Strain Fitness in Variovorax sp. SCN45 around GFF1771

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1769 and GFF1770 are separated by 90 nucleotidesGFF1770 and GFF1771 overlap by 4 nucleotidesGFF1771 and GFF1772 are separated by 292 nucleotides GFF1769 - Urease accessory protein UreD, at 431,432 to 432,262 GFF1769 GFF1770 - cytidine/deoxycytidylate deaminase family protein, at 432,353 to 432,880 GFF1770 GFF1771 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 432,877 to 433,914 GFF1771 GFF1772 - Putative Rieske (2Fe-2S) family oxidoreductase, large subunit, at 434,207 to 435,289 GFF1772 Position (kb) 432 433 434Strain fitness (log2 ratio) -2 -1 0 1at 431.926 kb on - strand, within GFF1769at 431.926 kb on - strand, within GFF1769at 431.926 kb on - strand, within GFF1769at 431.926 kb on - strand, within GFF1769at 432.175 kb on + strand, within GFF1769at 432.176 kb on - strand, within GFF1769at 432.231 kb on + strandat 432.232 kb on - strandat 432.232 kb on - strandat 432.232 kb on - strandat 432.273 kb on + strandat 432.273 kb on + strandat 432.273 kb on + strandat 432.274 kb on - strandat 432.274 kb on - strandat 432.274 kb on - strandat 432.274 kb on - strandat 432.274 kb on - strandat 432.276 kb on + strandat 432.276 kb on + strandat 432.276 kb on + strandat 432.276 kb on + strandat 432.276 kb on + strandat 432.276 kb on + strandat 432.277 kb on - strandat 432.277 kb on - strandat 432.277 kb on - strandat 432.354 kb on + strandat 432.355 kb on - strandat 432.355 kb on - strandat 432.355 kb on - strandat 432.591 kb on + strand, within GFF1770at 432.591 kb on + strand, within GFF1770at 432.592 kb on - strand, within GFF1770at 432.592 kb on - strand, within GFF1770at 432.592 kb on - strand, within GFF1770at 432.592 kb on - strand, within GFF1770at 432.592 kb on - strand, within GFF1770at 432.846 kb on + strandat 432.846 kb on + strandat 433.012 kb on + strand, within GFF1771at 433.012 kb on + strand, within GFF1771at 433.014 kb on + strand, within GFF1771at 433.015 kb on - strand, within GFF1771at 433.015 kb on - strand, within GFF1771at 433.055 kb on + strand, within GFF1771at 433.055 kb on + strand, within GFF1771at 433.055 kb on + strand, within GFF1771at 433.056 kb on - strand, within GFF1771at 433.274 kb on + strand, within GFF1771at 433.274 kb on + strand, within GFF1771at 433.341 kb on - strand, within GFF1771at 433.571 kb on + strand, within GFF1771at 433.571 kb on + strand, within GFF1771at 433.571 kb on + strand, within GFF1771at 433.571 kb on + strand, within GFF1771at 433.572 kb on - strand, within GFF1771at 433.572 kb on - strand, within GFF1771at 433.574 kb on + strand, within GFF1771at 433.574 kb on + strand, within GFF1771at 433.574 kb on + strand, within GFF1771at 433.574 kb on + strand, within GFF1771at 433.574 kb on + strand, within GFF1771at 433.575 kb on - strand, within GFF1771at 433.575 kb on - strand, within GFF1771at 433.580 kb on + strand, within GFF1771at 433.661 kb on + strand, within GFF1771at 433.662 kb on - strand, within GFF1771at 433.713 kb on - strand, within GFF1771at 433.742 kb on + strand, within GFF1771at 433.742 kb on + strand, within GFF1771at 433.742 kb on + strand, within GFF1771at 433.743 kb on - strand, within GFF1771at 433.743 kb on - strand, within GFF1771at 433.743 kb on - strand, within GFF1771at 433.743 kb on - strand, within GFF1771at 433.746 kb on - strand, within GFF1771at 433.746 kb on - strand, within GFF1771at 433.746 kb on - strand, within GFF1771at 434.028 kb on + strandat 434.028 kb on + strandat 434.028 kb on + strandat 434.028 kb on + strandat 434.029 kb on - strandat 434.029 kb on - strandat 434.116 kb on + strandat 434.116 kb on + strandat 434.116 kb on + strandat 434.116 kb on + strandat 434.116 kb on + strandat 434.117 kb on - strandat 434.117 kb on - strandat 434.117 kb on - strandat 434.465 kb on + strand, within GFF1772at 434.466 kb on - strand, within GFF1772at 434.466 kb on - strand, within GFF1772at 434.491 kb on + strand, within GFF1772at 434.491 kb on + strand, within GFF1772at 434.502 kb on - strand, within GFF1772at 434.546 kb on + strand, within GFF1772at 434.546 kb on + strand, within GFF1772at 434.547 kb on - strand, within GFF1772at 434.570 kb on + strand, within GFF1772at 434.570 kb on + strand, within GFF1772at 434.570 kb on + strand, within GFF1772at 434.570 kb on + strand, within GFF1772at 434.571 kb on - strand, within GFF1772at 434.571 kb on - strand, within GFF1772at 434.571 kb on - strand, within GFF1772at 434.660 kb on + strand, within GFF1772at 434.660 kb on + strand, within GFF1772at 434.777 kb on + strand, within GFF1772at 434.777 kb on + strand, within GFF1772at 434.777 kb on + strand, within GFF1772at 434.778 kb on - strand, within GFF1772at 434.778 kb on - strand, within GFF1772at 434.778 kb on - strand, within GFF1772at 434.778 kb on - strand, within GFF1772at 434.778 kb on - strand, within GFF1772at 434.778 kb on - strand, within GFF1772at 434.778 kb on - strand, within GFF1772at 434.903 kb on + strand, within GFF1772at 434.903 kb on + strand, within GFF1772at 434.903 kb on + strand, within GFF1772at 434.903 kb on + strand, within GFF1772

