Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3574 and GFF3575 overlap by 4 nucleotides GFF3575 and GFF3576 overlap by 4 nucleotides GFF3576 and GFF3577 overlap by 4 nucleotides
GFF3574 - hypothetical protein, at 86,391 to 87,233
GFF3574
GFF3575 - no description, at 87,230 to 87,916
GFF3575
GFF3576 - no description, at 87,913 to 88,554
GFF3576
GFF3577 - Transcriptional regulator, LysR family, at 88,551 to 89,441
GFF3577
Position (kb) 87
88
89 Strain fitness (log2 ratio) -2
-1
0
1 at 86.928 kb on + strand, within GFF3574 at 86.928 kb on + strand, within GFF3574 at 86.929 kb on - strand, within GFF3574 at 87.422 kb on + strand, within GFF3575 at 87.422 kb on + strand, within GFF3575 at 87.722 kb on + strand, within GFF3575 at 87.722 kb on + strand, within GFF3575 at 87.722 kb on + strand, within GFF3575 at 87.723 kb on - strand, within GFF3575 at 87.723 kb on - strand, within GFF3575 at 87.723 kb on - strand, within GFF3575 at 88.074 kb on + strand, within GFF3576 at 88.074 kb on + strand, within GFF3576 at 88.075 kb on - strand, within GFF3576 at 88.240 kb on + strand, within GFF3576 at 88.241 kb on - strand, within GFF3576 at 88.633 kb on + strand at 88.633 kb on + strand at 88.633 kb on + strand at 88.634 kb on - strand at 88.720 kb on + strand, within GFF3577 at 88.720 kb on + strand, within GFF3577 at 88.721 kb on - strand, within GFF3577 at 88.721 kb on - strand, within GFF3577 at 88.930 kb on + strand, within GFF3577 at 88.931 kb on - strand, within GFF3577 at 89.089 kb on + strand, within GFF3577 at 89.089 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.248 kb on + strand, within GFF3577 at 89.248 kb on + strand, within GFF3577
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 86,928 + GFF3574 0.64 -0.2 86,928 + GFF3574 0.64 +0.5 86,929 - GFF3574 0.64 -0.4 87,422 + GFF3575 0.28 +0.8 87,422 + GFF3575 0.28 +0.3 87,722 + GFF3575 0.72 -0.2 87,722 + GFF3575 0.72 -0.8 87,722 + GFF3575 0.72 -0.6 87,723 - GFF3575 0.72 +0.4 87,723 - GFF3575 0.72 -2.2 87,723 - GFF3575 0.72 +0.2 88,074 + GFF3576 0.25 -0.5 88,074 + GFF3576 0.25 -0.3 88,075 - GFF3576 0.25 -0.2 88,240 + GFF3576 0.51 -2.6 88,241 - GFF3576 0.51 -1.0 88,633 + -1.5 88,633 + -1.1 88,633 + -0.1 88,634 - -0.4 88,720 + GFF3577 0.19 -0.4 88,720 + GFF3577 0.19 -0.1 88,721 - GFF3577 0.19 -0.1 88,721 - GFF3577 0.19 -1.5 88,930 + GFF3577 0.43 +0.8 88,931 - GFF3577 0.43 -0.0 89,089 + GFF3577 0.60 -1.2 89,089 + GFF3577 0.60 +0.7 89,125 + GFF3577 0.64 -0.9 89,125 + GFF3577 0.64 +1.2 89,125 + GFF3577 0.64 -0.1 89,125 + GFF3577 0.64 -0.9 89,125 + GFF3577 0.64 -0.3 89,125 + GFF3577 0.64 -0.1 89,125 + GFF3577 0.64 +0.0 89,125 + GFF3577 0.64 +0.8 89,125 + GFF3577 0.64 -0.1 89,125 + GFF3577 0.64 -0.2 89,125 + GFF3577 0.64 -0.7 89,125 + GFF3577 0.64 -1.1 89,125 + GFF3577 0.64 +0.6 89,125 + GFF3577 0.64 -0.4 89,126 - GFF3577 0.65 +0.4 89,126 - GFF3577 0.65 +0.9 89,126 - GFF3577 0.65 -0.4 89,126 - GFF3577 0.65 +0.3 89,126 - GFF3577 0.65 +0.4 89,126 - GFF3577 0.65 +0.5 89,126 - GFF3577 0.65 +0.5 89,126 - GFF3577 0.65 -0.7 89,126 - GFF3577 0.65 +0.2 89,126 - GFF3577 0.65 -0.5 89,126 - GFF3577 0.65 -0.2 89,126 - GFF3577 0.65 +0.3 89,126 - GFF3577 0.65 -1.4 89,126 - GFF3577 0.65 -0.1 89,248 + GFF3577 0.78 -0.9 89,248 + GFF3577 0.78 +0.7
Or see this region's nucleotide sequence