Strain Fitness in Variovorax sp. SCN45 around GFF1396

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1394 and GFF1395 are separated by 3 nucleotidesGFF1395 and GFF1396 are separated by 175 nucleotidesGFF1396 and GFF1397 are separated by 6 nucleotides GFF1394 - no description, at 742,517 to 743,341 GFF1394 GFF1395 - Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II, at 743,345 to 743,872 GFF1395 GFF1396 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 744,048 to 745,085 GFF1396 GFF1397 - TRAP-type C4-dicarboxylate transport system, large permease component, at 745,092 to 746,990 GFF1397 Position (kb) 744 745 746Strain fitness (log2 ratio) -2 -1 0 1at 743.076 kb on + strand, within GFF1394at 743.457 kb on + strand, within GFF1395at 743.457 kb on + strand, within GFF1395at 743.457 kb on + strand, within GFF1395at 743.457 kb on + strand, within GFF1395at 743.458 kb on - strand, within GFF1395at 743.458 kb on - strand, within GFF1395at 743.458 kb on - strand, within GFF1395at 743.458 kb on - strand, within GFF1395at 743.458 kb on - strand, within GFF1395at 743.577 kb on + strand, within GFF1395at 743.577 kb on + strand, within GFF1395at 743.578 kb on - strand, within GFF1395at 743.578 kb on - strand, within GFF1395at 743.578 kb on - strand, within GFF1395at 743.578 kb on - strand, within GFF1395at 743.578 kb on - strand, within GFF1395at 743.784 kb on + strand, within GFF1395at 743.784 kb on + strand, within GFF1395at 743.785 kb on - strand, within GFF1395at 743.785 kb on - strand, within GFF1395at 743.785 kb on - strand, within GFF1395at 743.785 kb on - strand, within GFF1395at 743.785 kb on - strand, within GFF1395at 743.785 kb on - strand, within GFF1395at 743.800 kb on - strand, within GFF1395at 743.830 kb on - strandat 743.830 kb on - strandat 743.891 kb on + strandat 743.925 kb on + strandat 743.925 kb on + strandat 743.925 kb on + strandat 743.934 kb on + strandat 743.935 kb on - strandat 744.133 kb on - strandat 744.274 kb on - strand, within GFF1396at 744.274 kb on - strand, within GFF1396at 744.408 kb on + strand, within GFF1396at 744.408 kb on + strand, within GFF1396at 744.423 kb on + strand, within GFF1396at 744.423 kb on + strand, within GFF1396at 744.423 kb on + strand, within GFF1396at 744.424 kb on - strand, within GFF1396at 744.424 kb on - strand, within GFF1396at 744.424 kb on - strand, within GFF1396at 744.424 kb on - strand, within GFF1396at 744.525 kb on + strand, within GFF1396at 744.543 kb on + strand, within GFF1396at 744.543 kb on + strand, within GFF1396at 744.543 kb on + strand, within GFF1396at 744.543 kb on + strand, within GFF1396at 744.543 kb on + strand, within GFF1396at 744.544 kb on - strand, within GFF1396at 744.544 kb on - strand, within GFF1396at 744.544 kb on - strand, within GFF1396at 744.675 kb on + strand, within GFF1396at 744.675 kb on + strand, within GFF1396at 744.675 kb on + strand, within GFF1396at 744.676 kb on - strand, within GFF1396at 744.676 kb on - strand, within GFF1396at 744.676 kb on - strand, within GFF1396at 744.676 kb on - strand, within GFF1396at 745.036 kb on - strandat 745.036 kb on - strandat 745.207 kb on - strandat 745.269 kb on + strandat 745.270 kb on - strandat 745.506 kb on + strand, within GFF1397at 745.506 kb on + strand, within GFF1397at 745.507 kb on - strand, within GFF1397at 745.507 kb on - strand, within GFF1397at 745.545 kb on + strand, within GFF1397at 745.545 kb on + strand, within GFF1397at 745.545 kb on + strand, within GFF1397at 745.545 kb on + strand, within GFF1397at 745.545 kb on + strand, within GFF1397at 745.545 kb on + strand, within GFF1397at 745.545 kb on + strand, within GFF1397at 745.545 kb on + strand, within GFF1397at 745.546 kb on - strand, within GFF1397at 745.546 kb on - strand, within GFF1397at 745.546 kb on - strand, within GFF1397at 745.546 kb on - strand, within GFF1397at 745.546 kb on - strand, within GFF1397at 745.546 kb on - strand, within GFF1397at 745.546 kb on - strand, within GFF1397at 745.546 kb on - strand, within GFF1397at 745.833 kb on + strand, within GFF1397at 745.866 kb on + strand, within GFF1397at 745.866 kb on + strand, within GFF1397at 745.866 kb on + strand, within GFF1397at 745.866 kb on + strand, within GFF1397at 745.866 kb on + strand, within GFF1397at 745.866 kb on + strand, within GFF1397at 745.867 kb on - strand, within GFF1397at 745.867 kb on - strand, within GFF1397at 745.867 kb on - strand, within GFF1397

