879 at 247.235 kb on + strand, within GFF4879 at 247.235 kb on + strand, within GFF4879 at 247.235 kb on + strand, within GFF4879 at 247.235 kb on + strand, within GFF4879 at 247.235 kb on + strand, within GFF4879 at 247.235 kb on + strand, within GFF4879 at 247.236 kb on - strand, within GFF4879 at 247.236 kb on - strand, within GFF4879 at 247.236 kb on - strand, within GFF4879 at 247.236 kb on - strand, within GFF4879 at 247.332 kb on + strand, within GFF4879 at 247.332 kb on + strand, within GFF4879 at 247.332 kb on + strand, within GFF4879 at 247.332 kb on + strand, within GFF4879 at 247.332 kb on + strand, within GFF4879 at 247.332 kb on + strand, within GFF4879 at 247.333 kb on - strand, within GFF4879 at 247.333 kb on - strand, within GFF4879 at 247.333 kb on - strand, within GFF4879 at 247.422 kb on + strand at 247.422 kb on + strand at 247.422 kb on + strand at 247.423 kb on - strand at 247.423 kb on - strand at 247.504 kb on + strand at 247.854 kb on - strand, within GFF4880 at 247.863 kb on + strand, within GFF4880 at 247.863 kb on + strand, within GFF4880 at 247.863 kb on + strand, within GFF4880 at 247.863 kb on + strand, within GFF4880 at 247.864 kb on - strand, within GFF4880 at 247.864 kb on - strand, within GFF4880
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 245,608 + GFF4876 0.19 +0.3 245,608 + GFF4876 0.19 -0.2 245,609 - GFF4876 0.19 +0.1 245,609 - GFF4876 0.19 -0.6 245,609 - GFF4876 0.19 +0.5 245,609 - GFF4876 0.19 +0.0 245,609 - GFF4876 0.19 -1.6 245,649 + GFF4876 0.24 -0.1 245,649 + GFF4876 0.24 +0.1 245,649 + GFF4876 0.24 -0.2 245,649 + GFF4876 0.24 -0.8 245,649 + GFF4876 0.24 +0.0 245,649 + GFF4876 0.24 +0.1 245,649 + GFF4876 0.24 +1.4 245,649 + GFF4876 0.24 +0.7 245,650 - GFF4876 0.24 -0.1 245,650 - GFF4876 0.24 -1.4 245,650 - GFF4876 0.24 -0.7 245,650 - GFF4876 0.24 -0.6 245,650 - GFF4876 0.24 -0.3 245,650 - GFF4876 0.24 -1.2 245,658 + GFF4876 0.25 +0.3 245,659 - GFF4876 0.25 -0.5 245,794 + GFF4876 0.43 +0.4 245,794 + GFF4876 0.43 -1.2 245,794 + GFF4876 0.43 -0.3 245,794 + GFF4876 0.43 -0.6 245,795 - GFF4876 0.43 +1.7 245,795 - GFF4876 0.43 -0.4 245,795 - GFF4876 0.43 -0.1 245,836 + GFF4876 0.49 +0.6 245,836 + GFF4876 0.49 -0.5 245,836 + GFF4876 0.49 +0.3 245,837 - GFF4876 0.49 +0.2 246,127 + GFF4876 0.88 +0.3 246,127 + GFF4876 0.88 -0.6 246,127 + GFF4876 0.88 -1.4 246,127 + GFF4876 0.88 +0.7 246,128 - GFF4876 0.88 +1.7 246,128 - GFF4876 0.88 -0.2 246,149 + -0.5 246,149 + +0.5 246,166 + +0.8 246,166 + -2.5 246,166 + -0.3 246,166 + +0.3 246,166 + +0.5 246,166 + -0.2 246,166 + -0.5 246,167 - +0.3 246,167 - -0.7 246,167 - -2.9 246,167 - -1.4 246,172 + -1.0 246,172 + -0.4 246,173 - -0.4 246,173 - -0.2 246,173 - +0.1 246,234 - +1.8 246,285 + -0.4 246,285 + -1.6 246,285 + +0.2 246,285 + -0.9 246,286 - -0.8 246,286 - -0.9 246,286 - -0.4 246,302 + -0.7 246,302 + -0.5 246,302 + -0.1 246,302 + +1.4 246,303 - +0.2 246,310 + -0.8 246,311 - +0.3 246,311 - +0.6 246,311 - +0.6 246,311 - +0.4 246,315 + -0.7 246,315 + +0.2 246,315 + +1.1 246,315 + +1.0 246,315 + +1.0 246,316 - -1.1 246,316 - -0.8 246,316 - -0.0 246,316 - +0.1 246,316 - -0.4 246,316 - -0.5 246,316 - -0.9 246,316 - +0.1 246,318 + -2.2 246,319 - -1.7 246,319 - +0.6 246,410 - GFF4877 0.43 -0.3 246,489 + +0.1 246,489 + -0.7 246,489 + +0.6 246,489 + -0.4 246,489 + +2.1 246,489 + +0.3 246,489 + -0.3 246,489 + -0.9 246,489 + +0.8 246,489 + +0.0 246,489 + +0.3 246,489 + +0.6 246,490 - +0.5 246,490 - +0.3 246,490 - +0.0 246,490 - +0.4 246,490 - -0.9 246,490 - -3.5 246,490 - -0.3 246,490 - -0.2 246,521 + -0.2 246,521 + +0.7 246,521 + +0.6 246,521 + -0.3 246,521 + -0.2 246,522 - -0.8 246,522 - -0.0 246,522 - -0.8 246,522 - -0.4 246,540 + +0.8 246,540 + +1.0 246,541 - +0.5 246,541 - -0.3 246,586 + +0.8 246,587 - -0.1 246,600 + GFF4878 0.11 +0.1 246,600 + GFF4878 0.11 +0.4 246,600 + GFF4878 0.11 +0.2 246,600 + GFF4878 0.11 -1.2 246,630 + GFF4878 0.20 -1.8 246,630 + GFF4878 0.20 +1.2 246,631 - GFF4878 0.20 +0.8 246,739 - GFF4878 0.51 +0.9 246,811 - GFF4878 0.72 -0.2 246,907 + +1.3 246,907 + +0.8 246,907 + -0.6 246,907 + -0.9 246,907 + -0.6 246,907 + -0.8 246,907 + +0.0 246,907 + +1.4 246,907 + -0.9 246,907 + -0.0 246,907 + +2.2 246,907 + +0.4 246,907 + -0.4 246,907 + -0.1 246,907 + -0.8 246,907 + +0.4 246,907 + +2.1 246,907 + -0.5 246,907 + -1.1 246,907 + +0.6 246,907 + -0.3 246,907 + +0.4 246,907 + -0.3 246,907 + -0.6 246,907 + -0.2 246,907 + -0.2 246,907 + +0.8 246,907 + -0.6 246,907 + -0.1 246,908 - +0.9 246,908 - +1.3 246,908 - -0.2 246,908 - -0.3 246,908 - +0.6 246,908 - -1.2 246,908 - -0.9 246,908 - +1.0 246,908 - +0.1 246,908 - +1.1 246,908 - -0.4 246,908 - -0.1 246,908 - -0.1 246,908 - +0.4 246,908 - +0.9 246,908 - +0.0 246,908 - +0.2 246,908 - -0.2 246,908 - -0.5 246,908 - -0.1 246,908 - +0.1 246,908 - +0.2 246,908 - -2.2 246,908 - -0.8 246,908 - -1.3 246,908 - +1.1 246,908 - +0.6 246,908 - -2.3 246,908 - +0.1 246,908 - +1.3 246,908 - -0.6 246,911 + -0.2 246,911 + -1.3 246,911 + -1.2 246,912 - -0.3 246,912 - +0.1 246,912 - -0.7 246,912 - -0.6 246,912 - +0.6 246,925 + +0.8 246,926 - -1.7 247,019 + -0.4 247,019 + -0.2 247,020 - -0.1 247,049 - -1.0 247,049 - +0.2 