Strain Fitness in Variovorax sp. SCN45 around GFF3538

Experiment: M9 with Supernatant from Cyptococcus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3537 and GFF3538 are separated by 60 nucleotidesGFF3538 and GFF3539 are separated by 13 nucleotidesGFF3539 and GFF3540 are separated by 131 nucleotides GFF3537 - Transcriptional regulator, LysR family, at 43,195 to 44,115 GFF3537 GFF3538 - Ferric iron ABC transporter, iron-binding protein, at 44,176 to 45,210 GFF3538 GFF3539 - Probable ALANIN-rich signal peptide protein, at 45,224 to 45,721 GFF3539 GFF3540 - hypothetical protein, at 45,853 to 46,515 GFF3540 Position (kb) 44 45 46Strain fitness (log2 ratio) -2 -1 0 1 2at 43.390 kb on + strand, within GFF3537at 43.390 kb on + strand, within GFF3537at 43.390 kb on + strand, within GFF3537at 43.391 kb on - strand, within GFF3537at 43.391 kb on - strand, within GFF3537at 43.393 kb on + strand, within GFF3537at 43.393 kb on + strand, within GFF3537at 43.394 kb on - strand, within GFF3537at 43.394 kb on - strand, within GFF3537at 43.394 kb on - strand, within GFF3537at 43.394 kb on - strand, within GFF3537at 43.711 kb on + strand, within GFF3537at 43.711 kb on + strand, within GFF3537at 43.711 kb on + strand, within GFF3537at 43.711 kb on + strand, within GFF3537at 43.712 kb on - strand, within GFF3537at 43.712 kb on - strand, within GFF3537at 43.777 kb on + strand, within GFF3537at 43.778 kb on - strand, within GFF3537at 43.778 kb on - strand, within GFF3537at 43.778 kb on - strand, within GFF3537at 43.796 kb on + strand, within GFF3537at 44.280 kb on + strand, within GFF3538at 44.280 kb on + strand, within GFF3538at 44.280 kb on + strand, within GFF3538at 44.415 kb on + strand, within GFF3538at 44.416 kb on - strand, within GFF3538at 44.416 kb on - strand, within GFF3538at 44.416 kb on - strand, within GFF3538at 44.479 kb on + strand, within GFF3538at 44.491 kb on + strand, within GFF3538at 44.491 kb on + strand, within GFF3538at 44.492 kb on - strand, within GFF3538at 44.492 kb on - strand, within GFF3538at 44.492 kb on - strand, within GFF3538at 44.506 kb on + strand, within GFF3538at 44.506 kb on + strand, within GFF3538at 44.507 kb on - strand, within GFF3538at 44.507 kb on - strand, within GFF3538at 44.527 kb on + strand, within GFF3538at 44.527 kb on + strand, within GFF3538at 44.527 kb on + strand, within GFF3538at 44.527 kb on + strand, within GFF3538at 44.527 kb on + strand, within GFF3538at 44.528 kb on - strand, within GFF3538at 44.528 kb on - strand, within GFF3538at 44.560 kb on + strand, within GFF3538at 44.560 kb on + strand, within GFF3538at 44.560 kb on + strand, within GFF3538at 44.560 kb on + strand, within GFF3538at 44.560 kb on + strand, within GFF3538at 44.560 kb on + strand, within GFF3538at 44.560 kb on + strand, within GFF3538at 44.560 kb on + strand, within GFF3538at 44.560 kb on + strand, within GFF3538at 44.560 kb on + strand, within GFF3538at 