Strain Fitness in Variovorax sp. SCN45 around GFF2999

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2998 and GFF2999 are separated by 169 nucleotidesGFF2999 and GFF3000 overlap by 4 nucleotides GFF2998 - Virulence factor BrkB, at 428,132 to 429,343 GFF2998 GFF2999 - Putative transmembrane protein, at 429,513 to 429,875 GFF2999 GFF3000 - D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.2), at 429,872 to 431,299 GFF3000 Position (kb) 429 430Strain fitness (log2 ratio) -2 -1 0 1at 428.520 kb on + strand, within GFF2998at 428.520 kb on + strand, within GFF2998at 428.521 kb on - strand, within GFF2998at 428.565 kb on + strand, within GFF2998at 428.565 kb on + strand, within GFF2998at 428.565 kb on + strand, within GFF2998at 428.565 kb on + strand, within GFF2998at 428.566 kb on - strand, within GFF2998at 428.566 kb on - strand, within GFF2998at 428.566 kb on - strand, within GFF2998at 428.566 kb on - strand, within GFF2998at 428.566 kb on - strand, within GFF2998at 428.608 kb on - strand, within GFF2998at 428.619 kb on + strand, within GFF2998at 428.619 kb on + strand, within GFF2998at 428.620 kb on - strand, within GFF2998at 428.620 kb on - strand, within GFF2998at 428.620 kb on - strand, within GFF2998at 428.640 kb on + strand, within GFF2998at 428.640 kb on + strand, within GFF2998at 428.640 kb on + strand, within GFF2998at 428.640 kb on + strand, within GFF2998at 428.641 kb on - strand, within GFF2998at 428.641 kb on - strand, within GFF2998at 428.641 kb on - strand, within GFF2998at 428.641 kb on - strand, within GFF2998at 428.643 kb on + strand, within GFF2998at 428.643 kb on + strand, within GFF2998at 428.643 kb on + strand, within GFF2998at 428.644 kb on - strand, within GFF2998at 428.736 kb on + strand, within GFF2998at 428.736 kb on + strand, within GFF2998at 428.736 kb on + strand, within GFF2998at 428.736 kb on + strand, within GFF2998at 428.737 kb on - strand, within GFF2998at 428.737 kb on - strand, within GFF2998at 428.737 kb on - strand, within GFF2998at 428.737 kb on - strand, within GFF2998at 428.737 kb on - strand, within GFF2998at 428.737 kb on - strand, within GFF2998at 428.742 kb on + strand, within GFF2998at 428.742 kb on + strand, within GFF2998at 428.742 kb on + strand, within GFF2998at 428.742 kb on + strand, within GFF2998at 428.844 kb on + strand, within GFF2998at 428.844 kb on + strand, within GFF2998at 428.844 kb on + strand, within GFF2998at 428.844 kb on + strand, within GFF2998at 428.844 kb on + strand, within GFF2998at 428.844 kb on + strand, within GFF2998at 428.844 kb on + strand, within GFF2998at 428.844 kb on + strand, within GFF2998at 428.845 kb on - strand, within GFF2998at 428.845 kb on - strand, within GFF2998at 428.845 kb on - strand, within GFF2998at 428.845 kb on - strand, within GFF2998at 428.845 kb on - strand, within GFF2998at 428.845 kb on - strand, within GFF2998at 428.845 kb on - strand, within GFF2998at 428.845 kb on - strand, within GFF2998at 428.845 kb on - strand, within GFF2998at 428.845 kb on - strand, within GFF2998at 428.845 kb on - strand, within GFF2998at 428.845 kb on - strand, within GFF2998at 428.904 kb on + strand, within GFF2998at 428.905 kb on - strand, within GFF2998at 429.270 kb on - strandat 429.338 kb on + strandat 429.339 kb on - strandat 429.343 kb on + strandat 429.343 kb on + strandat 429.343 kb on + strandat 429.343 kb on + strandat 429.343 kb on + strandat 429.343 kb on + strandat 429.343 kb on + strandat 429.343 kb on + strandat 429.343 kb on + strandat 429.344 kb on - strandat 429.344 kb on - strandat 429.344 kb on - strandat 429.344 kb on - strandat 429.344 kb on - strandat 429.654 kb on + strand, within GFF2999at 429.654 kb on + strand, within GFF2999at 429.654 kb on + strand, within GFF2999at 429.654 kb on + strand, within GFF2999at 429.654 kb on + strand, within GFF2999at 429.654 kb on + strand, within GFF2999at 429.654 kb on + strand, within GFF2999at 429.654 kb on + strand, within GFF2999at 429.654 kb on + strand, within GFF2999at 429.654 kb on + strand, within GFF2999at 429.654 kb on + strand, within GFF2999at 429.654 kb on + strand, within GFF2999at 429.654 kb on + strand, within GFF2999at 429.654 kb on + strand, within GFF2999at 429.654 kb on + strand, within GFF2999at 429.655 kb on - strand, within GFF2999at 429.655 kb on - strand, within GFF2999at 429.655 kb on - strand, within GFF2999at 429.655 kb on - strand, within GFF2999at 429.655 kb on - strand, within GFF2999at 429.655 kb on - strand, within GFF2999at 429.655 kb on - strand, within GFF2999at 429.655 kb on - strand, within GFF2999at 429.655 kb on - strand, within GFF2999at 429.655 kb on - strand, within GFF2999at 429.655 kb on - strand, within GFF2999at 429.655 kb on - strand, within GFF2999at 429.655 kb on - strand, within GFF2999at 429.655 kb on - strand, within GFF2999at 429.655 kb on - strand, within GFF2999at 429.655 kb on - strand, within GFF2999at 429.655 kb on - strand, within GFF2999at 429.655 kb on - strand, within GFF2999at 429.655 kb on - strand, within GFF2999at 429.660 kb on + strand, within GFF2999at 429.660 kb on + strand, within GFF2999at 429.661 kb on - strand, within GFF2999at 429.661 kb on - strand, within GFF2999at 429.661 kb on - strand, within GFF2999at 429.661 kb on - strand, within GFF2999at 429.661 kb on - strand, within GFF2999at 429.690 kb on + strand, within GFF2999at 429.691 kb on - strand, within GFF2999at 429.691 kb on - strand, within GFF2999at 429.691 kb on - strand, within GFF2999at 429.931 kb on - strandat 429.931 kb on - strandat 429.931 kb on - strandat 429.931 kb on - strandat 429.956 kb on + strandat 430.445 kb on + strand, within GFF3000at 430.719 kb on - strand, within GFF3000at 430.719 kb on - strand, within GFF3000at 430.719 kb on - strand, within GFF3000at 430.719 kb on - strand, within GFF3000

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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428,520 + GFF2998 0.32 +0.3
428,520 + GFF2998 0.32 +1.3
428,521 - GFF2998 0.32 +0.7
428,565 + GFF2998 0.36 -0.1
428,565 + GFF2998 0.36 +0.6
428,565 + GFF2998 0.36 +0.5
428,565 + GFF2998 0.36 -0.4
428,566 - GFF2998 0.36 -0.6
428,566 - GFF2998 0.36 -0.3
428,566 - GFF2998 0.36 -0.1
428,566 - GFF2998 0.36 -0.3
428,566 - GFF2998 0.36 +0.6
428,608 - GFF2998 0.39 -0.5
428,619 + GFF2998 0.40 -0.5
428,619 + GFF2998 0.40 +0.0
428,620 - GFF2998 0.40 -1.4