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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431,926 - GFF1769 0.59 -0.6
431,926 - GFF1769 0.59 -0.4
431,926 - GFF1769 0.59 +0.9
431,926 - GFF1769 0.59 +0.0
432,175 + GFF1769 0.89 +0.1
432,176 - GFF1769 0.90 -1.2
432,231 + -0.3
432,232 - -0.1
432,232 - -1.0
432,232 - -0.1
432,273 + -1.2
432,273 + +0.2
432,273 + -0.1
432,274 - +0.0
432,274 - -0.4
432,274 - +0.0
432,274 - -0.9
432,274 - -1.2
432,276 + -0.8
432,276 + -0.1
432,276 + -0.5
432,276 + -0.3
432,276 + +0.4
432,276 + +0.5
432,277 - +0.5
432,277 - -0.0
432,277 - -0.1
432,354 + -0.6
432,355 - +0.6
432,355 - +0.8
432,355 - +0.9
432,591 + GFF1770 0.45 -1.1
432,591 + GFF1770 0.45 -2.2
432,592 - GFF1770 0.45 -0.6
432,592 - GFF1770 0.45 -1.0
432,592 - GFF1770 0.45 +0.2
432,592 - GFF1770 0.45 -0.9
432,592 - GFF1770 0.45 -1.8
432,846 + -1.0
432,846 + -1.2
433,012 + GFF1771 0.13 +0.8
433,012 + GFF1771 0.13 +0.2
433,014 + GFF1771 0.13 -0.6
433,015 - GFF1771 0.13 -1.5
433,015 - GFF1771 0.13 -1.9
433,055 + GFF1771 0.17 -0.5
433,055 + GFF1771 0.17 -1.8
433,055 + GFF1771 0.17 +0.4
433,056 - GFF1771 0.17 -0.6
433,274 + GFF1771 0.38 -0.4
433,274 + GFF1771 0.38 -0.3
433,341 - GFF1771 0.45 -0.1
433,571 + GFF1771 0.67 -1.2
433,571 + GFF1771 0.67 +1.7
433,571 + GFF1771 0.67 -0.2
433,571 + GFF1771 0.67 -0.5
433,572 - GFF1771 0.67 -0.3
433,572 - GFF1771 0.67 +0.9
433,574 + GFF1771 0.67 -0.1
433,574 + GFF1771 0.67 -1.5
433,574 + GFF1771 0.67 -0.4
433,574 + GFF1771 0.67 -0.2
433,574 + GFF1771 0.67 -0.9
433,575 - GFF1771 0.67 -1.8
433,575 - GFF1771 0.67 -1.1
433,580 + GFF1771 0.68 -1.5
433,661 + GFF1771 0.76 +0.1
433,662 - GFF1771 0.76 +1.1
433,713 - GFF1771 0.81 -0.0
433,742 + GFF1771 0.83 -0.5
433,742 + GFF1771 0.83 +1.4
433,742 + GFF1771 0.83 -0.8
433,743 - GFF1771 0.83 -0.3
433,743 - GFF1771 0.83 -0.2
433,743 - GFF1771 0.83 +0.0
433,743 - GFF1771 0.83 -0.9
433,746 - GFF1771 0.84 +0.9
433,746 - GFF1771 0.84 -0.3
433,746 - GFF1771 0.84 +1.7
434,028 + +0.7
434,028 + -1.1
434,028 + -2.4
434,028 + -0.3
434,029 - +0.0
434,029 - -0.4
434,116 + -0.0
434,116 + -0.0
434,116 + +0.2
434,116 + +0.7
434,116 + +0.2
434,117 - -0.9
434,117 - +0.7
434,117 - +0.4
434,465 + GFF1772 0.24 +0.5
434,466 - GFF1772 0.24 -0.3
434,466 - GFF1772 0.24 +0.5
434,491 + GFF1772 0.26 -0.3
434,491 + GFF1772 0.26 -0.6
434,502 - GFF1772 0.27 +0.1
434,546 + GFF1772 0.31 +0.1
434,546 + GFF1772 0.31 -0.8
434,547 - GFF1772 0.31 +1.0
434,570 + GFF1772 0.34 -0.4
434,570 + GFF1772 0.34 +0.5
434,570 + GFF1772 0.34 +0.5
434,570 + GFF1772 0.34 -1.3
434,571 - GFF1772 0.34 -1.1
434,571 - GFF1772 0.34 +0.2
434,571 - GFF1772 0.34 +0.0
434,660 + GFF1772 0.42 -0.5
434,660 + GFF1772 0.42 +0.6
434,777 + GFF1772 0.53 -0.4
434,777 + GFF1772 0.53 +0.1
434,777 + GFF1772 0.53 -0.4
434,778 - GFF1772 0.53 -1.7
434,778 - GFF1772 0.53 -0.5
434,778 - GFF1772 0.53 -0.6
434,778 - GFF1772 0.53 +1.0
434,778 - GFF1772 0.53 +0.4
434,778 - GFF1772 0.53 +0.7
434,778 - GFF1772 0.53 -0.6
434,903 + GFF1772 0.64 -0.3
434,903 + GFF1772 0.64 -0.6
434,903 + GFF1772 0.64 -0.3
434,903 + GFF1772 0.64 +0.2

Or see this region's nucleotide sequence