Strain Fitness in Variovorax sp. SCN45 around GFF4552

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4550 and GFF4551 overlap by 1 nucleotidesGFF4551 and GFF4552 are separated by 8 nucleotidesGFF4552 and GFF4553 are separated by 51 nucleotides GFF4550 - NAD(FAD)-utilizing dehydrogenase, sll0175 homolog, at 187,099 to 188,784 GFF4550 GFF4551 - Putative preQ0 transporter YhhQ, at 188,784 to 189,353 GFF4551 GFF4552 - Nitrilotriacetate monooxygenase component B (EC 1.14.13.-), at 189,362 to 189,991 GFF4552 GFF4553 - RNA chaperone ProQ, at 190,043 to 191,032 GFF4553 Position (kb) 189 190Strain fitness (log2 ratio) -2 -1 0 1 2at 188.365 kb on + strand, within GFF4550at 188.443 kb on + strand, within GFF4550at 188.443 kb on + strand, within GFF4550at 188.443 kb on + strand, within GFF4550at 188.443 kb on + strand, within GFF4550at 188.443 kb on + strand, within GFF4550at 188.444 kb on - strand, within GFF4550at 188.444 kb on - strand, within GFF4550at 188.444 kb on - strand, within GFF4550at 188.444 kb on - strand, within GFF4550at 188.491 kb on + strand, within GFF4550at 188.491 kb on + strand, within GFF4550at 188.491 kb on + strand, within GFF4550at 188.492 kb on - strand, within GFF4550at 188.677 kb on + strandat 188.678 kb on - strandat 188.928 kb on + strand, within GFF4551at 188.928 kb on + strand, within GFF4551at 188.928 kb on + strand, within GFF4551at 188.929 kb on - strand, within GFF4551at 188.929 kb on - strand, within GFF4551at 188.929 kb on - strand, within GFF4551at 188.929 kb on - strand, within GFF4551at 188.929 kb on - strand, within GFF4551at 188.929 kb on - strand, within GFF4551at 188.940 kb on + strand, within GFF4551at 188.940 kb on + strand, within GFF4551at 188.940 kb on + strand, within GFF4551at 188.940 kb on + strand, within GFF4551at 188.940 kb on + strand, within GFF4551at 188.940 kb on + strand, within GFF4551at 188.941 kb on - strand, within GFF4551at 188.941 kb on - strand, within GFF4551at 188.941 kb on - strand, within GFF4551at 189.392 kb on + strandat 189.392 kb on + strandat 189.392 kb on + strandat 189.392 kb on + strandat 189.392 kb on + strandat 189.392 kb on + strandat 189.392 kb on + strandat 189.393 kb on - strandat 189.393 kb on - strandat 189.393 kb on - strandat 189.393 kb on - strandat 189.393 kb on - strandat 189.393 kb on - strandat 189.509 kb on + strand, within GFF4552at 189.533 kb on + strand, within GFF4552at 189.533 kb on + strand, within GFF4552at 189.534 kb on - strand, within GFF4552at 189.534 kb on - strand, within GFF4552at 189.534 kb on - strand, within GFF4552at 189.534 kb on - strand, within GFF4552at 189.534 kb on - strand, within GFF4552at 189.534 kb on - strand, within GFF4552at 189.534 kb on - strand, within GFF4552at 189.534 kb on - strand, within GFF4552at 189.534 kb on - strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.891 kb on - strand, within GFF4552at 189.891 kb on - strand, within GFF4552at 189.891 kb on - strand, within GFF4552at 189.891 kb on - strand, within GFF4552at 189.891 kb on - strand, within GFF4552at 189.941 kb on + strandat 189.941 kb on + strandat 189.941 kb on + strandat 189.941 kb on + strandat 189.941 kb on + strandat 189.942 kb on - strandat 189.942 kb on - strandat 189.942 kb on - strandat 189.942 kb on - strandat 190.358 kb on + strand, within GFF4553at 190.358 kb on + strand, within GFF4553at 190.358 kb on + strand, within GFF4553at 190.359 kb on - strand, within GFF4553at 190.406 kb on + strand, within GFF4553at 190.407 kb on - strand, within GFF4553at 190.407 kb on - strand, within GFF4553at 190.407 kb on - strand, within GFF4553at 190.407 kb on - strand, within GFF4553at 190.493 kb on + strand, within GFF4553at 190.494 kb on - strand, within GFF4553at 190.494 kb on - strand, within GFF4553at 190.700 kb on + strand, within GFF4553at 190.700 kb on + strand, within GFF4553at 190.700 kb on + strand, within GFF4553at 190.700 kb on + strand, within GFF4553at 190.700 kb on + strand, within GFF4553at 190.700 kb on + strand, within GFF4553at 190.700 kb on + strand, within GFF4553at 190.700 kb on + strand, within GFF4553at 190.700 kb on + strand, within GFF4553at 190.701 kb on - strand, within GFF4553at 190.701 kb on - strand, within GFF4553at 190.701 kb on - strand, within GFF4553at 190.701 kb on - strand, within GFF4553at 190.701 kb on - strand, within GFF4553at 190.701 kb on - strand, within GFF4553at 190.701 kb on - strand, within GFF4553at 190.701 kb on - strand, within GFF4553at 190.701 kb on - strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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188,365 + GFF4550 0.75 +0.1
188,443 + GFF4550 0.80 -0.8
188,443 + GFF4550 0.80 -0.3
188,443 + GFF4550 0.80 -0.8
188,443 + GFF4550 0.80 +0.4
188,443 + GFF4550 0.80 -1.8
188,444 - GFF4550 0.80 +0.1
188,444 - GFF4550 0.80 +1.5
188,444 - GFF4550 0.80 +0.0
188,444 - GFF4550 0.80 -0.1
188,491 + GFF4550 0.83 -0.1
188,491 + GFF4550 0.83 +0.2
188,491 + GFF4550 0.83 +0.5
188,492 - GFF4550 0.83 -0.3
188,677 + -0.8
188,678 - -0.2
188,928 + GFF4551 0.25 +1.5
188,928 + GFF4551 0.25 -0.4
188,928 + GFF4551 0.25 -0.1
188,929 - GFF4551 0.25 +0.5
188,929 - GFF4551 0.25 +0.2
188,929 - GFF4551 0.25 -0.9
188,929 - GFF4551 0.25 +0.1
188,929 - GFF4551 0.25 +2.3
188,929 - GFF4551 0.25 -0.3
188,940 + GFF4551 0.27 -0.3
188,940 + GFF4551 0.27 +0.2
188,940 + GFF4551 0.27 -1.3
188,940 + GFF4551 0.27 +0.5
188,940 + GFF4551 0.27 -0.1
188,940 + GFF4551 0.27 -0.1
188,941 - GFF4551 0.28 -0.0
188,941 - GFF4551 0.28 -0.2
188,941 - GFF4551 0.28 -0.9
189,392 + -0.2
189,392 + +0.3
189,392 + -0.2
189,392 + +0.3
189,392 + -0.4
189,392 + +0.2
189,392 + -0.1
189,393 - -0.7
189,393 - -1.0
189,393 - +0.6
189,393 - -0.9
189,393 - +0.8
189,393 - -1.0
189,509 + GFF4552 0.23 -0.1
189,533 + GFF4552 0.27 -0.4
189,533 + GFF4552 0.27 -0.4
189,534 - GFF4552 0.27 -0.6
189,534 - GFF4552 0.27 -0.6
189,534 - GFF4552 0.27 +0.1
189,534 - GFF4552 0.27 -1.2
189,534 - GFF4552 0.27 -0.0
189,534 - GFF4552 0.27 +0.1
189,534 - GFF4552 0.27 -0.4
189,534 - GFF4552 0.27 -0.3
189,534 - GFF4552 0.27 -0.2
189,890 + GFF4552 0.84 +0.4
189,890 + GFF4552 0.84 -0.5
189,890 + GFF4552 0.84 -1.1