44.561 kb on - strand, within GFF3538at 44.561 kb on - strand, within GFF3538at 44.561 kb on - strand, within GFF3538at 44.561 kb on - strand, within GFF3538at 44.561 kb on - strand, within GFF3538at 44.561 kb on - strand, within GFF3538at 44.561 kb on - strand, within GFF3538at 44.561 kb on - strand, within GFF3538at 44.656 kb on + strand, within GFF3538at 44.656 kb on + strand, within GFF3538at 44.656 kb on + strand, within GFF3538at 44.657 kb on - strand, within GFF3538at 44.657 kb on - strand, within GFF3538at 44.704 kb on + strand, within GFF3538at 44.704 kb on + strand, within GFF3538at 44.704 kb on + strand, within GFF3538at 44.704 kb on + strand, within GFF3538at 44.704 kb on + strand, within GFF3538at 44.705 kb on - strand, within GFF3538at 44.705 kb on - strand, within GFF3538at 44.705 kb on - strand, within GFF3538at 44.705 kb on - strand, within GFF3538at 44.758 kb on + strand, within GFF3538at 44.758 kb on + strand, within GFF3538at 44.758 kb on + strand, within GFF3538at 44.759 kb on - strand, within GFF3538at 44.791 kb on + strand, within GFF3538at 44.791 kb on + strand, within GFF3538at 44.791 kb on + strand, within GFF3538at 44.791 kb on + strand, within GFF3538at 44.791 kb on + strand, within GFF3538at 44.792 kb on - strand, within GFF3538at 44.792 kb on - strand, within GFF3538at 44.884 kb on + strand, within GFF3538at 44.884 kb on + strand, within GFF3538at 44.933 kb on - strand, within GFF3538at 44.992 kb on + strand, within GFF3538at 44.992 kb on + strand, within GFF3538at 44.993 kb on - strand, within GFF3538at 44.995 kb on + strand, within GFF3538at 44.995 kb on + strand, within GFF3538at 44.995 kb on + strand, within GFF3538at 44.995 kb on + strand, within GFF3538at 44.996 kb on - strand, within GFF3538at 44.996 kb on - strand, within GFF3538at 44.996 kb on - strand, within GFF3538at 44.996 kb on - strand, within GFF3538at 44.996 kb on - strand, within GFF3538at 44.996 kb on - strand, within GFF3538at 44.996 kb on - strand, within GFF3538at 45.124 kb on + strandat 45.124 kb on + strandat 45.124 kb on + strandat 45.124 kb on + strandat 45.139 kb on + strandat 45.139 kb on + strandat 45.139 kb on + strandat 45.139 kb on + strandat 45.140 kb on - strandat 45.140 kb on - strandat 45.140 kb on - strandat 45.225 kb on + strandat 45.226 kb on - strandat 45.226 kb on - strandat 45.288 kb on + strand, within GFF3539at 45.288 kb on + strand, within GFF3539at 45.288 kb on + strand, within GFF3539at 45.289 kb on - strand, within GFF3539at 45.289 kb on - strand, within GFF3539at 45.289 kb on - strand, within GFF3539at 45.289 kb on - strand, within GFF3539at 45.312 kb on + strand, within GFF3539at 45.315 kb on + strand, within GFF3539at 45.315 kb on + strand, within GFF3539at 45.315 kb on + strand, within GFF3539at 45.336 kb on + strand, within GFF3539at 45.336 kb on + strand, within GFF3539at 45.337 kb on - strand, within GFF3539at 45.337 kb on - strand, within