Strain Fitness in Variovorax sp. SCN45 around GFF3843

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3842 and GFF3843 are separated by 6 nucleotidesGFF3843 and GFF3844 are separated by 108 nucleotides GFF3842 - Uncharacterized protein EC-HemY in Proteobacteria (unrelated to HemY-type PPO in GramPositives), at 40,304 to 41,587 GFF3842 GFF3843 - Uncharacterized MFS-type transporter, at 41,594 to 43,162 GFF3843 GFF3844 - Transcriptional regulator, LysR family, at 43,271 to 44,137 GFF3844 Position (kb) 41 42 43 44Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 41.388 kb on - strand, within GFF3842at 41.388 kb on - strand, within GFF3842at 41.388 kb on - strand, within GFF3842at 41.388 kb on - strand, within GFF3842at 41.484 kb on - strandat 41.484 kb on - strandat 41.947 kb on + strand, within GFF3843at 41.947 kb on + strand, within GFF3843at 41.947 kb on + strand, within GFF3843at 41.947 kb on + strand, within GFF3843at 41.948 kb on - strand, within GFF3843at 41.948 kb on - strand, within GFF3843at 41.948 kb on - strand, within GFF3843at 42.219 kb on - strand, within GFF3843at 42.219 kb on - strand, within GFF3843at 42.219 kb on - strand, within GFF3843at 42.219 kb on - strand, within GFF3843at 42.237 kb on + strand, within GFF3843at 42.238 kb on - strand, within GFF3843at 42.294 kb on + strand, within GFF3843at 42.294 kb on + strand, within GFF3843at 42.294 kb on + strand, within GFF3843at 42.295 kb on - strand, within GFF3843at 42.295 kb on - strand, within GFF3843at 42.295 kb on - strand, within GFF3843at 42.295 kb on - strand, within GFF3843at 42.295 kb on - strand, within GFF3843at 42.295 kb on - strand, within GFF3843at 42.295 kb on - strand, within GFF3843at 42.306 kb on + strand, within GFF3843at 42.306 kb on + strand, within GFF3843at 42.306 kb on + strand, within GFF3843at 42.306 kb on + strand, within GFF3843at 42.307 kb on - strand, within GFF3843at 42.307 kb on - strand, within GFF3843at 42.307 kb on - strand, within GFF3843at 42.307 kb on - strand, within GFF3843at 42.307 kb on - strand, within GFF3843at 42.394 kb on - strand, within GFF3843at 42.519 kb on + strand, within GFF3843at 42.519 kb on + strand, within GFF3843at 42.519 kb on + strand, within GFF3843at 42.519 kb on + strand, within GFF3843at 42.519 kb on + strand, within GFF3843at 42.519 kb on + strand, within GFF3843at 42.520 kb on - strand, within GFF3843at 42.520 kb on - strand, within GFF3843at 42.520 kb on - strand, within GFF3843at 42.520 kb on - strand, within GFF3843at 42.520 kb on - strand, within GFF3843at 42.520 kb on - strand, within GFF3843at 42.520 kb on - strand, within GFF3843at 42.520 kb on - strand, within GFF3843at 42.520 kb on - strand, within GFF3843at 42.946 kb on - strand, within GFF3843at 42.999 kb on + strand, within GFF3843at 42.999 kb on + strand, within GFF3843at 42.999 kb on + strand, within GFF3843at 42.999 kb on + strand, within GFF3843at 42.999 kb on + strand, within GFF3843at 42.999 kb on + strand, within GFF3843at 42.999 kb