Strain Fitness in Variovorax sp. SCN45 around GFF487

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF486 and GFF487 are separated by 489 nucleotidesGFF487 and GFF488 are separated by 23 nucleotides GFF486 - FIG00582348: hypothetical protein, at 525,233 to 525,874 GFF486 GFF487 - ATP-dependent protease La (EC 3.4.21.53) Type I, at 526,364 to 528,805 GFF487 GFF488 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 528,829 to 530,094 GFF488 Position (kb) 526 527 528 529Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 525.431 kb on + strand, within GFF486at 525.431 kb on + strand, within GFF486at 525.432 kb on - strand, within GFF486at 525.432 kb on - strand, within GFF486at 525.432 kb on - strand, within GFF486at 525.564 kb on + strand, within GFF486at 525.564 kb on + strand, within GFF486at 525.564 kb on + strand, within GFF486at 525.565 kb on - strand, within GFF486at 525.723 kb on + strand, within GFF486at 525.723 kb on + strand, within GFF486at 525.723 kb on + strand, within GFF486at 525.723 kb on + strand, within GFF486at 525.723 kb on + strand, within GFF486at 525.723 kb on + strand, within GFF486at 525.723 kb on + strand, within GFF486at 525.724 kb on - strand, within GFF486at 525.724 kb on - strand, within GFF486at 525.724 kb on - strand, within GFF486at 525.724 kb on - strand, within GFF486at 525.724 kb on - strand, within GFF486at 525.724 kb on - strand, within GFF486at 525.724 kb on - strand, within GFF486at 525.724 kb on - strand, within GFF486at 525.765 kb on + strand, within GFF486at 525.766 kb on - strand, within GFF486at 525.766 kb on - strand, within GFF486at 525.766 kb on - strand, within GFF486at 525.766 kb on - strand, within GFF486at 525.864 kb on + strandat 525.864 kb on + strandat 525.864 kb on + strandat 525.864 kb on + strandat 525.864 kb on + strandat 525.864 kb on + strandat 525.864 kb on + strandat 525.864 kb on + strandat 525.865 kb on - strandat 525.865 kb on - strandat 525.865 kb on - strandat 525.865 kb on - strandat 525.889 kb on + strandat 525.889 kb on + strandat 525.889 kb on + strandat 525.889 kb on + strandat 525.889 kb on + strandat 525.890 kb on - strandat 525.890 kb on - strandat 525.890 kb on - strandat 525.890 kb on - strandat 525.890 kb on - strandat 525.890 kb on - strandat 526.008 kb on - strandat 526.116 kb on - strandat 526.318 kb on - strandat 526.320 kb on - strandat 526.326 kb on - strandat 526.326 kb on - strandat 526.992 kb on - strand, within GFF487at 527.043 kb on + strand, within GFF487at 527.044 kb on - strand, within GFF487at 527.044 kb on - strand, within GFF487at 527.044 kb on - strand, within GFF487at 527.044 kb on - strand, within GFF487at 527.044 kb on - strand, within GFF487at 527.044 kb on - strand, within GFF487at 527.044 kb on - strand, within GFF487at 527.190 kb on + strand, within GFF487at 527.190 kb on + strand, within GFF487at 527.190 kb on + strand, within GFF487at 527.190 kb on + strand, within GFF487at 527.190 kb on + strand, within GFF487at 