Strain Fitness in Variovorax sp. SCN45 around GFF3550

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3549 and GFF3550 are separated by 61 nucleotidesGFF3550 and GFF3551 overlap by 4 nucleotides GFF3549 - FIG01127675: hypothetical protein, at 54,386 to 55,738 GFF3549 GFF3550 - hypothetical protein, at 55,800 to 57,335 GFF3550 GFF3551 - MoxR-like ATPases, at 57,332 to 58,411 GFF3551 Position (kb) 55 56 57 58Strain fitness (log2 ratio) -2 -1 0 1 2at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.266 kb on - strand, within GFF3549at 55.337 kb on + strand, within GFF3549at 55.337 kb on + strand, within GFF3549at 55.337 kb on + strand, within GFF3549at 55.338 kb on - strand, within GFF3549at 55.338 kb on - strand, within GFF3549at 55.338 kb on - strand, within GFF3549at 55.735 kb on - strandat 56.275 kb on - strand, within GFF3550at 56.275 kb on - strand, within GFF3550at 56.733 kb on + strand, within GFF3550at 56.733 kb on + strand, within GFF3550at 56.734 kb on - strand, within GFF3550at 57.138 kb on + strand, within GFF3550at 57.138 kb on + strand, within GFF3550at 57.138 kb on + strand, within GFF3550at 57.138 kb on + strand, within GFF3550at 57.138 kb on + strand, within GFF3550at 57.138 kb on + strand, within GFF3550at 57.138 kb on + strand, within GFF3550at 57.139 kb on - strand, within GFF3550at 57.139 kb on - strand, within GFF3550at 57.139 kb on - strand, within GFF3550at 57.139 kb on - strand, within GFF3550at 57.139 kb on - strand, within GFF3550at 57.139 kb on - strand, within GFF3550at 57.139 kb on - strand, within GFF3550at 57.139 kb on - strand, within GFF3550at 57.139 kb on - strand, within GFF3550at 57.319 kb on - strandat 57.390 kb on + strandat 57.390 kb on + strandat 57.391 kb on - strandat 57.391 kb on - strandat 57.455 kb on + strand, within GFF3551at 57.455 kb on + strand, within GFF3551at 57.455 kb on + strand, within GFF3551at 57.455 kb on + strand, within GFF3551at 57.455 kb on + strand, within GFF3551at 57.455 kb on + strand, within GFF3551at 57.455 kb on + strand, within GFF3551at 57.455 kb on + strand, within GFF3551at 57.456 kb on - strand, within GFF3551at 57.503 kb on + strand, within GFF3551at 57.503 kb on + strand, within GFF3551at 57.503 kb on + strand, within GFF3551at 57.503 kb on + strand, within GFF3551at 57.504 kb on - strand, within GFF3551at 57.504 kb on - strand, within GFF3551at 57.504 kb on - strand, within GFF3551at 57.504 kb on - strand, within GFF3551at 57.504 kb on - strand, within GFF3551at 57.504 kb on - strand, within GFF3551at 57.504 kb on - strand, within GFF3551at 57.504 kb on - strand, within GFF3551at 57.504 kb on - strand, within GFF3551at 57.527 kb on + strand, within GFF3551at 57.572 kb on + strand, within GFF3551at 57.572 kb on + strand, within GFF3551at 57.573 kb on - strand, within GFF3551at 57.573 kb on - strand, within GFF3551at 57.689 kb on + strand, within GFF3551at 57.701 kb on + strand, within GFF3551

