Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3831 and GFF3832 are separated by 48 nucleotides GFF3832 and GFF3833 are separated by 16 nucleotides GFF3833 and GFF3834 are separated by 168 nucleotides GFF3834 and GFF3835 overlap by 4 nucleotides
GFF3831 - Acetyltransferase, GNAT family, at 22,073 to 22,597
GFF3831
GFF3832 - Transcriptional regulator KPN_02830, LysR family, at 22,646 to 23,569
GFF3832
GFF3833 - FIG01056426: hypothetical protein, at 23,586 to 24,842
GFF3833
GFF3834 - hypothetical protein, at 25,011 to 25,556
GFF3834
GFF3835 - ADP-ribosylglycohydrolase family protein, at 25,553 to 25,954
GFF3835
Position (kb) 23
24
25 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 24.019 kb on + strand, within GFF3833 at 24.020 kb on - strand, within GFF3833 at 24.020 kb on - strand, within GFF3833 at 24.020 kb on - strand, within GFF3833 at 24.020 kb on - strand, within GFF3833 at 24.088 kb on + strand, within GFF3833 at 24.089 kb on - strand, within GFF3833 at 24.089 kb on - strand, within GFF3833 at 24.089 kb on - strand, within GFF3833 at 24.089 kb on - strand, within GFF3833 at 24.094 kb on + strand, within GFF3833 at 24.094 kb on + strand, within GFF3833 at 24.094 kb on + strand, within GFF3833 at 24.094 kb on + strand, within GFF3833 at 24.095 kb on - strand, within GFF3833 at 24.095 kb on - strand, within GFF3833 at 24.095 kb on - strand, within GFF3833 at 24.095 kb on - strand, within GFF3833 at 24.095 kb on - strand, within GFF3833 at 24.095 kb on - strand, within GFF3833 at 24.358 kb on + strand, within GFF3833 at 24.359 kb on - strand, within GFF3833 at 24.359 kb on - strand, within GFF3833 at 24.716 kb on + strand, within GFF3833 at 24.947 kb on + strand at 24.947 kb on + strand at 24.948 kb on - strand at 24.948 kb on - strand at 25.012 kb on + strand at 25.013 kb on - strand at 25.018 kb on + strand at 25.018 kb on + strand at 25.018 kb on + strand at 25.019 kb on - strand at 25.019 kb on - strand at 25.019 kb on - strand at 25.019 kb on - strand at 25.380 kb on - strand, within GFF3834 at 25.468 kb on + strand, within GFF3834 at 25.688 kb on + strand, within GFF3835 at 25.688 kb on + strand, within GFF3835 at 25.689 kb on - strand, within GFF3835 at 25.689 kb on - strand, within GFF3835 at 25.689 kb on - strand, within GFF3835
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 24,019 + GFF3833 0.34 -0.3 24,020 - GFF3833 0.35 -0.1 24,020 - GFF3833 0.35 -0.5 24,020 - GFF3833 0.35 -1.1 24,020 - GFF3833 0.35 +0.3 24,088 + GFF3833 0.40 +0.6 24,089 - GFF3833 0.40 -0.3 24,089 - GFF3833 0.40 +0.6 24,089 - GFF3833 0.40 +0.5 24,089 - GFF3833 0.40 +0.3 24,094 + GFF3833 0.40 -0.6 24,094 + GFF3833 0.40 -0.1 24,094 + GFF3833 0.40 +0.9 24,094 + GFF3833 0.40 -0.4 24,095 - GFF3833 0.40 +0.6 24,095 - GFF3833 0.40 +0.5 24,095 - GFF3833 0.40 -1.1 24,095 - GFF3833 0.40 +0.7 24,095 - GFF3833 0.40 +0.2 24,095 - GFF3833 0.40 +1.6 24,358 + GFF3833 0.61 -0.2 24,359 - GFF3833 0.61 -0.3 24,359 - GFF3833 0.61 +0.4 24,716 + GFF3833 0.90 +0.0 24,947 + +0.2 24,947 + -0.2 24,948 - +0.0 24,948 - +0.0 25,012 + +3.0 25,013 - -0.5 25,018 + -0.5 25,018 + -1.5 25,018 + -2.1 25,019 - +0.8 25,019 - -0.1 25,019 - +0.0 25,019 - -1.0 25,380 - GFF3834 0.68 -0.7 25,468 + GFF3834 0.84 -0.2 25,688 + GFF3835 0.34 -0.9 25,688 + GFF3835 0.34 -2.4 25,689 - GFF3835 0.34 +0.8 25,689 - GFF3835 0.34 +1.0 25,689 - GFF3835 0.34 +0.5
Or see this region's nucleotide sequence