428,620 - GFF2998 0.40 -0.4
428,620 - GFF2998 0.40 +0.6
428,640 + GFF2998 0.42 -1.9
428,640 + GFF2998 0.42 +0.3
428,640 + GFF2998 0.42 +0.1
428,640 + GFF2998 0.42 +0.7
428,641 - GFF2998 0.42 +0.2
428,641 - GFF2998 0.42 -0.3
428,641 - GFF2998 0.42 +0.7
428,641 - GFF2998 0.42 -0.2
428,643 + GFF2998 0.42 -0.2
428,643 + GFF2998 0.42 -0.4
428,643 + GFF2998 0.42 +0.9
428,644 - GFF2998 0.42 +0.9
428,736 + GFF2998 0.50 -1.2
428,736 + GFF2998 0.50 -0.1
428,736 + GFF2998 0.50 -0.7
428,736 + GFF2998 0.50 -1.4
428,737 - GFF2998 0.50 -0.3
428,737 - GFF2998 0.50 +0.2
428,737 - GFF2998 0.50 +0.4
428,737 - GFF2998 0.50 +0.2
428,737 - GFF2998 0.50 +0.3
428,737 - GFF2998 0.50 -0.5
428,742 + GFF2998 0.50 +0.6
428,742 + GFF2998 0.50 +0.6
428,742 + GFF2998 0.50 -0.2
428,742 + GFF2998 0.50 -1.2
428,844 + GFF2998 0.59 -0.8
428,844 + GFF2998 0.59 +0.0
428,844 + GFF2998 0.59 -0.7
428,844 + GFF2998 0.59 +0.0
428,844 + GFF2998 0.59 +0.2
428,844 + GFF2998 0.59 -1.0
428,844 + GFF2998 0.59 +0.4
428,844 + GFF2998 0.59 -0.8
428,845 - GFF2998 0.59 +1.0
428,845 - GFF2998 0.59 +1.0
428,845 - GFF2998 0.59 +0.0
428,845 - GFF2998 0.59 +0.1
428,845 - GFF2998 0.59 +1.3
428,845 - GFF2998 0.59 -1.2
428,845 - GFF2998 0.59 -0.4
428,845 - GFF2998 0.59 -0.2
428,845 - GFF2998 0.59 -0.9
428,845 - GFF2998 0.59 -0.7
428,845 - GFF2998 0.59 +0.5
428,845 - GFF2998 0.59 -1.6
428,904 + GFF2998 0.64 +1.6
428,905 - GFF2998 0.64 -0.1
429,270 - -0.2
429,338 + -1.1
429,339 - -1.3
429,343 + +0.8
429,343 + -0.7
429,343 + +0.1
429,343 + +1.2
429,343 + +0.1
429,343 + +1.1
429,343 + -0.7
429,343 + +0.6
429,343 + -0.5
429,344 - -0.5
429,344 - +0.1
429,344 - +0.0
429,344 - +0.4
429,344 - -1.0
429,654 + GFF2999 0.39 -0.4
429,654 + GFF2999 0.39 -0.8
429,654 + GFF2999 0.39 -0.5
429,654 + GFF2999 0.39 -0.4
429,654 + GFF2999 0.39 +1.6
429,654 + GFF2999 0.39 -0.1
429,654 + GFF2999 0.39 -1.1
429,654 + GFF2999 0.39 -0.2
429,654 + GFF2999 0.39 -1.2
429,654 + GFF2999 0.39 -0.9
429,654 + GFF2999 0.39 -0.3
429,654 + GFF2999 0.39 +0.2
429,654 + GFF2999 0.39 +0.6
429,654 + GFF2999 0.39 -0.2
429,654 + GFF2999 0.39 +1.0
429,655 - GFF2999 0.39 -1.0
429,655 - GFF2999 0.39 -0.4
429,655 - GFF2999 0.39 -0.9
429,655 - GFF2999 0.39 +0.2
429,655 - GFF2999 0.39 -1.1
429,655 - GFF2999 0.39 -0.0
429,655 - GFF2999 0.39 -0.3
429,655 - GFF2999 0.39 -0.8
429,655 - GFF2999 0.39 -1.0
429,655 - GFF2999 0.39 +0.0
429,655 - GFF2999 0.39 +1.6
429,655 - GFF2999 0.39 -1.4
429,655 - GFF2999 0.39 -1.6
429,655 - GFF2999 0.39 -0.9
429,655 - GFF2999 0.39 -2.7
429,655 - GFF2999 0.39 -0.3
429,655 - GFF2999 0.39 -0.5
429,655 - GFF2999 0.39 -0.2
429,655 - GFF2999 0.39 +1.1
429,660 + GFF2999 0.40 -0.5
429,660 + GFF2999 0.40 -1.0
429,661 - GFF2999 0.41 -2.4
429,661 - GFF2999 0.41 -2.1
429,661 - GFF2999 0.41 -0.6
429,661 - GFF2999 0.41 -0.4
429,661 - GFF2999 0.41 -0.4
429,690 + GFF2999 0.49 -2.5
429,691 - GFF2999 0.49 -0.5
429,691 - GFF2999 0.49 -0.6
429,691 - GFF2999 0.49 -0.9
429,931 - -1.4
429,931 - -0.9
429,931 - -1.4
429,931 - +0.2
429,956 + -0.7
430,445 + GFF3000 0.40 +1.2
430,719 - GFF3000 0.59 +0.4
430,719 - GFF3000 0.59 +0.1
430,719 - GFF3000 0.59 +0.1
430,719 - GFF3000 0.59 +0.5

Or see this region's nucleotide sequence