Strain Fitness in Variovorax sp. SCN45 around GFF3539

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3538 and GFF3539 are separated by 13 nucleotidesGFF3539 and GFF3540 are separated by 131 nucleotidesGFF3540 and GFF3541 overlap by 1 nucleotides GFF3538 - Ferric iron ABC transporter, iron-binding protein, at 44,176 to 45,210 GFF3538 GFF3539 - Probable ALANIN-rich signal peptide protein, at 45,224 to 45,721 GFF3539 GFF3540 - hypothetical protein, at 45,853 to 46,515 GFF3540 GFF3541 - hypothetical protein, at 46,515 to 47,342 GFF3541 Position (kb) 45 46Strain fitness (log2 ratio) -2 -1 0 1 2 3at 44.280 kb on + strand, within GFF3538at 44.280 kb on + strand, within GFF3538at 44.280 kb on + strand, within GFF3538at 44.415 kb on + strand, within GFF3538at 44.416 kb on - strand, within GFF3538at 44.416 kb on - strand, within GFF3538at 44.416 kb on - strand, within GFF3538at 44.479 kb on + strand, within GFF3538at 44.491 kb on + strand, within GFF3538at 44.491 kb on + strand, within GFF3538at 44.492 kb on - strand, within GFF3538at 44.492 kb on - strand, within GFF3538at 44.492 kb on - strand, within GFF3538at 44.506 kb on + strand, within GFF3538at 44.506 kb on + strand, within GFF3538at 44.507 kb on - strand, within GFF3538at 44.507 kb on - strand, within GFF3538at 44.527 kb on + strand, within GFF3538at 44.527 kb on + strand, within GFF3538at 44.527 kb on + strand, within GFF3538at 44.527 kb on + strand, within GFF3538at 44.527 kb on + strand, within GFF3538at 44.528 kb on - strand, within GFF3538at 44.528 kb on - strand, within GFF3538at 44.560 kb on + strand, within GFF3538at 44.560 kb on + strand, within GFF3538at 44.560 kb on + strand, within GFF3538at 44.560 kb on + strand, within GFF3538at 44.560 kb on + strand, within GFF3538at 44.560 kb on + strand, within GFF3538at 44.560 kb on + strand, within GFF3538at 44.560 kb on + strand, within GFF3538at 44.560 kb on + strand, within GFF3538at 44.560 kb on + strand, within GFF3538at 44.561 kb on - strand, within GFF3538at 44.561 kb on - strand, within GFF3538at 44.561 kb on - strand, within GFF3538at 44.561 kb on - strand, within GFF3538at 44.561 kb on - strand, within GFF3538at 44.561 kb on - strand, within GFF3538at 44.561 kb on - strand, within GFF3538at 44.561 kb on - strand, within GFF3538at 44.656 kb on + strand, within GFF3538at 44.656 kb on + strand, within GFF3538at 44.656 kb on + strand, within GFF3538at 44.657 kb on - strand, within GFF3538at 44.657 kb on - strand, within GFF3538at 44.704 kb on + strand, within GFF3538at 44.704 kb on + strand, within GFF3538at 44.704 kb on + strand, within GFF3538at 44.704 kb on + strand, within GFF3538at 44.704 kb on + strand, within GFF3538at 44.705 kb on - strand, within GFF3538at 44.705 kb on - strand, within GFF3538at 44.705 kb on - strand, within GFF3538at 44.705 kb on - strand, within GFF3538at 44.758 kb on + strand, within GFF3538at 44.758 kb on + strand, within GFF3538at 44.758 kb on + strand, within GFF3538at 44.759 kb on - strand, within GFF3538at 44.791 kb on + strand, within GFF3538at 44.791 kb on + strand, within GFF3538at 44.791 kb on + strand, within GFF3538at 44.791 kb on + strand, within GFF3538at 44.791 kb on + strand, within GFF3538at 44.792 kb on - strand, within GFF3538at 44.792 kb on - strand, within GFF3538at 44.884 kb on + strand, within GFF3538at 44.884 kb on + strand, within GFF3538at 44.933 kb on - strand, within GFF3538at 44.992 kb on + strand, within GFF3538at 44.992 kb on + strand, within GFF3538at 