Strain Fitness in Variovorax sp. SCN45 around GFF282

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF281 and GFF282 are separated by 61 nucleotidesGFF282 and GFF283 overlap by 4 nucleotides GFF281 - Outer membrane porin protein 32 precursor, at 315,865 to 316,884 GFF281 GFF282 - hypothetical protein, at 316,946 to 318,133 GFF282 GFF283 - no description, at 318,130 to 319,224 GFF283 Position (kb) 316 317 318 319Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 316.207 kb on + strand, within GFF281at 316.208 kb on - strand, within GFF281at 316.348 kb on + strand, within GFF281at 316.348 kb on + strand, within GFF281at 316.349 kb on - strand, within GFF281at 316.379 kb on - strand, within GFF281at 316.426 kb on + strand, within GFF281at 316.447 kb on + strand, within GFF281at 316.447 kb on + strand, within GFF281at 316.447 kb on + strand, within GFF281at 316.447 kb on + strand, within GFF281at 316.448 kb on - strand, within GFF281at 316.480 kb on + strand, within GFF281at 316.480 kb on + strand, within GFF281at 316.481 kb on - strand, within GFF281at 316.481 kb on - strand, within GFF281at 316.537 kb on + strand, within GFF281at 316.537 kb on + strand, within GFF281at 316.537 kb on + strand, within GFF281at 316.537 kb on + strand, within GFF281at 316.538 kb on - strand, within GFF281at 316.538 kb on - strand, within GFF281at 316.538 kb on - strand, within GFF281at 316.538 kb on - strand, within GFF281at 316.561 kb on + strand, within GFF281at 316.561 kb on + strand, within GFF281at 316.561 kb on + strand, within GFF281at 316.561 kb on + strand, within GFF281at 316.561 kb on + strand, within GFF281at 316.562 kb on - strand, within GFF281at 316.562 kb on - strand, within GFF281at 316.562 kb on - strand, within GFF281at 316.562 kb on - strand, within GFF281at 316.570 kb on + strand, within GFF281at 316.570 kb on + strand, within GFF281at 316.571 kb on - strand, within GFF281at 316.571 kb on - strand, within GFF281at 316.571 kb on - strand, within GFF281at 316.726 kb on + strand, within GFF281at 316.726 kb on + strand, within GFF281at 316.727 kb on - strand, within GFF281at 316.727 kb on - strand, within GFF281at 316.727 kb on - strand, within GFF281at 316.759 kb on + strand, within GFF281at 316.759 kb on + strand, within GFF281at 316.759 kb on + strand, within GFF281at 316.760 kb on + strand, within GFF281at 316.760 kb on - strand, within GFF281at 316.760 kb on - strand, within GFF281at 316.760 kb on - strand, within GFF281at 316.801 kb on + strandat 316.801 kb on + strandat 316.801 kb on + strandat 316.802 kb on - strandat 316.802 kb on - strandat 316.802 kb on - strandat 316.802 kb on - strandat 316.802 kb on - strandat 316.808 kb on + strandat 316.897 kb on - strandat 316.897 kb on - strandat 317.040 kb on + strandat 317.040 kb on + strandat 317.041 kb on - strandat 317.041 kb on - strandat 317.220 kb on + strand, within GFF282at 317.220 kb on + strand, within GFF282at 317.220 kb on + strand, within GFF282at 317.220 kb on + strand, within GFF282at 317.220 kb on + strand, within GFF282at 317.220 kb on + strand, within GFF282at 317.220 kb on + strand, within GFF282at 317.220 kb on + strand, within GFF282at 317.220 kb on + strand, within GFF282at 317.220 kb on + strand, within GFF282at 317.221 kb on - strand, within GFF282at 317.221 kb on - strand, within GFF282at 317.316 kb on + strand, within GFF282at 317.317 kb on - strand, within GFF282at 317.352 kb on + strand, within GFF282at 317.352 kb on + strand, within GFF282at 317.352 kb on + strand, within GFF282at 317.352 kb on + strand, within GFF282at 317.352 kb on + strand, within GFF282at 317.352 kb on + strand, within GFF282at 317.353 kb on - strand, within GFF282at 317.353 kb on - strand, within GFF282at 317.353 kb on - strand, within GFF282at 317.425 kb on + strand, within GFF282at 317.613 kb on + strand, within GFF282at 317.613 kb on + strand, within GFF282at 317.614 kb on - strand, within GFF282at 317.614 kb on - strand, within GFF282at 317.673 kb on + strand, within GFF282at 317.673 kb on + strand, within GFF282at 317.673 kb on + strand, within GFF282at 317.674 kb on - strand, within GFF282at 317.697 kb on + strand, within GFF282at 317.698 kb on - strand, within GFF282at 317.698 kb on - strand, within GFF282at 317.698 kb on - strand, within GFF282at 317.698 kb on - strand, within GFF282at 317.999 kb on - strand, within GFF282at 317.999 kb on - strand, within GFF282at 318.081 kb on + strandat 318.081 kb on + strandat 318.081 kb on + strandat 318.081 kb on + strandat 318.082 kb on - strandat 318.082 kb on - strandat 318.082 kb on - strandat 318.164 kb on + strandat 318.164 kb on + strandat 318.165 kb on - strandat 318.165 kb on - strandat 318.224 kb on + strandat 318.224 kb on + strandat 318.224 kb on + strandat 318.224 kb on + strandat 318.224 kb on + strandat 318.225 kb on - strandat 318.225 kb on - strandat 318.225 kb on - strandat 318.318 kb on - strand, within GFF283at 318.642 kb on - strand, within GFF283at 318.686 kb on + strand, within GFF283at 318.687 kb on - strand, within GFF283at 318.932 kb on + strand, within GFF283at 319.064 kb on + strand, within GFF283at 319.064 kb on + strand, within GFF283at 319.065 kb on - strand, within GFF283