527.190 kb on + strand, within GFF487at 527.191 kb on - strand, within GFF487at 527.191 kb on - strand, within GFF487at 527.191 kb on - strand, within GFF487at 527.193 kb on + strand, within GFF487at 527.193 kb on + strand, within GFF487at 527.194 kb on - strand, within GFF487at 527.194 kb on - strand, within GFF487at 527.280 kb on + strand, within GFF487at 527.281 kb on - strand, within GFF487at 527.316 kb on + strand, within GFF487at 527.317 kb on - strand, within GFF487at 527.427 kb on + strand, within GFF487at 527.427 kb on + strand, within GFF487at 527.427 kb on + strand, within GFF487at 527.427 kb on + strand, within GFF487at 527.427 kb on + strand, within GFF487at 527.427 kb on + strand, within GFF487at 527.427 kb on + strand, within GFF487at 527.428 kb on - strand, within GFF487at 527.428 kb on - strand, within GFF487at 527.428 kb on - strand, within GFF487at 527.601 kb on + strand, within GFF487at 527.601 kb on + strand, within GFF487at 527.601 kb on + strand, within GFF487at 527.601 kb on + strand, within GFF487at 527.601 kb on + strand, within GFF487at 527.601 kb on + strand, within GFF487at 527.602 kb on - strand, within GFF487at 527.602 kb on - strand, within GFF487at 527.602 kb on - strand, within GFF487at 527.602 kb on - strand, within GFF487at 527.602 kb on - strand, within GFF487at 527.602 kb on - strand, within GFF487at 527.602 kb on - strand, within GFF487at 527.664 kb on + strand, within GFF487at 527.664 kb on + strand, within GFF487at 527.664 kb on + strand, within GFF487at 527.664 kb on + strand, within GFF487at 527.664 kb on + strand, within GFF487at 527.665 kb on - strand, within GFF487at 527.665 kb on - strand, within GFF487at 527.784 kb on + strand, within GFF487at 527.784 kb on + strand, within GFF487at 527.785 kb on - strand, within GFF487at 527.785 kb on - strand, within GFF487at 527.785 kb on - strand, within GFF487at 527.820 kb on + strand, within GFF487at 527.821 kb on - strand, within GFF487at 527.913 kb on + strand, within GFF487at 527.913 kb on + strand, within GFF487at 527.913 kb on + strand, within GFF487at 527.913 kb on + strand, within GFF487at 527.914 kb on - strand, within GFF487at 527.914 kb on - strand, within GFF487at 527.914 kb on - strand, within GFF487at 527.914 kb on - strand, within GFF487at 527.914 kb on - strand, within GFF487at 527.914 kb on - strand, within GFF487at 527.914 kb on - strand, within GFF487at 527.914 kb on - strand, within GFF487at 528.106 kb on - strand, within GFF487at 528.106 kb on - strand, within GFF487at 528.106 kb on - strand, within GFF487at 528.369 kb on + strand, within GFF487at 528.369 kb on + strand, within GFF487at 528.369 kb on + strand, within GFF487at 528.369 kb on + strand, within GFF487at 528.370 kb on - strand, within GFF487at 528.370 kb on - strand, within GFF487at 528.370 kb on - strand, within GFF487at 528.370 kb on - strand, within GFF487at 528.603 kb on - strandat 528.603 kb on - strandat 528.830 kb on + strandat 528.830 kb on + strandat 528.831 kb on - strandat 528.831 kb on - strandat 528.831 kb on - strandat 529.541 kb on + strand, within GFF488at 529.541 kb on + strand, within GFF488at 529.541 kb on + strand, within GFF488at 529.542 kb on - strand, within GFF488at 529.542 kb on - strand, within GFF488at 529.542 kb on - strand, within GFF488at 529.542 kb on - strand, within GFF488at 529.542 kb on - strand, within GFF488at 529.574 kb on + strand, within GFF488at 529.574 kb on + strand, within GFF488at 529.574 kb on + strand, within GFF488at 529.574 kb on + strand, within GFF488at 529.575 kb on - strand, within GFF488at 529.575 kb on - strand, within GFF488at 529.575 kb on - strand, within GFF488at 529.575 kb on - strand, within GFF488at 529.575 kb on - strand, within GFF488at 529.575 kb on - strand, within GFF488at 529.575 kb on - strand, within GFF488at 529.575 kb on - strand, within GFF488at 529.628 kb on + strand, within GFF488at 529.628 kb on + strand, within GFF488at 529.629 kb on - strand, within GFF488at 529.785 kb on - strand, within GFF488at 529.805 kb on + strand, within GFF488at 529.805 kb on + strand, within GFF488at 529.805 kb on + strand, within GFF488at 529.805 kb on + strand, within GFF488at 529.805 kb on + strand, within GFF488at 529.805 kb on + strand, within GFF488at 529.805 kb on + strand, within GFF488

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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525,431 + GFF486 0.31 -1.0
525,431 + GFF486 0.31 -0.1
525,432 - GFF486 0.31 -0.6
525,432 - GFF486 0.31 +0.7
525,432 - GFF486 0.31 -0.3
525,564 + GFF486 0.52 -0.2
525,564 + GFF486 0.52 +0.4
525,564 + GFF486 0.52 -0.5
525,565 - GFF486 0.52 -1.0
525,723 + GFF486 0.76 -0.3
525,723 + GFF486 0.76 -0.3
525,723 + GFF486 0.76 -0.4
525,723 + GFF486 0.76 -0.0
525,723 + GFF486 0.76 -0.3
525,723 + GFF486 0.76 +2.1
525,723 + GFF486 0.76 -1.6
525,724 - GFF486 0.76 +0.5
525,724 - GFF486 0.76 -0.6
525,724 - GFF486 0.76 +0.5
525,724 - GFF486 0.76 +2.4
525,724 - GFF486 0.76 -0.4
525,724 - GFF486 0.76 -0.2
525,724 - GFF486 0.76 -2.3
525,724 - GFF486 0.76 -0.4
525,765 + GFF486 0.83 -0.3
525,766 - GFF486 0.83 +1.9
525,766 - GFF486 0.83 -0.1
525,766 - GFF486 0.83 -0.6
525,766 - GFF486 0.83 -0.2
525,864 + -1.0
525,864 + +0.1
525,864 + +0.7
525,864 + -0.1
525,864 + -0.2
525,864 + -1.3
525,864 + -1.7
525,864 + -0.1
525,865 - +0.0
525,865 - +0.5
525,865 - -0.6
525,865 - -0.3
525,889 + +0.9
525,889 + +0.4
525,889 + +0.4
525,889 + -1.6
525,889 + -0.0
525,890 - +0.1
525,890 - -0.5
525,890 - -0.9
525,890 - +0.1
525,890 - -0.2
525,890 - -1.5
526,008 - +0.4
526,116 - +0.8
526,318 - +0.4
526,320 - -0.5
526,326 - +0.0
526,326 - -0.2
526,992 - GFF487 0.26 -0.1
527,043 + GFF487 0.28 +1.4
527,044 - GFF487 0.28 -2.3
527,044 - GFF487 0.28 +0.0
527,044 - GFF487 0.28 -1.5
527,044 - GFF487 0.28 -2.2
527,044 - GFF487 0.28 +1.4
527,044 - GFF487 0.28 -1.8
527,044 - GFF487 0.28 -2.0
527,190 + GFF487 0.34 -1.2
527,190 + GFF487 0.34 -0.8
527,190 + GFF487 0.34 +0.4
