Strain Fitness in Variovorax sp. SCN45 around GFF2371

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2370 and GFF2371 are separated by 14 nucleotidesGFF2371 and GFF2372 are separated by 64 nucleotides GFF2370 - L-carnitine dehydratase/bile acid-inducible protein F, at 424,217 to 425,422 GFF2370 GFF2371 - BUG/TctC family periplasmic protein, at 425,437 to 426,432 GFF2371 GFF2372 - Similar to citrate lyase beta chain, 3, at 426,497 to 427,366 GFF2372 Position (kb) 425 426 427Strain fitness (log2 ratio) -2 -1 0 1at 424.638 kb on + strand, within GFF2370at 424.638 kb on + strand, within GFF2370at 424.638 kb on + strand, within GFF2370at 424.639 kb on - strand, within GFF2370at 424.639 kb on - strand, within GFF2370at 424.639 kb on - strand, within GFF2370at 424.639 kb on - strand, within GFF2370at 424.639 kb on - strand, within GFF2370at 424.639 kb on - strand, within GFF2370at 424.639 kb on - strand, within GFF2370at 424.639 kb on - strand, within GFF2370at 424.783 kb on - strand, within GFF2370at 424.783 kb on - strand, within GFF2370at 424.783 kb on - strand, within GFF2370at 424.812 kb on + strand, within GFF2370at 424.854 kb on + strand, within GFF2370at 424.876 kb on - strand, within GFF2370at 424.987 kb on - strand, within GFF2370at 424.987 kb on - strand, within GFF2370at 425.005 kb on - strand, within GFF2370at 425.005 kb on - strand, within GFF2370at 425.005 kb on - strand, within GFF2370at 425.005 kb on - strand, within GFF2370at 425.220 kb on + strand, within GFF2370at 425.220 kb on + strand, within GFF2370at 425.221 kb on - strand, within GFF2370at 425.298 kb on + strand, within GFF2370at 425.855 kb on + strand, within GFF2371at 425.855 kb on + strand, within GFF2371at 425.855 kb on + strand, within GFF2371at 425.855 kb on + strand, within GFF2371at 425.856 kb on - strand, within GFF2371at 425.945 kb on + strand, within GFF2371at 425.945 kb on + strand, within GFF2371at 425.945 kb on + strand, within GFF2371at 425.945 kb on + strand, within GFF2371at 425.945 kb on + strand, within GFF2371at 425.945 kb on + strand, within GFF2371at 425.945 kb on + strand, within GFF2371at 425.946 kb on - strand, within GFF2371at 425.946 kb on - strand, within GFF2371at 425.946 kb on - strand, within GFF2371at 425.951 kb on + strand, within GFF2371at 425.952 kb on - strand, within GFF2371at 425.952 kb on - strand, within GFF2371at 425.952 kb on - strand, within GFF2371at 426.146 kb on + strand, within GFF2371at 426.147 kb on - strand, within GFF2371at 426.169 kb on + strand, within GFF2371at 426.462 kb on + strandat 426.462 kb on + strandat 426.462 kb on + strandat 426.462 kb on + strandat 426.463 kb on - strandat 426.463 kb on - strandat 426.463 kb on - strandat 426.463 kb on - strandat 426.463 kb on - strandat 426.463 kb on - strandat 426.463 kb on - strandat 426.463 kb on - strandat 426.463 kb on - strandat 426.463 kb on - strandat 426.591 kb on + strand, within GFF2372at 426.592 kb on - strand, within GFF2372at 426.804 kb on + strand, within GFF2372at 426.810 kb on + strand, within GFF2372at 426.811 kb on - strand, within GFF2372at 427.291 kb on + strandat 427.292 kb on - strandat 427.292 kb on - strandat 427.292 kb on - strandat 427.292 kb on - strandat 427.413 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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424,638 + GFF2370 0.35 +0.7
424,638 + GFF2370 0.35 -0.1
424,638 + GFF2370 0.35 -0.8
424,639 - GFF2370 0.35 +0.1
424,639 - GFF2370 0.35 -1.6
424,639 - GFF2370 0.35 -0.4
424,639 - GFF2370 0.35 -0.7
424,639 - GFF2370 0.35 -0.7
424,639 - GFF2370 0.35 -1.3
424,639 - GFF2370 0.35 -0.8
424,639 - GFF2370 0.35 -1.2
424,783 - GFF2370 0.47 -0.7
424,783 - GFF2370 0.47 -0.1
424,783 - GFF2370 0.47 -1.9
424,812 + GFF2370 0.49 +1.1
424,854 + GFF2370 0.53 -1.4
424,876 - GFF2370 0.55 -1.7
424,987 - GFF2370 0.64 -0.3
424,987 - GFF2370 0.64 -1.1
425,005 - GFF2370 0.65 -1.3
425,005 - GFF2370 0.65 +0.4
425,005 - GFF2370 0.65 +0.0
425,005 - GFF2370 0.65 -0.6
425,220 + GFF2370 0.83 -1.4
425,220 + GFF2370 0.83 -0.4
425,221 - GFF2370 0.83 -0.6
425,298 + GFF2370 0.90 +0.1
425,855 + GFF2371 0.42 -0.8
425,855 + GFF2371 0.42 -0.5
425,855 + GFF2371 0.42 +0.6
425,855 + GFF2371 0.42 -0.2
425,856 - GFF2371 0.42 -1.4
425,945 + GFF2371 0.51 -2.5
425,945 + GFF2371 0.51 -0.1
425,945 + GFF2371 0.51 -1.7
425,945 + GFF2371 0.51 +0.3
425,945 + GFF2371 0.51 -0.6
425,945 + GFF2371 0.51 -0.2
425,945 + GFF2371 0.51 -1.6
425,946 - GFF2371 0.51 -1.4
425,946 - GFF2371 0.51 -1.6
425,946 - GFF2371 0.51 -1.0
425,951 + GFF2371 0.52 -0.3
425,952 - GFF2371 0.52 -0.4
425,952 - GFF2371 0.52 -1.6
425,952 - GFF2371 0.52 -0.8
426,146 + GFF2371 0.71 -0.1
426,147 - GFF2371 0.71 -0.2
426,169 + GFF2371 0.73 -0.5
426,462 + -0.8
426,462 + +0.2
426,462 + -1.1
426,462 + -0.1
426,463 - -0.7
426,463 - -0.7
426,463 - -0.4
426,463 - -0.4
426,463 - -0.5
426,463 - -0.9
426,463 - +0.4
426,463 - -0.6
426,463 - +1.7
426,463 - +0.2
426,591 + GFF2372 0.11 -1.7
426,592 - GFF2372 0.11 -2.1
426,804 + GFF2372 0.35 +0.1
426,810 + GFF2372 0.36 +0.7
426,811 - GFF2372 0.36 -1.5
427,291 + -0.5
427,292 - +1.7
427,292 - -0.5
427,292 - +0.6
427,292 - -0.6
427,413 + +0.6

Or see this region's nucleotide sequence