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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55,218 + GFF3549 0.61 -0.1
55,218 + GFF3549 0.61 +0.6
55,218 + GFF3549 0.61 -0.3
55,218 + GFF3549 0.61 -0.2
55,218 + GFF3549 0.61 -0.1
55,218 + GFF3549 0.61 +0.0
55,218 + GFF3549 0.61 -0.2
55,218 + GFF3549 0.61 -0.4
55,218 + GFF3549 0.61 -0.0
55,218 + GFF3549 0.61 +0.8
55,218 + GFF3549 0.61 -0.5
55,218 + GFF3549 0.61 +0.1
55,218 + GFF3549 0.61 -0.0
55,218 + GFF3549 0.61 -0.4
55,218 + GFF3549 0.61 -0.5
55,218 + GFF3549 0.61 +0.4
55,218 + GFF3549 0.61 +0.4
55,218 + GFF3549 0.61 -0.3
55,218 + GFF3549 0.61 +1.5
55,218 + GFF3549 0.61 -0.6
55,218 + GFF3549 0.61 -0.2
55,218 + GFF3549 0.61 +1.4
55,218 + GFF3549 0.61 -0.7
55,218 + GFF3549 0.61 +0.6
55,218 + GFF3549 0.61 -0.8
55,218 + GFF3549 0.61 -0.2
55,219 - GFF3549 0.62 -0.1
55,219 - GFF3549 0.62 -0.3
55,219 - GFF3549 0.62 -0.0
55,219 - GFF3549 0.62 -0.5
55,219 - GFF3549 0.62 +0.3
55,219 - GFF3549 0.62 -0.4
55,219 - GFF3549 0.62 +1.5
55,219 - GFF3549 0.62 +0.8
55,219 - GFF3549 0.62 -0.0
55,219 - GFF3549 0.62 +0.5
55,219 - GFF3549 0.62 -2.3
55,219 - GFF3549 0.62 +0.2
55,219 - GFF3549 0.62 -0.0
55,219 - GFF3549 0.62 -1.1
55,219 - GFF3549 0.62 -0.5
55,219 - GFF3549 0.62 -0.8
55,219 - GFF3549 0.62 -0.4
55,219 - GFF3549 0.62 -0.8
55,219 - GFF3549 0.62 -0.1
55,219 - GFF3549 0.62 +0.4
55,219 - GFF3549 0.62 +1.2
55,219 - GFF3549 0.62 -0.6
55,219 - GFF3549 0.62 -1.4
55,219 - GFF3549 0.62 -0.2
55,219 - GFF3549 0.62 +0.8
55,219 - GFF3549 0.62 +0.1
55,219 - GFF3549 0.62 -0.3
55,219 - GFF3549 0.62 -0.8
55,219 - GFF3549 0.62 -0.1
55,219 - GFF3549 0.62 +1.8
55,219 - GFF3549 0.62 +0.7
55,219 - GFF3549 0.62 +0.1
55,219 - GFF3549 0.62 -0.2
55,219 - GFF3549 0.62 -0.4
55,266 - GFF3549 0.65 +0.9
55,337 + GFF3549 0.70 -0.4
55,337 + GFF3549 0.70 +1.2
55,337 + GFF3549 0.70 -0.5
55,338 - GFF3549 0.70 -0.1
55,338 - GFF3549 0.70 -1.1
55,338 - GFF3549 0.70 -0.8
55,735 - -0.0
56,275 - GFF3550 0.31 +1.0
56,275 - GFF3550 0.31 -0.2
56,733 + GFF3550 0.61 +1.4
56,733 + GFF3550 0.61 +0.4
56,734 - GFF3550 0.61 +0.8
57,138 + GFF3550 0.87 -0.8
57,138 + GFF3550 0.87 -0.8
57,138 + GFF3550 0.87 +0.3
57,138 + GFF3550 0.87 +0.6
57,138 + GFF3550 0.87 +0.4
57,138 + GFF3550 0.87 +0.5
57,138 + GFF3550 0.87 -0.0
57,139 - GFF3550 0.87 +0.2
57,139 - GFF3550 0.87 +0.1
57,139 - GFF3550 0.87 +0.1
57,139 - GFF3550 0.87 -0.3
57,139 - GFF3550 0.87 +0.0
57,139 - GFF3550 0.87 -0.5
57,139 - GFF3550 0.87 +0.2
57,139 - GFF3550 0.87 -0.8
57,139 - GFF3550 0.87 +0.0
57,319 - -0.2
57,390 + -2.3
57,390 + -0.0
57,391 - -0.5
57,391 - -0.1
57,455 + GFF3551 0.11 -0.9
57,455 + GFF3551 0.11 +0.0
57,455 + GFF3551 0.11 +0.0
57,455 + GFF3551 0.11 -0.2
57,455 + GFF3551 0.11 -0.3
57,455 + GFF3551 0.11 -1.6
57,455 + GFF3551 0.11 +0.4
57,455 + GFF3551 0.11 -0.5
57,456 - GFF3551 0.11 +0.2
57,503 + GFF3551 0.16 +0.5
57,503 + GFF3551 0.16 +0.6
57,503 + GFF3551 0.16 -0.5
57,503 + GFF3551 0.16 -0.2
57,504 - GFF3551 0.16 +0.9
57,504 - GFF3551 0.16 +0.1
57,504 - GFF3551 0.16 -1.0
57,504 - GFF3551 0.16 +0.3
57,504 - GFF3551 0.16 +0.5
57,504 - GFF3551 0.16 +0.2
57,504 - GFF3551 0.16 -0.3
57,504 - GFF3551 0.16 -0.8
57,504 - GFF3551 0.16 +0.6
57,527 + GFF3551 0.18 -0.6
57,572 + GFF3551 0.22 -0.4
57,572 + GFF3551 0.22 -0.4
57,573 - GFF3551 0.22 -0.1
57,573 - GFF3551 0.22 -0.4
57,689 + GFF3551 0.33 -0.8
57,701 + GFF3551 0.34 +0.8

Or see this region's nucleotide sequence