Strain Fitness in Variovorax sp. SCN45 around GFF4413

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4412 and GFF4413 overlap by 4 nucleotidesGFF4413 and GFF4414 overlap by 4 nucleotides GFF4412 - Coupling protein VirD4, ATPase required for T-DNA transfer, at 48,447 to 50,480 GFF4412 GFF4413 - CopG domain-containing protein, at 50,477 to 50,953 GFF4413 GFF4414 - Conjugative transfer protein TrbB, at 50,950 to 52,014 GFF4414 Position (kb) 50 51Strain fitness (log2 ratio) -2 -1 0 1at 49.542 kb on + strand, within GFF4412at 49.542 kb on + strand, within GFF4412at 49.542 kb on + strand, within GFF4412at 49.542 kb on + strand, within GFF4412at 49.542 kb on + strand, within GFF4412at 49.542 kb on + strand, within GFF4412at 49.543 kb on - strand, within GFF4412at 49.543 kb on - strand, within GFF4412at 49.543 kb on - strand, within GFF4412at 49.543 kb on - strand, within GFF4412at 49.549 kb on + strand, within GFF4412at 49.549 kb on + strand, within GFF4412at 49.549 kb on + strand, within GFF4412at 49.549 kb on + strand, within GFF4412at 49.549 kb on + strand, within GFF4412at 49.549 kb on + strand, within GFF4412at 49.549 kb on + strand, within GFF4412at 49.550 kb on - strand, within GFF4412at 49.550 kb on - strand, within GFF4412at 49.550 kb on - strand, within GFF4412at 49.550 kb on - strand, within GFF4412at 49.550 kb on - strand, within GFF4412at 49.550 kb on - strand, within GFF4412at 49.550 kb on - strand, within GFF4412at 49.550 kb on - strand, within GFF4412at 49.747 kb on - strand, within GFF4412at 49.800 kb on + strand, within GFF4412at 49.800 kb on + strand, within GFF4412at 49.800 kb on + strand, within GFF4412at 49.801 kb on - strand, within GFF4412at 49.801 kb on - strand, within GFF4412at 49.801 kb on - strand, within GFF4412at 49.801 kb on - strand, within GFF4412at 49.801 kb on - strand, within GFF4412at 49.801 kb on - strand, within GFF4412at 49.929 kb on + strand, within GFF4412at 49.929 kb on + strand, within GFF4412at 49.929 kb on + strand, within GFF4412at 49.929 kb on + strand, within GFF4412at 49.929 kb on + strand, within GFF4412at 49.929 kb on + strand, within GFF4412at 50.026 kb on + strand, within GFF4412at 50.026 kb on + strand, within GFF4412at 50.026 kb on + strand, within GFF4412at 50.026 kb on + strand, within GFF4412at 50.026 kb on + strand, within GFF4412at 50.026 kb on + strand, within GFF4412at 50.026 kb on + strand, within GFF4412at 50.026 kb on + strand, within GFF4412at 50.026 kb on + strand, within GFF4412at 50.026 kb on + strand, within GFF4412at 50.026 kb on + strand, within GFF4412at 50.027 kb on - strand, within GFF4412at 50.027 kb on - strand, within GFF4412at 50.027 kb on - strand, within GFF4412at 50.027 kb on - strand, within GFF4412at 50.027 kb on - strand, within GFF4412at 50.027 kb on - strand, within GFF4412at 50.027 kb on - strand, within GFF4412at 50.027 kb on - strand, within GFF4412at 50.027 kb on - strand, within GFF4412at 50.091 kb on + strand, within GFF4412at 50.091 kb on + strand, within GFF4412at 50.091 kb on + strand, within GFF4412at 50.092 kb on - strand, within GFF4412at 50.092 kb on - strand, within GFF4412at 50.092 kb on - strand, within GFF4412at 50.092 kb on - strand, within GFF4412at 50.094 kb on + strand, within GFF4412at 50.094 kb on + strand, within GFF4412at 50.094 kb on + strand, within GFF4412at 50.094 kb on + strand, within GFF4412at 50.166 kb on + strand, within GFF4412at 50.166 kb on + strand, within GFF4412at 50.167 kb on - strand, within GFF4412at 50.167 kb on - strand, within GFF4412at 50.311 kb on + strandat 50.311 kb on + strandat 50.311 kb on + strandat 50.311 kb on + strandat 50.312 kb on - strandat 50.312 kb on - strandat 50.312 kb on - strandat 50.312 kb on - strandat 50.328 kb on + strandat 50.328 kb on + strandat 50.328 kb on + strandat 50.328 kb on + strandat 50.328 kb on + strandat 50.328 kb on + strandat 50.329 kb on - strandat 50.329 kb on - strandat 50.329 kb on - strandat 50.476 kb on + strandat 50.476 kb on + strandat 50.476 kb on + strandat 50.476 kb on + strandat 50.476 kb on + strandat 50.476 kb on + strandat 50.476 kb on + strandat 50.476 kb on + strandat 50.476 kb on + strandat 50.476 kb on + strandat 50.476 kb on + strandat 50.476 kb on + strandat 50.477 kb on - strandat 50.477 kb on - strandat 50.477 kb on - strandat 50.477 kb on - strandat 50.477 kb on - strandat 50.477 kb on - strandat 50.477 kb on - strandat 50.477 kb on - strandat 50.477 kb on - strandat 50.477 kb on - strandat 50.477 kb on - strandat 50.477 kb on - strandat 50.498 kb on + strandat 50.499 kb on - strandat 50.515 kb on + strandat 50.515 kb on + strandat 50.686 kb on + strand, within GFF4413at 50.686 kb on + strand, within GFF4413at 50.686 kb on + strand, within GFF4413at 50.687 kb on - strand, within GFF4413at 50.687 kb on - strand, within GFF4413at 50.687 kb on - strand, within GFF4413at 50.687 kb on - strand, within GFF4413at 50.738 kb on + strand, within GFF4413at 50.741 kb on + strand, within GFF4413at 50.741 kb on + strand, within GFF4413at 50.741 kb on + strand, within GFF4413at 50.742 kb on - strand, within GFF4413at 50.742 kb on - strand, within GFF4413at 50.742 kb on - strand, within GFF4413at 50.742 kb on - strand, within GFF4413at 50.742 kb on - strand, within GFF4413at 50.742 kb on - strand, within GFF4413at 50.742 kb on - strand, within GFF4413at 50.742 kb on - strand, within GFF4413at 50.742 kb on - strand, within GFF4413at 50.742 kb on - strand, within GFF4413at 50.742 kb on - strand, within GFF4413at 50.742 kb on - strand, within GFF4413at 50.874 kb on + strand, within GFF4413at 50.874 kb on + strand, within GFF4413at 50.874 kb on + strand, within GFF4413at 50.874 kb on + strand, within GFF4413at 50.874 kb on + strand, within GFF4413at 50.874 kb on + strand, within GFF4413at 50.874 kb on + strand, within GFF4413at 50.874 kb on + strand, within GFF4413at 50.874 kb on + strand, within GFF4413at 50.875 kb on - strand, within GFF4413at 50.875 kb on - strand, within GFF4413at 50.875 kb on - strand, within GFF4413at 50.875 kb on - strand, within GFF4413at 50.875 kb on - strand, within GFF4413at 50.875 kb on - strand, within GFF4413at 50.875 kb on - strand, within GFF4413at 50.875 kb on - strand, within GFF4413at 51.069 kb on - strand, within GFF4414at 51.337 kb on + strand, within GFF4414at 51.337 kb on + strand, within GFF4414at 51.338 kb on - strand, within GFF4414at 51.338 kb on - strand, within GFF4414at 51.338 kb on - strand, within GFF4414at 51.474 kb on - strand, within GFF4414at 51.474 kb on - strand, within GFF4414at 51.474 kb on - strand, within GFF4414at 51.474 kb on - strand, within GFF4414at 51.889 kb on + strand, within GFF4414

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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49,542 + GFF4412 0.54 +0.1
49,542 + GFF4412 0.54 -0.1
49,542 + GFF4412 0.54 -1.2
49,542 + GFF4412 0.54 +1.7
49,542 + GFF4412 0.54 -0.7
49,542 + GFF4412 0.54 +0.5
49,543 - GFF4412 0.54 +0.6
49,543 - GFF4412 0.54 +0.4
49,543 - GFF4412 0.54 -0.5
49,543 - GFF4412 0.54 +0.7
49,549 + GFF4412 0.54 -0.1
49,549 + GFF4412 0.54 -0.3
49,549 + GFF4412 0.54 +0.5
49,549 + GFF4412 0.54 +0.9
49,549 + GFF4412 0.54 +0.2
49,549 + GFF4412 0.54 -0.9
49,549 + GFF4412 0.54 -0.7
49,550 - GFF4412 0.54 -0.2
49,550 - GFF4412 0.54 +0.1
49,550 - GFF4412 0.54 +0.1
49,550 - GFF4412 0.54 +0.2
49,550 - GFF4412 0.54 -0.9
49,550 - GFF4412 0.54 -0.0
49,550 - GFF4412 0.54 -0.4
49,550 - GFF4412 0.54 -0.4
49,747 - GFF4412 0.64 +0.1
49,800 + GFF4412 0.67 +1.3
49,800 + GFF4412 0.67 +0.3
49,800 + GFF4412 0.67 -0.2
49,801 - GFF4412 0.67 +0.2
49,801 - GFF4412 0.67 +0.1
49,801 - GFF4412 0.67 +1.0
49,801 - GFF4412 0.67 -0.2
49,801 - GFF4412 0.67 -0.5
49,801 - GFF4412 0.67 -0.8
49,929 + GFF4412 0.73 +0.3
49,929 + GFF4412 0.73 -1.2
49,929 + GFF4412 0.73 +0.7
49,929 + GFF4412 0.73 -0.8
49,929 + GFF4412 0.73 +0.3
49,929 + GFF4412 0.73 -0.6
50,026 + GFF4412 0.78 -0.6
50,026 + GFF4412 0.78 -0.0
50,026 + GFF4412 0.78 -0.4
50,026 + GFF4412 0.78 +0.0
50,026 + GFF4412 0.78 +1.3
50,026 + GFF4412 0.78 -2.2
50,026 + GFF4412 0.78 -0.2
50,026 + GFF4412 0.78 +0.0
50,026 + GFF4412 0.78 -1.4
50,026 + GFF4412 0.78 -1.6