527,190 + GFF487 0.34 -0.6
527,190 + GFF487 0.34 -1.5
527,190 + GFF487 0.34 +0.0
527,191 - GFF487 0.34 -0.6
527,191 - GFF487 0.34 -1.8
527,191 - GFF487 0.34 +0.6
527,193 + GFF487 0.34 -2.9
527,193 + GFF487 0.34 +1.0
527,194 - GFF487 0.34 -1.0
527,194 - GFF487 0.34 -0.2
527,280 + GFF487 0.38 -1.6
527,281 - GFF487 0.38 -0.1
527,316 + GFF487 0.39 -2.6
527,317 - GFF487 0.39 -2.2
527,427 + GFF487 0.44 -0.6
527,427 + GFF487 0.44 -2.0
527,427 + GFF487 0.44 +0.0
527,427 + GFF487 0.44 +1.0
527,427 + GFF487 0.44 -1.1
527,427 + GFF487 0.44 -1.8
527,427 + GFF487 0.44 -1.5
527,428 - GFF487 0.44 -0.6
527,428 - GFF487 0.44 -1.2
527,428 - GFF487 0.44 -1.0
527,601 + GFF487 0.51 -0.1
527,601 + GFF487 0.51 -0.6
527,601 + GFF487 0.51 -1.7
527,601 + GFF487 0.51 -0.8
527,601 + GFF487 0.51 -0.5
527,601 + GFF487 0.51 -0.4
527,602 - GFF487 0.51 -1.5
527,602 - GFF487 0.51 -2.9
527,602 - GFF487 0.51 -0.2
527,602 - GFF487 0.51 -2.3
527,602 - GFF487 0.51 -2.5
527,602 - GFF487 0.51 -0.2
527,602 - GFF487 0.51 -1.1
527,664 + GFF487 0.53 -1.0
527,664 + GFF487 0.53 -3.0
527,664 + GFF487 0.53 -1.8
527,664 + GFF487 0.53 -1.7
527,664 + GFF487 0.53 -0.2
527,665 - GFF487 0.53 -1.0
527,665 - GFF487 0.53 -1.0
527,784 + GFF487 0.58 +0.0
527,784 + GFF487 0.58 -1.3
527,785 - GFF487 0.58 -0.8
527,785 - GFF487 0.58 +0.4
527,785 - GFF487 0.58 -1.0
527,820 + GFF487 0.60 -1.0
527,821 - GFF487 0.60 -1.2
527,913 + GFF487 0.63 -1.5
527,913 + GFF487 0.63 -1.8
527,913 + GFF487 0.63 -0.2
527,913 + GFF487 0.63 -0.2
527,914 - GFF487 0.63 -0.6
527,914 - GFF487 0.63 +0.0
527,914 - GFF487 0.63 -1.5
527,914 - GFF487 0.63 -0.1
527,914 - GFF487 0.63 -1.6
527,914 - GFF487 0.63 -3.4
527,914 - GFF487 0.63 -1.2
527,914 - GFF487 0.63 -0.2
528,106 - GFF487 0.71 -0.3
528,106 - GFF487 0.71 -1.8
528,106 - GFF487 0.71 -0.1
528,369 + GFF487 0.82 -0.2
528,369 + GFF487 0.82 -0.6
528,369 + GFF487 0.82 +0.9
528,369 + GFF487 0.82 -0.2
528,370 - GFF487 0.82 -0.5
528,370 - GFF487 0.82 +0.8
528,370 - GFF487 0.82 -0.4
528,370 - GFF487 0.82 +0.4
528,603 - -2.5
528,603 - -1.7
528,830 + -1.1
528,830 + -1.0
528,831 - -1.0
528,831 - -2.0
528,831 - +0.4
529,541 + GFF488 0.56 -2.6
529,541 + GFF488 0.56 -1.5
529,541 + GFF488 0.56 +1.4
529,542 - GFF488 0.56 -1.6
529,542 - GFF488 0.56 +0.2
529,542 - GFF488 0.56 -1.2
529,542 - GFF488 0.56 -1.0
529,542 - GFF488 0.56 -0.2
529,574 + GFF488 0.59 -1.4
529,574 + GFF488 0.59 -0.2
529,574 + GFF488 0.59 -1.7
529,574 + GFF488 0.59 -1.1
529,575 - GFF488 0.59 -0.6
529,575 - GFF488 0.59 -1.6
529,575 - GFF488 0.59 -0.9
529,575 - GFF488 0.59 +0.2
529,575 - GFF488 0.59 -1.3
529,575 - GFF488 0.59 -2.1
529,575 - GFF488 0.59 +0.6
529,575 - GFF488 0.59 -1.2
529,628 + GFF488 0.63 +0.4
529,628 + GFF488 0.63 +0.0
529,629 - GFF488 0.63 +0.2
529,785 - GFF488 0.76 -0.2
529,805 + GFF488 0.77 -0.5
529,805 + GFF488 0.77 -0.6
529,805 + GFF488 0.77 -0.9
529,805 + GFF488 0.77 +0.4
529,805 + GFF488 0.77 -1.2
529,805 + GFF488 0.77 -0.5
529,805 + GFF488 0.77 -2.5

Or see this region's nucleotide sequence