247,049 - -0.2 247,054 + +0.5 247,054 + +1.1 247,054 + +0.4 247,055 - +0.8 247,055 - -0.0 247,079 - +0.0 247,145 + -0.4 247,145 + +1.4 247,145 + +1.7 247,145 + +0.0 247,145 + +1.2 247,145 + -0.6 247,145 + -0.1 247,145 + -0.4 247,145 + -1.2 247,145 + -0.3 247,145 + -0.7 247,145 + -0.9 247,145 + -0.1 247,145 + -0.4 247,145 + +0.2 247,145 + +1.1 247,145 + -0.5 247,146 - -0.2 247,146 - -1.2 247,146 - +1.0 247,146 - +0.0 247,146 - +0.6 247,146 - -0.3 247,146 - -0.1 247,146 - -0.3 247,146 - +0.1 247,146 - -0.1 247,146 - -0.4 247,146 - -0.2 247,163 - +2.1 247,163 - -0.1 247,163 - -0.0 247,227 + GFF4879 0.16 -1.4 247,227 + GFF4879 0.16 -0.7 247,227 + GFF4879 0.16 -0.1 247,227 + GFF4879 0.16 -0.4 247,227 + GFF4879 0.16 +0.7 247,227 + GFF4879 0.16 +0.0 247,227 + GFF4879 0.16 -2.2 247,227 + GFF4879 0.16 -0.8 247,227 + GFF4879 0.16 -0.5 247,227 + GFF4879 0.16 -0.5 247,227 + GFF4879 0.16 +0.2 247,227 + GFF4879 0.16 -0.5 247,227 + GFF4879 0.16 -0.8 247,227 + GFF4879 0.16 +0.7 247,227 + GFF4879 0.16 -0.0 247,227 + GFF4879 0.16 +0.8 247,227 + GFF4879 0.16 -0.2 247,227 + GFF4879 0.16 -1.1 247,227 + GFF4879 0.16 +0.8 247,227 + GFF4879 0.16 -0.9 247,227 + GFF4879 0.16 -0.0 247,227 + GFF4879 0.16 -0.2 247,228 - GFF4879 0.17 +0.4 247,228 - GFF4879 0.17 -0.4 247,228 - GFF4879 0.17 +0.1 247,228 - GFF4879 0.17 -0.6 247,228 - GFF4879 0.17 -1.0 247,228 - GFF4879 0.17 +3.0 247,228 - GFF4879 0.17 -0.3 247,228 - GFF4879 0.17 -0.1 247,228 - GFF4879 0.17 -0.6 247,228 - GFF4879 0.17 +0.6 247,228 - GFF4879 0.17 +0.4 247,228 - GFF4879 0.17 +0.1 247,228 - GFF4879 0.17 -0.6 247,228 - GFF4879 0.17 +0.6 247,228 - GFF4879 0.17 -1.1 247,228 - GFF4879 0.17 +1.0 247,228 - GFF4879 0.17 +0.4 247,235 + GFF4879 0.20 +0.8 247,235 + GFF4879 0.20 +0.1 247,235 + GFF4879 0.20 -0.2 247,235 + GFF4879 0.20 -0.4 247,235 + GFF4879 0.20 -0.5 247,235 + GFF4879 0.20 +1.0 247,235 + GFF4879 0.20 +0.3 247,236 - GFF4879 0.20 -0.4 247,236 - GFF4879 0.20 -1.1 247,236 - GFF4879 0.20 -0.1 247,236 - GFF4879 0.20 -1.3 247,332 + GFF4879 0.61 -0.9 247,332 + GFF4879 0.61 +0.9 247,332 + GFF4879 0.61 -0.2 247,332 + GFF4879 0.61 +0.3 247,332 + GFF4879 0.61 +0.3 247,332 + GFF4879 0.61 -0.8 247,333 - GFF4879 0.61 -0.6 247,333 - GFF4879 0.61 +1.4 247,333 - GFF4879 0.61 +0.1 247,422 + -1.0 247,422 + -1.2 247,422 + +0.5 247,423 - -2.8 247,423 - -1.3 247,504 + -0.4 247,854 - GFF4880 0.20 -0.0 247,863 + GFF4880 0.23 -1.8 247,863 + GFF4880 0.23 +1.0 247,863 + GFF4880 0.23 -0.4 247,863 + GFF4880 0.23 +0.2 247,864 - GFF4880 0.23 -0.8 247,864 - GFF4880 0.23 -0.6
Or see this region's nucleotide sequence