50,026 + GFF4412 0.78 -0.9
50,027 - GFF4412 0.78 -2.3
50,027 - GFF4412 0.78 -1.9
50,027 - GFF4412 0.78 -0.2
50,027 - GFF4412 0.78 +0.5
50,027 - GFF4412 0.78 -1.8
50,027 - GFF4412 0.78 -2.1
50,027 - GFF4412 0.78 -1.3
50,027 - GFF4412 0.78 +0.9
50,027 - GFF4412 0.78 +0.9
50,091 + GFF4412 0.81 -0.3
50,091 + GFF4412 0.81 +0.3
50,091 + GFF4412 0.81 -1.1
50,092 - GFF4412 0.81 -0.9
50,092 - GFF4412 0.81 -0.2
50,092 - GFF4412 0.81 -0.8
50,092 - GFF4412 0.81 +0.5
50,094 + GFF4412 0.81 +0.1
50,094 + GFF4412 0.81 +0.4
50,094 + GFF4412 0.81 -0.5
50,094 + GFF4412 0.81 -0.2
50,166 + GFF4412 0.85 -0.1
50,166 + GFF4412 0.85 -0.7
50,167 - GFF4412 0.85 -0.9
50,167 - GFF4412 0.85 -0.4
50,311 + -1.3
50,311 + -0.8
50,311 + -2.3
50,311 + -0.2
50,312 - +0.2
50,312 - +0.5
50,312 - +0.7
50,312 - +0.4
50,328 + -0.4
50,328 + +1.3
50,328 + -0.1
50,328 + -0.4
50,328 + -0.6
50,328 + +0.7
50,329 - -0.9
50,329 - +0.1
50,329 - -1.3
50,476 + -0.4
50,476 + -0.4
50,476 + -1.7
50,476 + +0.1
50,476 + +1.0
50,476 + -0.8
50,476 + -1.6
50,476 + +0.8
50,476 + -1.1
50,476 + +0.4
50,476 + +1.5
50,476 + +1.1
50,477 - -0.5
50,477 - +0.7
50,477 - -1.0
50,477 - -1.5
50,477 - +0.7
50,477 - +0.1
50,477 - -0.6
50,477 - +0.0
50,477 - +0.2
50,477 - +0.6
50,477 - -0.3
50,477 - -1.1
50,498 + -1.3
50,499 - +0.1
50,515 + -0.7
50,515 + +0.0
50,686 + GFF4413 0.44 -0.2
50,686 + GFF4413 0.44 +0.1
50,686 + GFF4413 0.44 +0.2
50,687 - GFF4413 0.44 -0.6
50,687 - GFF4413 0.44 -0.3
50,687 - GFF4413 0.44 -0.1
50,687 - GFF4413 0.44 -1.9
50,738 + GFF4413 0.55 -0.5
50,741 + GFF4413 0.55 -0.2
50,741 + GFF4413 0.55 +0.7
50,741 + GFF4413 0.55 -0.1
50,742 - GFF4413 0.56 +0.5
50,742 - GFF4413 0.56 +0.0
50,742 - GFF4413 0.56 -1.6
50,742 - GFF4413 0.56 -0.3
50,742 - GFF4413 0.56 -0.4
50,742 - GFF4413 0.56 +0.4
50,742 - GFF4413 0.56 -0.5
50,742 - GFF4413 0.56 -0.2
50,742 - GFF4413 0.56 -0.9
50,742 - GFF4413 0.56 -0.0
50,742 - GFF4413 0.56 -0.5
50,742 - GFF4413 0.56 -0.6
50,874 + GFF4413 0.83 +0.9
50,874 + GFF4413 0.83 -0.8
50,874 + GFF4413 0.83 -0.3
50,874 + GFF4413 0.83 -0.4
50,874 + GFF4413 0.83 -2.1
50,874 + GFF4413 0.83 -1.6
50,874 + GFF4413 0.83 -1.1
50,874 + GFF4413 0.83 -1.0
50,874 + GFF4413 0.83 -0.8
50,875 - GFF4413 0.83 -0.3
50,875 - GFF4413 0.83 -1.3
50,875 - GFF4413 0.83 -0.4
50,875 - GFF4413 0.83 +0.3
50,875 - GFF4413 0.83 -0.0
50,875 - GFF4413 0.83 +0.6
50,875 - GFF4413 0.83 -1.8
50,875 - GFF4413 0.83 -0.1
51,069 - GFF4414 0.11 -0.0
51,337 + GFF4414 0.36 +0.7
51,337 + GFF4414 0.36 +0.4
51,338 - GFF4414 0.36 +0.2
51,338 - GFF4414 0.36 +1.0
51,338 - GFF4414 0.36 +1.7
51,474 - GFF4414 0.49 -0.7
51,474 - GFF4414 0.49 +0.7
51,474 - GFF4414 0.49 -0.5
51,474 - GFF4414 0.49 +0.2
51,889 + GFF4414 0.88 -0.8

Or see this region's nucleotide sequence