189,890 + GFF4552 0.84 -0.6
189,890 + GFF4552 0.84 -1.2
189,890 + GFF4552 0.84 +0.2
189,890 + GFF4552 0.84 +0.1
189,890 + GFF4552 0.84 +0.3
189,890 + GFF4552 0.84 -0.7
189,890 + GFF4552 0.84 -0.1
189,890 + GFF4552 0.84 -1.3
189,891 - GFF4552 0.84 -1.6
189,891 - GFF4552 0.84 -0.3
189,891 - GFF4552 0.84 -0.0
189,891 - GFF4552 0.84 +0.5
189,891 - GFF4552 0.84 -0.8
189,941 + +0.1
189,941 + -0.2
189,941 + -0.6
189,941 + -0.8
189,941 + -0.5
189,942 - +0.0
189,942 - -2.0
189,942 - -0.7
189,942 - -1.4
190,358 + GFF4553 0.32 -0.2
190,358 + GFF4553 0.32 +0.1
190,358 + GFF4553 0.32 +0.3
190,359 - GFF4553 0.32 +0.1
190,406 + GFF4553 0.37 +0.0
190,407 - GFF4553 0.37 -0.2
190,407 - GFF4553 0.37 -1.5
190,407 - GFF4553 0.37 +0.2
190,407 - GFF4553 0.37 -0.1
190,493 + GFF4553 0.45 +2.7
190,494 - GFF4553 0.46 +0.4
190,494 - GFF4553 0.46 -0.0
190,700 + GFF4553 0.66 -0.6
190,700 + GFF4553 0.66 +0.7
190,700 + GFF4553 0.66 +0.4
190,700 + GFF4553 0.66 +0.8
190,700 + GFF4553 0.66 -1.1
190,700 + GFF4553 0.66 -1.1
190,700 + GFF4553 0.66 +0.3
190,700 + GFF4553 0.66 -0.4
190,700 + GFF4553 0.66 +0.2
190,701 - GFF4553 0.66 +0.4
190,701 - GFF4553 0.66 +0.3
190,701 - GFF4553 0.66 -1.3
190,701 - GFF4553 0.66 +1.0
190,701 - GFF4553 0.66 -0.6
190,701 - GFF4553 0.66 +0.8
190,701 - GFF4553 0.66 +0.2
190,701 - GFF4553 0.66 +0.1
190,701 - GFF4553 0.66 -0.9
190,850 + GFF4553 0.82 -1.5
190,850 + GFF4553 0.82 -0.6
190,850 + GFF4553 0.82 +1.4
190,850 + GFF4553 0.82 +0.2
190,850 + GFF4553 0.82 +0.5
190,850 + GFF4553 0.82 -0.6
190,850 + GFF4553 0.82 +0.5
190,850 + GFF4553 0.82 -1.3
190,850 + GFF4553 0.82 +0.2
190,850 + GFF4553 0.82 -0.7
190,850 + GFF4553 0.82 -0.2
190,850 + GFF4553 0.82 -1.2
190,850 + GFF4553 0.82 -1.1
190,850 + GFF4553 0.82 +0.7
190,850 + GFF4553 0.82 -0.0
190,850 + GFF4553 0.82 -1.1
190,850 + GFF4553 0.82 -1.9
190,850 + GFF4553 0.82 -0.4
190,850 + GFF4553 0.82 +1.1
190,850 + GFF4553 0.82 -0.5
190,850 + GFF4553 0.82 -0.1
190,850 + GFF4553 0.82 +0.8
190,850 + GFF4553 0.82 +1.2
190,850 + GFF4553 0.82 -0.2
190,850 + GFF4553 0.82 -0.3
190,850 + GFF4553 0.82 +0.4
190,851 - GFF4553 0.82 -0.3
190,851 - GFF4553 0.82 +0.5
190,851 - GFF4553 0.82 -0.4
190,851 - GFF4553 0.82 +1.3
190,851 - GFF4553 0.82 +1.2
190,851 - GFF4553 0.82 +0.1
190,851 - GFF4553 0.82 -0.1
190,851 - GFF4553 0.82 -0.3
190,851 - GFF4553 0.82 -1.5
190,851 - GFF4553 0.82 +0.8
190,851 - GFF4553 0.82 +0.0
190,851 - GFF4553 0.82 -0.9
190,851 - GFF4553 0.82 -1.4
190,851 - GFF4553 0.82 -0.1
190,851 - GFF4553 0.82 +0.1
190,851 - GFF4553 0.82 -1.6
190,851 - GFF4553 0.82 -0.8
190,851 - GFF4553 0.82 +0.7
190,851 - GFF4553 0.82 +0.7
190,851 - GFF4553 0.82 +0.2
190,851 - GFF4553 0.82 +0.1
190,851 - GFF4553 0.82 +0.5
190,851 - GFF4553 0.82 -0.4
190,851 - GFF4553 0.82 +0.7
190,851 - GFF4553 0.82 -0.6
190,851 - GFF4553 0.82 -0.1
190,851 - GFF4553 0.82 -1.1
190,851 - GFF4553 0.82 -0.4
190,851 - GFF4553 0.82 -0.3
190,851 - GFF4553 0.82 +1.6
190,851 - GFF4553 0.82 -0.3
190,851 - GFF4553 0.82 -0.0
190,851 - GFF4553 0.82 -0.6
190,851 - GFF4553 0.82 +0.7

Or see this region's nucleotide sequence