GFF3539at 45.337 kb on - strand, within GFF3539at 45.337 kb on - strand, within GFF3539at 45.337 kb on - strand, within GFF3539at 45.337 kb on - strand, within GFF3539at 45.467 kb on + strand, within GFF3539at 45.467 kb on + strand, within GFF3539at 45.467 kb on + strand, within GFF3539at 45.467 kb on + strand, within GFF3539at 45.467 kb on + strand, within GFF3539at 45.467 kb on + strand, within GFF3539at 45.468 kb on - strand, within GFF3539at 45.468 kb on - strand, within GFF3539at 45.468 kb on - strand, within GFF3539at 45.468 kb on - strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.764 kb on + strandat 45.764 kb on + strandat 45.823 kb on + strandat 45.823 kb on + strandat 45.823 kb on + strandat 45.823 kb on + strandat 45.824 kb on - strandat 45.824 kb on - strandat 45.824 kb on - strandat 45.890 kb on + strandat 45.890 kb on + strandat 45.890 kb on + strandat 45.891 kb on - strandat 45.891 kb on - strandat 45.891 kb on - strandat 45.891 kb on - strandat 45.923 kb on + strand, within GFF3540at 45.923 kb on + strand, within GFF3540

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
remove
43,390 + GFF3537 0.21 +0.7
43,390 + GFF3537 0.21 -2.6
43,390 + GFF3537 0.21 -1.1
43,391 - GFF3537 0.21 -1.4
43,391 - GFF3537 0.21 -0.9
43,393 + GFF3537 0.21 -0.5
43,393 + GFF3537 0.21 -1.4
43,394 - GFF3537 0.22 -0.6
43,394 - GFF3537 0.22 -0.2
43,394 - GFF3537 0.22 -0.0
43,394 - GFF3537 0.22 -1.3
43,711 + GFF3537 0.56 +0.1
43,711 + GFF3537 0.56 -0.3
43,711 + GFF3537 0.56 +0.2
43,711 + GFF3537 0.56 +1.8
43,712 - GFF3537 0.56 +0.6
43,712 - GFF3537 0.56 -0.8
43,777 + GFF3537 0.63 -0.2
43,778 - GFF3537 0.63 -0.1
43,778 - GFF3537 0.63 -0.3
43,778 - GFF3537 0.63 -0.5
43,796 + GFF3537 0.65 +0.0
44,280 + GFF3538 0.10 -0.2
44,280 + GFF3538 0.10 +0.0
44,280 + GFF3538 0.10 -0.2
44,415 + GFF3538 0.23 -0.9
44,416 - GFF3538 0.23 -0.1
44,416 - GFF3538 0.23 +0.2
44,416 - GFF3538 0.23 -0.1
44,479 + GFF3538 0.29 -0.6
44,491 + GFF3538 0.30 +0.2
44,491 + GFF3538 0.30 -1.5
44,492 - GFF3538 0.31 +0.5
44,492 - GFF3538 0.31 +0.3
44,492 - GFF3538 0.31 -0.4
44,506 + GFF3538 0.32 -0.2
44,506 + GFF3538 0.32 -0.2
44,507 - GFF3538 0.32 +0.2
44,507 - GFF3538 0.32 +1.6
44,527 + GFF3538 0.34 -0.4
44,527 + GFF3538 0.34 -1.5
44,527 + GFF3538 0.34 -0.2
44,527 + GFF3538 0.34 +0.5
44,527 + GFF3538 0.34 +0.3
44,528 - GFF3538 0.34 -0.5
44,528 - GFF3538 0.34 +0.5
44,560 + GFF3538 0.37 -1.0
44,560 + GFF3538 0.37 -0.9
44,560 + GFF3538 0.37 -0.2
44,560 + GFF3538 0.37 +0.7
44,560 + GFF3538 0.37 +0.6
44,560 + GFF3538 0.37 -1.3
44,560 + GFF3538 0.37 +0.5
44,560 + GFF3538 0.37 +0.0
44,560 + GFF3538 0.37 +0.1
44,560 + GFF3538 0.37 -0.8
44,561 - GFF3538 0.37 -0.0
44,561 - GFF3538 0.37 +0.2
44,561 - GFF3538 0.37 +0.8
44,561 - GFF3538 0.37 +0.2
44,561 - GFF3538 0.37 +0.3
44,561 - GFF3538 0.37 -1.0
44,561 - GFF3538 0.37 -0.6
44,561 - GFF3538 0.37 +0.2
44,656 + GFF3538 0.46 -0.2
44,656 + GFF3538 0.46 +0.9
44,656 + GFF3538 0.46 -1.8