44.993 kb on - strand, within GFF3538at 44.995 kb on + strand, within GFF3538at 44.995 kb on + strand, within GFF3538at 44.995 kb on + strand, within GFF3538at 44.995 kb on + strand, within GFF3538at 44.996 kb on - strand, within GFF3538at 44.996 kb on - strand, within GFF3538at 44.996 kb on - strand, within GFF3538at 44.996 kb on - strand, within GFF3538at 44.996 kb on - strand, within GFF3538at 44.996 kb on - strand, within GFF3538at 44.996 kb on - strand, within GFF3538at 45.124 kb on + strandat 45.124 kb on + strandat 45.124 kb on + strandat 45.124 kb on + strandat 45.139 kb on + strandat 45.139 kb on + strandat 45.139 kb on + strandat 45.139 kb on + strandat 45.140 kb on - strandat 45.140 kb on - strandat 45.140 kb on - strandat 45.225 kb on + strandat 45.226 kb on - strandat 45.226 kb on - strandat 45.288 kb on + strand, within GFF3539at 45.288 kb on + strand, within GFF3539at 45.288 kb on + strand, within GFF3539at 45.289 kb on - strand, within GFF3539at 45.289 kb on - strand, within GFF3539at 45.289 kb on - strand, within GFF3539at 45.289 kb on - strand, within GFF3539at 45.312 kb on + strand, within GFF3539at 45.315 kb on + strand, within GFF3539at 45.315 kb on + strand, within GFF3539at 45.315 kb on + strand, within GFF3539at 45.336 kb on + strand, within GFF3539at 45.336 kb on + strand, within GFF3539at 45.337 kb on - strand, within GFF3539at 45.337 kb on - strand, within GFF3539at 45.337 kb on - strand, within GFF3539at 45.337 kb on - strand, within GFF3539at 45.337 kb on - strand, within GFF3539at 45.337 kb on - strand, within GFF3539at 45.467 kb on + strand, within GFF3539at 45.467 kb on + strand, within GFF3539at 45.467 kb on + strand, within GFF3539at 45.467 kb on + strand, within GFF3539at 45.467 kb on + strand, within GFF3539at 45.467 kb on + strand, within GFF3539at 45.468 kb on - strand, within GFF3539at 45.468 kb on - strand, within GFF3539at 45.468 kb on - strand, within GFF3539at 45.468 kb on - strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.764 kb on + strandat 45.764 kb on + strandat 45.823 kb on + strandat 45.823 kb on + strandat 45.823 kb on + strandat 45.823 kb on + strandat 45.824 kb on - strandat 45.824 kb on - strandat 45.824 kb on - strandat 45.890 kb on + strandat 45.890 kb on + strandat 45.890 kb on + strandat 45.891 kb on - strandat 45.891 kb on - strandat 45.891 kb on - strandat 45.891 kb on - strandat 45.923 kb on + strand, within GFF3540at 45.923 kb on + strand, within GFF3540at 46.260 kb on + strand, within GFF3540at 46.260 kb on + strand, within GFF3540at 46.260 kb on + strand, within GFF3540at 46.585 kb on + strandat 46.586 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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44,280 + GFF3538 0.10 -0.2
44,280 + GFF3538 0.10 +0.0
44,280 + GFF3538 0.10 -0.2
44,415 + GFF3538 0.23 -0.9
44,416 - GFF3538 0.23 -0.1
44,416 - GFF3538 0.23 +0.2
44,416 - GFF3538 0.23 -0.1
44,479 + GFF3538 0.29 -0.6
44,491 + GFF3538 0.30 +0.2
44,491 + GFF3538 0.30 -1.5
44,492 - GFF3538 0.31 +0.5
44,492 - GFF3538 0.31 +0.3
44,492 - GFF3538 0.31 -0.4
44,506 + GFF3538 0.32 -0.2
44,506 + GFF3538 0.32 -0.2
44,507 - GFF3538 0.32 +0.2
44,507 - GFF3538 0.32 +1.6
44,527 + GFF3538 0.34 -0.4
44,527 + GFF3538 0.34 -1.5
44,527 + GFF3538 0.34 -0.2
44,527 + GFF3538 0.34 +0.5
44,527 + GFF3538 0.34 +0.3
44,528 - GFF3538 0.34 -0.5
44,528 - GFF3538 0.34 +0.5
44,560 + GFF3538 0.37 -1.0
44,560 + GFF3538 0.37 -0.9
44,560 + GFF3538 0.37 -0.2
44,560 + GFF3538 0.37 +0.7