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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316,207 + GFF281 0.34 +0.2
316,208 - GFF281 0.34 -1.2
316,348 + GFF281 0.47 +0.0
316,348 + GFF281 0.47 +0.6
316,349 - GFF281 0.47 +0.8
316,379 - GFF281 0.50 -0.2
316,426 + GFF281 0.55 +1.4
316,447 + GFF281 0.57 -0.6
316,447 + GFF281 0.57 -1.4
316,447 + GFF281 0.57 -1.1
316,447 + GFF281 0.57 +0.4
316,448 - GFF281 0.57 +1.0
316,480 + GFF281 0.60 +0.0
316,480 + GFF281 0.60 +0.0
316,481 - GFF281 0.60 -0.4
316,481 - GFF281 0.60 -0.2
316,537 + GFF281 0.66 +0.5
316,537 + GFF281 0.66 -0.1
316,537 + GFF281 0.66 -0.2
316,537 + GFF281 0.66 -0.1
316,538 - GFF281 0.66 -0.4
316,538 - GFF281 0.66 +0.7
316,538 - GFF281 0.66 -1.2
316,538 - GFF281 0.66 -0.4
316,561 + GFF281 0.68 -1.3
316,561 + GFF281 0.68 -2.4
316,561 + GFF281 0.68 +2.1
316,561 + GFF281 0.68 +1.4
316,561 + GFF281 0.68 -0.4
316,562 - GFF281 0.68 -1.2
316,562 - GFF281 0.68 +0.7
316,562 - GFF281 0.68 +0.0
316,562 - GFF281 0.68 +0.2
316,570 + GFF281 0.69 +0.6
316,570 + GFF281 0.69 +1.4
316,571 - GFF281 0.69 +1.4
316,571 - GFF281 0.69 -0.7
316,571 - GFF281 0.69 -0.5
316,726 + GFF281 0.84 +1.6
316,726 + GFF281 0.84 -0.3
316,727 - GFF281 0.85 +1.0
316,727 - GFF281 0.85 -0.3
316,727 - GFF281 0.85 +0.4
316,759 + GFF281 0.88 -1.2
316,759 + GFF281 0.88 -1.3
316,759 + GFF281 0.88 +1.4
316,760 + GFF281 0.88 -0.6
316,760 - GFF281 0.88 -0.4
316,760 - GFF281 0.88 -0.2
316,760 - GFF281 0.88 -0.2
316,801 + +0.2
316,801 + -0.2
316,801 + -0.2
316,802 - -0.2
316,802 - -0.2
316,802 - -2.3
316,802 - +0.1
316,802 - -0.3
316,808 + -0.7
316,897 - +0.1
316,897 - -0.1
317,040 + -0.8
317,040 + +0.3
317,041 - -1.0
317,041 - +0.8
317,220 + GFF282 0.23 +1.5
317,220 + GFF282 0.23 -0.6
317,220 + GFF282 0.23 -0.3
317,220 + GFF282 0.23 +0.0
317,220 + GFF282 0.23 +0.6
317,220 + GFF282 0.23 +0.5
317,220 + GFF282 0.23 -0.8
317,220 + GFF282 0.23 -0.1
317,220 + GFF282 0.23 +0.7
317,220 + GFF282 0.23 -0.3
317,221 - GFF282 0.23 +0.4
317,221 - GFF282 0.23 -1.2
317,316 + GFF282 0.31 -0.1
317,317 - GFF282 0.31 +0.2
317,352 + GFF282 0.34 -1.8
317,352 + GFF282 0.34 +0.4
317,352 + GFF282 0.34 -0.1
317,352 + GFF282 0.34 +1.5
317,352 + GFF282 0.34 -0.4
317,352 + GFF282 0.34 -0.6
317,353 - GFF282 0.34 +0.4
317,353 - GFF282 0.34 +0.3
317,353 - GFF282 0.34 +1.8
317,425 + GFF282 0.40 -0.0
317,613 + GFF282 0.56 -1.0
317,613 + GFF282 0.56 +0.3
317,614 - GFF282 0.56 -0.5
317,614 - GFF282 0.56 -0.9
317,673 + GFF282 0.61 -0.1
317,673 + GFF282 0.61 -1.8
317,673 + GFF282 0.61 +0.6
317,674 - GFF282 0.61 +1.7
317,697 + GFF282 0.63 -1.5
317,698 - GFF282 0.63 +0.3
317,698 - GFF282 0.63 -0.0
317,698 - GFF282 0.63 -0.2
317,698 - GFF282 0.63 +0.0
317,999 - GFF282 0.89 +0.2
317,999 - GFF282 0.89 -0.4
318,081 + -0.2
318,081 + -1.0
318,081 + -0.2
318,081 + -0.5
318,082 - -0.9
318,082 - +0.4
318,082 - +0.7
318,164 + +0.4
318,164 + -0.5
318,165 - -0.4
318,165 - -0.8
318,224 + -0.4
318,224 + -0.7
318,224 + -0.2
318,224 + +0.2
318,224 + +0.2
318,225 - -0.1
318,225 - -1.4
318,225 - +0.0
318,318 - GFF283 0.17 -3.0
318,642 - GFF283 0.47 +1.4
318,686 + GFF283 0.51 -1.1
318,687 - GFF283 0.51 -2.8
318,932 + GFF283 0.73 +1.4
319,064 + GFF283 0.85 -0.1
319,064 + GFF283 0.85 -1.4
319,065 - GFF283 0.85 -1.2

Or see this region's nucleotide sequence