44,657 - GFF3538 0.46 -0.7
44,657 - GFF3538 0.46 -1.2
44,704 + GFF3538 0.51 +1.8
44,704 + GFF3538 0.51 -0.5
44,704 + GFF3538 0.51 -0.4
44,704 + GFF3538 0.51 -0.5
44,704 + GFF3538 0.51 +0.4
44,705 - GFF3538 0.51 -0.0
44,705 - GFF3538 0.51 -0.4
44,705 - GFF3538 0.51 +0.0
44,705 - GFF3538 0.51 -1.0
44,758 + GFF3538 0.56 +1.1
44,758 + GFF3538 0.56 -1.0
44,758 + GFF3538 0.56 +0.2
44,759 - GFF3538 0.56 -0.2
44,791 + GFF3538 0.59 -0.5
44,791 + GFF3538 0.59 -0.6
44,791 + GFF3538 0.59 -0.9
44,791 + GFF3538 0.59 +0.2
44,791 + GFF3538 0.59 -0.6
44,792 - GFF3538 0.60 -0.7
44,792 - GFF3538 0.60 -0.5
44,884 + GFF3538 0.68 -0.2
44,884 + GFF3538 0.68 -0.3
44,933 - GFF3538 0.73 -0.4
44,992 + GFF3538 0.79 +0.4
44,992 + GFF3538 0.79 -0.5
44,993 - GFF3538 0.79 +0.4
44,995 + GFF3538 0.79 -0.8
44,995 + GFF3538 0.79 +1.4
44,995 + GFF3538 0.79 +0.2
44,995 + GFF3538 0.79 -0.4
44,996 - GFF3538 0.79 +0.8
44,996 - GFF3538 0.79 -0.5
44,996 - GFF3538 0.79 -0.5
44,996 - GFF3538 0.79 -1.0
44,996 - GFF3538 0.79 +1.0
44,996 - GFF3538 0.79 -0.2
44,996 - GFF3538 0.79 -0.2
45,124 + -0.2
45,124 + +1.5
45,124 + -0.2
45,124 + -0.3
45,139 + +0.5
45,139 + +1.6
45,139 + -0.1
45,139 + -0.4
45,140 - -0.2
45,140 - -0.2
45,140 - -0.2
45,225 + -0.8
45,226 - +0.5
45,226 - +0.7
45,288 + GFF3539 0.13 +0.5
45,288 + GFF3539 0.13 -0.3
45,288 + GFF3539 0.13 -1.2
45,289 - GFF3539 0.13 -0.5
45,289 - GFF3539 0.13 -0.4
45,289 - GFF3539 0.13 +0.9
45,289 - GFF3539 0.13 +1.0
45,312 + GFF3539 0.18 +1.5
45,315 + GFF3539 0.18 -0.1
45,315 + GFF3539 0.18 +0.8
45,315 + GFF3539 0.18 -0.2
45,336 + GFF3539 0.22 +0.3
45,336 + GFF3539 0.22 -0.8
45,337 - GFF3539 0.23 -0.4
45,337 - GFF3539 0.23 -0.5
45,337 - GFF3539 0.23 -0.3
45,337 - GFF3539 0.23 -0.3
45,337 - GFF3539 0.23 +0.0
45,337 - GFF3539 0.23 -0.7
45,467 + GFF3539 0.49 -0.8
45,467 + GFF3539 0.49 -0.2
45,467 + GFF3539 0.49 -1.1
45,467 + GFF3539 0.49 +0.2
45,467 + GFF3539 0.49 -0.4
45,467 + GFF3539 0.49 -2.5
45,468 - GFF3539 0.49 -0.4
45,468 - GFF3539 0.49 -0.0
45,468 - GFF3539 0.49 -2.2
45,468 - GFF3539 0.49 -1.1
45,594 + GFF3539 0.74 +1.8
45,594 + GFF3539 0.74 -1.7
45,594 + GFF3539 0.74 -0.0
45,594 + GFF3539 0.74 +0.1
45,594 + GFF3539 0.74 -0.2
45,594 + GFF3539 0.74 -0.1
45,594 + GFF3539 0.74 -1.1
45,594 + GFF3539 0.74 +0.1
45,594 + GFF3539 0.74 +0.2
45,594 + GFF3539 0.74 -0.2
45,594 + GFF3539 0.74 +1.3
45,595 - GFF3539 0.74 +0.4
45,595 - GFF3539 0.74 -0.7
45,595 - GFF3539 0.74 -0.1
45,595 - GFF3539 0.74 +0.2
45,595 - GFF3539 0.74 -0.2
45,595 - GFF3539 0.74 +0.2
45,595 - GFF3539 0.74 -0.9
45,595 - GFF3539 0.74 -0.1
45,595 - GFF3539 0.74 +1.8
45,595 - GFF3539 0.74 +1.3
45,764 + -0.1
45,764 + -0.5
45,823 + -1.4
45,823 + -0.9
45,823 + -0.4
45,823 + +0.2
45,824 - -0.7
45,824 - -0.2
45,824 - +2.4
45,890 + +0.8
45,890 + -0.4
45,890 + +0.2
45,891 - -0.0
45,891 - +0.8
45,891 - -0.7
45,891 - -0.3
45,923 + GFF3540 0.11 +1.1
45,923 + GFF3540 0.11 -0.5

Or see this region's nucleotide sequence