44,560 + GFF3538 0.37 +0.6
44,560 + GFF3538 0.37 -1.3
44,560 + GFF3538 0.37 +0.5
44,560 + GFF3538 0.37 +0.0
44,560 + GFF3538 0.37 +0.1
44,560 + GFF3538 0.37 -0.8
44,561 - GFF3538 0.37 -0.0
44,561 - GFF3538 0.37 +0.2
44,561 - GFF3538 0.37 +0.8
44,561 - GFF3538 0.37 +0.2
44,561 - GFF3538 0.37 +0.3
44,561 - GFF3538 0.37 -1.0
44,561 - GFF3538 0.37 -0.6
44,561 - GFF3538 0.37 +0.2
44,656 + GFF3538 0.46 -0.2
44,656 + GFF3538 0.46 +0.9
44,656 + GFF3538 0.46 -1.8
44,657 - GFF3538 0.46 -0.7
44,657 - GFF3538 0.46 -1.2
44,704 + GFF3538 0.51 +1.8
44,704 + GFF3538 0.51 -0.5
44,704 + GFF3538 0.51 -0.4
44,704 + GFF3538 0.51 -0.5
44,704 + GFF3538 0.51 +0.4
44,705 - GFF3538 0.51 -0.0
44,705 - GFF3538 0.51 -0.4
44,705 - GFF3538 0.51 +0.0
44,705 - GFF3538 0.51 -1.0
44,758 + GFF3538 0.56 +1.1
44,758 + GFF3538 0.56 -1.0
44,758 + GFF3538 0.56 +0.2
44,759 - GFF3538 0.56 -0.2
44,791 + GFF3538 0.59 -0.5
44,791 + GFF3538 0.59 -0.6
44,791 + GFF3538 0.59 -0.9
44,791 + GFF3538 0.59 +0.2
44,791 + GFF3538 0.59 -0.6
44,792 - GFF3538 0.60 -0.7
44,792 - GFF3538 0.60 -0.5
44,884 + GFF3538 0.68 -0.2
44,884 + GFF3538 0.68 -0.3
44,933 - GFF3538 0.73 -0.4
44,992 + GFF3538 0.79 +0.4
44,992 + GFF3538 0.79 -0.5
44,993 - GFF3538 0.79 +0.4
44,995 + GFF3538 0.79 -0.8
44,995 + GFF3538 0.79 +1.4
44,995 + GFF3538 0.79 +0.2
44,995 + GFF3538 0.79 -0.4
44,996 - GFF3538 0.79 +0.8
44,996 - GFF3538 0.79 -0.5
44,996 - GFF3538 0.79 -0.5
44,996 - GFF3538 0.79 -1.0
44,996 - GFF3538 0.79 +1.0
44,996 - GFF3538 0.79 -0.2
44,996 - GFF3538 0.79 -0.2
45,124 + -0.2
45,124 + +1.5
45,124 + -0.2
45,124 + -0.3
45,139 + +0.5
45,139 + +1.6
45,139 + -0.1
45,139 + -0.4
45,140 - -0.2
45,140 - -0.2
45,140 - -0.2
45,225 + -0.8
45,226 - +0.5
45,226 - +0.7
45,288 + GFF3539 0.13 +0.5
45,288 + GFF3539 0.13 -0.3
45,288 + GFF3539 0.13 -1.2
45,289 - GFF3539 0.13 -0.5
45,289 - GFF3539 0.13 -0.4
45,289 - GFF3539 0.13 +0.9
45,289 - GFF3539 0.13 +1.0
45,312 + GFF3539 0.18 +1.5
45,315 + GFF3539 0.18 -0.1
45,315 + GFF3539 0.18 +0.8
45,315 + GFF3539 0.18 -0.2
45,336 + GFF3539 0.22 +0.3
45,336 + GFF3539 0.22 -0.8
45,337 - GFF3539 0.23 -0.4
45,337 - GFF3539 0.23 -0.5
45,337 - GFF3539 0.23 -0.3
45,337 - GFF3539 0.23 -0.3
45,337 - GFF3539 0.23 +0.0
45,337 - GFF3539 0.23 -0.7
45,467 + GFF3539 0.49 -0.8
45,467 + GFF3539 0.49 -0.2
45,467 + GFF3539 0.49 -1.1
45,467 + GFF3539 0.49 +0.2
45,467 + GFF3539 0.49 -0.4
45,467 + GFF3539 0.49 -2.5
45,468 - GFF3539 0.49 -0.4
45,468 - GFF3539 0.49 -0.0
45,468 - GFF3539 0.49 -2.2
45,468 - GFF3539 0.49 -1.1
45,594 + GFF3539 0.74 +1.8
45,594 + GFF3539 0.74 -1.7
45,594 + GFF3539 0.74 -0.0
45,594 + GFF3539 0.74 +0.1
45,594 + GFF3539 0.74 -0.2
45,594 + GFF3539 0.74 -0.1
45,594 + GFF3539 0.74 -1.1
45,594 + GFF3539 0.74 +0.1
45,594 + GFF3539 0.74 +0.2
45,594 + GFF3539 0.74 -0.2
45,594 + GFF3539 0.74 +1.3
45,595 - GFF3539 0.74 +0.4
45,595 - GFF3539 0.74 -0.7
45,595 - GFF3539 0.74 -0.1
45,595 - GFF3539 0.74 +0.2
45,595 - GFF3539 0.74 -0.2
45,595 - GFF3539 0.74 +0.2
45,595 - GFF3539 0.74 -0.9
45,595 - GFF3539 0.74 -0.1
45,595 - GFF3539 0.74 +1.8
45,595 - GFF3539 0.74 +1.3
45,764 + -0.1
45,764 + -0.5
45,823 + -1.4
45,823 + -0.9
45,823 + -0.4
45,823 + +0.2
45,824 - -0.7
45,824 - -0.2
45,824 - +2.4
45,890 + +0.8
45,890 + -0.4
45,890 + +0.2
45,891 - -0.0
45,891 - +0.8
45,891 - -0.7
45,891 - -0.3
45,923 + GFF3540 0.11 +1.1
45,923 + GFF3540 0.11 -0.5
46,260 + GFF3540 0.61 -0.0
46,260 + GFF3540 0.61 +3.1
46,260 + GFF3540 0.61 -0.1
46,585 + +0.2
46,586 - -0.4

Or see this region's nucleotide sequence