Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4095 and GFF4096 are separated by 403 nucleotides GFF4096 and GFF4097 are separated by 3 nucleotides GFF4097 and GFF4098 are separated by 0 nucleotides
GFF4095 - no description, at 306,237 to 306,881
GFF4095
GFF4096 - no description, at 307,285 to 308,307
GFF4096
GFF4097 - hypothetical protein, at 308,311 to 308,937
GFF4097
GFF4098 - hypothetical protein, at 308,938 to 309,126
GFF4098
Position (kb) 307
308
309 Strain fitness (log2 ratio) -2
-1
0
1
2 at 306.616 kb on + strand, within GFF4095 at 306.616 kb on + strand, within GFF4095 at 306.661 kb on + strand, within GFF4095 at 306.661 kb on + strand, within GFF4095 at 306.662 kb on - strand, within GFF4095 at 306.662 kb on - strand, within GFF4095 at 306.662 kb on - strand, within GFF4095 at 306.662 kb on - strand, within GFF4095 at 306.885 kb on - strand at 306.891 kb on + strand at 306.891 kb on + strand at 306.891 kb on + strand at 306.892 kb on - strand at 306.892 kb on - strand at 306.894 kb on - strand at 306.895 kb on + strand at 306.905 kb on - strand at 306.985 kb on + strand at 306.986 kb on - strand at 306.986 kb on - strand at 306.986 kb on - strand at 306.986 kb on - strand at 306.986 kb on - strand at 307.014 kb on + strand at 307.014 kb on + strand at 307.014 kb on + strand at 307.014 kb on + strand at 307.014 kb on + strand at 307.014 kb on + strand at 307.015 kb on - strand at 307.015 kb on - strand at 307.015 kb on - strand at 307.015 kb on - strand at 307.020 kb on + strand at 307.020 kb on + strand at 307.021 kb on - strand at 307.021 kb on - strand at 307.021 kb on - strand at 307.105 kb on + strand at 307.106 kb on - strand at 307.135 kb on - strand at 307.312 kb on + strand at 307.312 kb on + strand at 307.313 kb on - strand at 307.313 kb on - strand at 307.313 kb on - strand at 307.511 kb on - strand, within GFF4096 at 307.511 kb on - strand, within GFF4096 at 307.511 kb on - strand, within GFF4096 at 307.609 kb on + strand, within GFF4096 at 307.610 kb on - strand, within GFF4096 at 307.610 kb on - strand, within GFF4096 at 307.914 kb on - strand, within GFF4096 at 307.936 kb on + strand, within GFF4096 at 307.936 kb on + strand, within GFF4096 at 307.937 kb on - strand, within GFF4096 at 307.937 kb on - strand, within GFF4096 at 307.937 kb on - strand, within GFF4096 at 307.937 kb on - strand, within GFF4096 at 307.937 kb on - strand, within GFF4096 at 307.937 kb on - strand, within GFF4096 at 308.061 kb on + strand, within GFF4096 at 308.129 kb on - strand, within GFF4096 at 308.129 kb on - strand, within GFF4096 at 308.881 kb on + strand at 308.882 kb on - strand at 308.882 kb on - strand at 309.048 kb on - strand, within GFF4098 at 309.048 kb on - strand, within GFF4098 at 309.048 kb on - strand, within GFF4098 at 309.083 kb on + strand, within GFF4098 at 309.084 kb on - strand, within GFF4098 at 309.256 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 306,616 + GFF4095 0.59 -0.4 306,616 + GFF4095 0.59 -0.5 306,661 + GFF4095 0.66 +1.0 306,661 + GFF4095 0.66 +0.4 306,662 - GFF4095 0.66 +0.5 306,662 - GFF4095 0.66 -0.7 306,662 - GFF4095 0.66 +1.6 306,662 - GFF4095 0.66 -0.7 306,885 - -0.1 306,891 + -1.2 306,891 + -1.2 306,891 + +1.4 306,892 - -1.1 306,892 - -0.7 306,894 - -0.8 306,895 + +0.0 306,905 - +0.8 306,985 + -0.7 306,986 - -1.4 306,986 - -0.1 306,986 - -0.9 306,986 - +0.4 306,986 - -0.2 307,014 + +0.4 307,014 + +0.7 307,014 + +1.3 307,014 + -0.9 307,014 + -1.9 307,014 + -1.6 307,015 - +0.6 307,015 - -0.1 307,015 - +0.9 307,015 - +1.0 307,020 + -0.2 307,020 + -0.2 307,021 - -2.5 307,021 - -0.4 307,021 - +0.1 307,105 + +1.0 307,106 - -0.2 307,135 - +0.4 307,312 + +0.0 307,312 + +0.4 307,313 - +0.3 307,313 - +0.5 307,313 - +0.6 307,511 - GFF4096 0.22 +0.3 307,511 - GFF4096 0.22 -0.8 307,511 - GFF4096 0.22 +0.0 307,609 + GFF4096 0.32 -0.0 307,610 - GFF4096 0.32 +0.3 307,610 - GFF4096 0.32 +0.2 307,914 - GFF4096 0.61 -0.7 307,936 + GFF4096 0.64 -0.5 307,936 + GFF4096 0.64 +0.6 307,937 - GFF4096 0.64 +0.3 307,937 - GFF4096 0.64 +0.0 307,937 - GFF4096 0.64 -0.3 307,937 - GFF4096 0.64 +1.9 307,937 - GFF4096 0.64 +2.1 307,937 - GFF4096 0.64 -2.0 308,061 + GFF4096 0.76 +1.6 308,129 - GFF4096 0.83 -1.3 308,129 - GFF4096 0.83 +0.2 308,881 + -1.0 308,882 - +0.3 308,882 - -0.3 309,048 - GFF4098 0.58 -0.5 309,048 - GFF4098 0.58 -1.8 309,048 - GFF4098 0.58 +0.1 309,083 + GFF4098 0.77 -0.6 309,084 - GFF4098 0.77 -0.8 309,256 + +0.0
Or see this region's nucleotide sequence