on + strand, within GFF3843at 42.999 kb on + strand, within GFF3843at 42.999 kb on + strand, within GFF3843at 42.999 kb on - strand, within GFF3843at 43.000 kb on - strand, within GFF3843at 43.000 kb on - strand, within GFF3843at 43.000 kb on - strand, within GFF3843at 43.000 kb on - strand, within GFF3843at 43.000 kb on - strand, within GFF3843at 43.000 kb on - strand, within GFF3843at 43.000 kb on - strand, within GFF3843at 43.000 kb on - strand, within GFF3843at 43.246 kb on + strandat 43.260 kb on + strandat 43.475 kb on + strand, within GFF3844at 43.820 kb on + strand, within GFF3844at 44.007 kb on - strand, within GFF3844at 44.007 kb on - strand, within GFF3844at 44.007 kb on - strand, within GFF3844at 44.124 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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41,388 - GFF3842 0.84 -0.8
41,388 - GFF3842 0.84 -1.7
41,388 - GFF3842 0.84 +0.3
41,388 - GFF3842 0.84 -0.6
41,484 - -1.8
41,484 - -0.7
41,947 + GFF3843 0.22 -0.3
41,947 + GFF3843 0.22 -2.0
41,947 + GFF3843 0.22 -1.1
41,947 + GFF3843 0.22 -0.1
41,948 - GFF3843 0.23 +0.6
41,948 - GFF3843 0.23 +0.8
41,948 - GFF3843 0.23 -0.5
42,219 - GFF3843 0.40 -1.0
42,219 - GFF3843 0.40 +0.4
42,219 - GFF3843 0.40 +0.1
42,219 - GFF3843 0.40 +0.1
42,237 + GFF3843 0.41 -0.2
42,238 - GFF3843 0.41 -1.2
42,294 + GFF3843 0.45 -1.1
42,294 + GFF3843 0.45 +0.5
42,294 + GFF3843 0.45 -0.9
42,295 - GFF3843 0.45 -0.9
42,295 - GFF3843 0.45 -1.6
42,295 - GFF3843 0.45 -0.3
42,295 - GFF3843 0.45 +0.4
42,295 - GFF3843 0.45 -1.0
42,295 - GFF3843 0.45 -1.7
42,295 - GFF3843 0.45 +0.1
42,306 + GFF3843 0.45 -0.4
42,306 + GFF3843 0.45 -0.1
42,306 + GFF3843 0.45 -0.4
42,306 + GFF3843 0.45 -1.3
42,307 - GFF3843 0.45 +0.3
42,307 - GFF3843 0.45 -0.3
42,307 - GFF3843 0.45 -0.0
42,307 - GFF3843 0.45 -0.7
42,307 - GFF3843 0.45 +0.3
42,394 - GFF3843 0.51 -0.3
42,519 + GFF3843 0.59 +0.6
42,519 + GFF3843 0.59 -0.8
42,519 + GFF3843 0.59 +0.1
42,519 + GFF3843 0.59 +1.1
42,519 + GFF3843 0.59 +0.2
42,519 + GFF3843 0.59 -0.6
42,520 - GFF3843 0.59 +0.2
42,520 - GFF3843 0.59 +0.5
42,520 - GFF3843 0.59 -0.1
42,520 - GFF3843 0.59 +0.1
42,520 - GFF3843 0.59 -0.7
42,520 - GFF3843 0.59 +2.6
42,520 - GFF3843 0.59 -0.4
42,520 - GFF3843 0.59 +0.0
42,520 - GFF3843 0.59 -0.1
42,946 - GFF3843 0.86 +0.8
42,999 + GFF3843 0.90 +1.0
42,999 + GFF3843 0.90 +0.5
42,999 + GFF3843 0.90 -2.9
42,999 + GFF3843 0.90 +0.8
42,999 + GFF3843 0.90 +0.9
42,999 + GFF3843 0.90 -0.6
42,999 + GFF3843 0.90 -0.1
42,999 + GFF3843 0.90 -0.1
42,999 + GFF3843 0.90 -0.6
42,999 - GFF3843 0.90 -1.4
43,000 - GFF3843 0.90 +0.5
43,000 - GFF3843 0.90 +0.6
43,000 - GFF3843 0.90 -0.2
43,000 - GFF3843 0.90 +0.0
43,000 - GFF3843 0.90 +0.2
43,000 - GFF3843 0.90 +0.3
43,000 - GFF3843 0.90 -0.4
43,000 - GFF3843 0.90 -0.2
43,246 + -0.1
43,260 + +0.0
43,475 + GFF3844 0.24 -1.7
43,820 + GFF3844 0.63 -0.6
44,007 - GFF3844 0.85 +0.1
44,007 - GFF3844 0.85 -0.2
44,007 - GFF3844 0.85 +1.1
44,124 - -1.1

Or see this region's nucleotide sequence