Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3791 and GFF3792 are separated by 57 nucleotides GFF3792 and GFF3793 are separated by 138 nucleotides GFF3793 and GFF3794 are separated by 17 nucleotides
GFF3791 - Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), at 287,955 to 289,289
GFF3791
GFF3792 - no description, at 289,347 to 289,751
GFF3792
GFF3793 - no description, at 289,890 to 290,471
GFF3793
GFF3794 - hypothetical protein, at 290,489 to 291,877
GFF3794
Position (kb) 289
290
291 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 288.915 kb on + strand, within GFF3791 at 288.921 kb on + strand, within GFF3791 at 288.921 kb on + strand, within GFF3791 at 288.921 kb on + strand, within GFF3791 at 288.921 kb on + strand, within GFF3791 at 289.140 kb on + strand, within GFF3791 at 289.218 kb on + strand at 289.218 kb on + strand at 289.218 kb on + strand at 289.219 kb on - strand at 289.219 kb on - strand at 289.219 kb on - strand at 289.219 kb on - strand at 289.219 kb on - strand at 289.384 kb on + strand at 289.385 kb on - strand at 289.558 kb on + strand, within GFF3792 at 289.558 kb on + strand, within GFF3792 at 289.558 kb on + strand, within GFF3792 at 289.558 kb on + strand, within GFF3792 at 289.558 kb on + strand, within GFF3792 at 289.558 kb on + strand, within GFF3792 at 289.558 kb on + strand, within GFF3792 at 289.558 kb on + strand, within GFF3792 at 289.558 kb on + strand, within GFF3792 at 289.559 kb on - strand, within GFF3792 at 289.559 kb on - strand, within GFF3792 at 289.559 kb on - strand, within GFF3792 at 289.559 kb on - strand, within GFF3792 at 289.559 kb on - strand, within GFF3792 at 289.625 kb on - strand, within GFF3792 at 289.625 kb on - strand, within GFF3792 at 289.625 kb on - strand, within GFF3792 at 289.810 kb on + strand at 290.112 kb on + strand, within GFF3793 at 290.115 kb on + strand, within GFF3793 at 290.115 kb on + strand, within GFF3793 at 290.116 kb on - strand, within GFF3793 at 290.116 kb on - strand, within GFF3793 at 290.116 kb on - strand, within GFF3793 at 290.154 kb on + strand, within GFF3793 at 290.154 kb on + strand, within GFF3793 at 290.154 kb on + strand, within GFF3793 at 290.155 kb on - strand, within GFF3793 at 290.652 kb on - strand, within GFF3794 at 290.652 kb on - strand, within GFF3794 at 290.717 kb on + strand, within GFF3794 at 290.718 kb on - strand, within GFF3794 at 290.718 kb on - strand, within GFF3794 at 290.729 kb on + strand, within GFF3794 at 290.729 kb on + strand, within GFF3794 at 290.729 kb on + strand, within GFF3794 at 290.729 kb on + strand, within GFF3794 at 290.730 kb on - strand, within GFF3794 at 290.730 kb on - strand, within GFF3794 at 290.780 kb on + strand, within GFF3794 at 290.781 kb on - strand, within GFF3794 at 290.781 kb on - strand, within GFF3794 at 290.781 kb on - strand, within GFF3794 at 290.945 kb on + strand, within GFF3794 at 290.946 kb on - strand, within GFF3794 at 291.008 kb on + strand, within GFF3794 at 291.008 kb on + strand, within GFF3794 at 291.008 kb on + strand, within GFF3794 at 291.164 kb on + strand, within GFF3794 at 291.209 kb on + strand, within GFF3794 at 291.210 kb on - strand, within GFF3794 at 291.210 kb on - strand, within GFF3794 at 291.210 kb on - strand, within GFF3794 at 291.210 kb on - strand, within GFF3794
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 288,915 + GFF3791 0.72 -0.1 288,921 + GFF3791 0.72 -1.4 288,921 + GFF3791 0.72 -1.9 288,921 + GFF3791 0.72 +0.7 288,921 + GFF3791 0.72 -0.3 289,140 + GFF3791 0.89 -1.5 289,218 + -0.4 289,218 + -0.3 289,218 + -0.3 289,219 - -0.3 289,219 - -0.1 289,219 - -0.5 289,219 - -0.1 289,219 - -0.7 289,384 + -0.3 289,385 - +0.4 289,558 + GFF3792 0.52 -0.5 289,558 + GFF3792 0.52 -0.2 289,558 + GFF3792 0.52 +0.1 289,558 + GFF3792 0.52 -1.7 289,558 + GFF3792 0.52 +0.3 289,558 + GFF3792 0.52 +0.5 289,558 + GFF3792 0.52 -0.8 289,558 + GFF3792 0.52 -0.4 289,558 + GFF3792 0.52 -2.0 289,559 - GFF3792 0.52 +0.0 289,559 - GFF3792 0.52 +1.4 289,559 - GFF3792 0.52 -2.0 289,559 - GFF3792 0.52 +1.5 289,559 - GFF3792 0.52 -1.0 289,625 - GFF3792 0.69 -0.2 289,625 - GFF3792 0.69 +1.2 289,625 - GFF3792 0.69 +0.2 289,810 + -0.4 290,112 + GFF3793 0.38 -0.4 290,115 + GFF3793 0.39 +1.1 290,115 + GFF3793 0.39 -0.0 290,116 - GFF3793 0.39 -0.1 290,116 - GFF3793 0.39 -1.8 290,116 - GFF3793 0.39 -1.4 290,154 + GFF3793 0.45 -3.3 290,154 + GFF3793 0.45 -0.4 290,154 + GFF3793 0.45 -0.2 290,155 - GFF3793 0.46 -0.8 290,652 - GFF3794 0.12 +0.1 290,652 - GFF3794 0.12 +0.2 290,717 + GFF3794 0.16 +0.2 290,718 - GFF3794 0.16 +0.7 290,718 - GFF3794 0.16 -0.9 290,729 + GFF3794 0.17 -0.8 290,729 + GFF3794 0.17 -0.2 290,729 + GFF3794 0.17 -0.9 290,729 + GFF3794 0.17 -0.4 290,730 - GFF3794 0.17 +0.4 290,730 - GFF3794 0.17 +0.4 290,780 + GFF3794 0.21 +0.8 290,781 - GFF3794 0.21 +0.1 290,781 - GFF3794 0.21 -1.1 290,781 - GFF3794 0.21 -0.5 290,945 + GFF3794 0.33 -0.9 290,946 - GFF3794 0.33 -0.4 291,008 + GFF3794 0.37 +0.2 291,008 + GFF3794 0.37 -0.0 291,008 + GFF3794 0.37 -0.6 291,164 + GFF3794 0.49 +0.2 291,209 + GFF3794 0.52 -0.3 291,210 - GFF3794 0.52 -0.7 291,210 - GFF3794 0.52 -0.6 291,210 - GFF3794 0.52 -0.0 291,210 - GFF3794 0.52 +1.5
Or see this region's nucleotide sequence