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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743,076 + GFF1394 0.68 +0.2
743,457 + GFF1395 0.21 -0.8
743,457 + GFF1395 0.21 -1.3
743,457 + GFF1395 0.21 +0.1
743,457 + GFF1395 0.21 -0.0
743,458 - GFF1395 0.21 -1.1
743,458 - GFF1395 0.21 +0.7
743,458 - GFF1395 0.21 -0.0
743,458 - GFF1395 0.21 -0.7
743,458 - GFF1395 0.21 -0.1
743,577 + GFF1395 0.44 -0.0
743,577 + GFF1395 0.44 -0.2
743,578 - GFF1395 0.44 -1.7
743,578 - GFF1395 0.44 -0.2
743,578 - GFF1395 0.44 -0.9
743,578 - GFF1395 0.44 -0.7
743,578 - GFF1395 0.44 -0.1
743,784 + GFF1395 0.83 -0.9
743,784 + GFF1395 0.83 -0.4
743,785 - GFF1395 0.83 +0.8
743,785 - GFF1395 0.83 -0.1
743,785 - GFF1395 0.83 +0.0
743,785 - GFF1395 0.83 -0.3
743,785 - GFF1395 0.83 +0.9
743,785 - GFF1395 0.83 -0.1
743,800 - GFF1395 0.86 +0.2
743,830 - -0.9
743,830 - -0.3
743,891 + -0.6
743,925 + +0.2
743,925 + -1.2
743,925 + -0.8
743,934 + -1.9
743,935 - -0.2
744,133 - -0.0
744,274 - GFF1396 0.22 -0.5
744,274 - GFF1396 0.22 +0.7
744,408 + GFF1396 0.35 -0.2
744,408 + GFF1396 0.35 +0.3
744,423 + GFF1396 0.36 -0.9
744,423 + GFF1396 0.36 +0.1
744,423 + GFF1396 0.36 -1.2
744,424 - GFF1396 0.36 -0.2
744,424 - GFF1396 0.36 +0.6
744,424 - GFF1396 0.36 +1.0
744,424 - GFF1396 0.36 +0.7
744,525 + GFF1396 0.46 +0.3
744,543 + GFF1396 0.48 +0.4
744,543 + GFF1396 0.48 -0.0
744,543 + GFF1396 0.48 +0.4
744,543 + GFF1396 0.48 -0.4
744,543 + GFF1396 0.48 -0.6
744,544 - GFF1396 0.48 -1.8
744,544 - GFF1396 0.48 +0.0
744,544 - GFF1396 0.48 -1.3
744,675 + GFF1396 0.60 -0.2
744,675 + GFF1396 0.60 -0.0
744,675 + GFF1396 0.60 -0.2
744,676 - GFF1396 0.61 +0.6
744,676 - GFF1396 0.61 +0.4
744,676 - GFF1396 0.61 -0.1
744,676 - GFF1396 0.61 -0.0
745,036 - +1.0
745,036 - +0.1
745,207 - +0.2
745,269 + -0.8
745,270 - +0.4
745,506 + GFF1397 0.22 -0.3
745,506 + GFF1397 0.22 -0.9
745,507 - GFF1397 0.22 +0.4
745,507 - GFF1397 0.22 -2.1
745,545 + GFF1397 0.24 +0.4
745,545 + GFF1397 0.24 +1.4
745,545 + GFF1397 0.24 +0.2
745,545 + GFF1397 0.24 +1.1
745,545 + GFF1397 0.24 -0.3
745,545 + GFF1397 0.24 -0.6
745,545 + GFF1397 0.24 +0.2
745,545 + GFF1397 0.24 +0.3
745,546 - GFF1397 0.24 +0.8
745,546 - GFF1397 0.24 +0.3
745,546 - GFF1397 0.24 -0.7
745,546 - GFF1397 0.24 +0.6
745,546 - GFF1397 0.24 -0.9
745,546 - GFF1397 0.24 -0.7
745,546 - GFF1397 0.24 -0.1
745,546 - GFF1397 0.24 -0.2
745,833 + GFF1397 0.39 -0.1
745,866 + GFF1397 0.41 -0.7
745,866 + GFF1397 0.41 +0.6
745,866 + GFF1397 0.41 -1.5
745,866 + GFF1397 0.41 -0.3
745,866 + GFF1397 0.41 -0.0
745,866 + GFF1397 0.41 -0.2
745,867 - GFF1397 0.41 -1.0
745,867 - GFF1397 0.41 +0.8
745,867 - GFF1397 0.41 +0.0

Or see this region's nucleotide sequence