Strain Fitness in Variovorax sp. SCN45 around GFF1283

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1281 and GFF1282 are separated by 45 nucleotidesGFF1282 and GFF1283 are separated by 68 nucleotidesGFF1283 and GFF1284 are separated by 134 nucleotides GFF1281 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 609,847 to 610,578 GFF1281 GFF1282 - Chromate reductase (EC 1.6.5.2), at 610,624 to 611,178 GFF1282 GFF1283 - FMN-dependent NADH-azoreductase (EC 1.7.1.6), at 611,247 to 611,894 GFF1283 GFF1284 - Transcriptional regulator, LysR family, at 612,029 to 612,943 GFF1284 Position (kb) 611 612Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 610.363 kb on + strand, within GFF1281at 610.363 kb on + strand, within GFF1281at 610.363 kb on + strand, within GFF1281at 610.363 kb on + strand, within GFF1281at 610.363 kb on + strand, within GFF1281at 610.363 kb on + strand, within GFF1281at 610.363 kb on + strand, within GFF1281at 610.363 kb on + strand, within GFF1281at 610.364 kb on - strand, within GFF1281at 610.364 kb on - strand, within GFF1281at 610.364 kb on - strand, within GFF1281at 610.364 kb on - strand, within GFF1281at 610.364 kb on - strand, within GFF1281at 610.365 kb on + strand, within GFF1281at 610.365 kb on + strand, within GFF1281at 610.366 kb on - strand, within GFF1281at 610.366 kb on - strand, within GFF1281at 610.366 kb on - strand, within GFF1281at 610.426 kb on + strand, within GFF1281at 610.463 kb on - strand, within GFF1281at 610.463 kb on - strand, within GFF1281at 610.463 kb on - strand, within GFF1281at 610.463 kb on - strand, within GFF1281at 610.463 kb on - strand, within GFF1281at 610.675 kb on + strandat 610.675 kb on + strandat 610.675 kb on + strandat 610.675 kb on + strandat 610.675 kb on + strandat 610.676 kb on - strandat 610.676 kb on - strandat 610.676 kb on - strandat 610.762 kb on + strand, within GFF1282at 610.762 kb on + strand, within GFF1282at 610.763 kb on - strand, within GFF1282at 610.763 kb on - strand, within GFF1282at 610.763 kb on - strand, within GFF1282at 610.858 kb on + strand, within GFF1282at 610.858 kb on + strand, within GFF1282at 610.858 kb on + strand, within GFF1282at 610.859 kb on - strand, within GFF1282at 610.859 kb on - strand, within GFF1282at 610.859 kb on - strand, within GFF1282at 611.020 kb on + strand, within GFF1282at 611.020 kb on + strand, within GFF1282at 611.021 kb on - strand, within GFF1282at 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.147 kb on - strandat 611.147 kb on - strandat 611.147 kb on - strandat 611.147 kb on - strandat 611.147 kb on - strandat 611.147 kb on - strandat 611.419 kb on + strand, within GFF1283at 611.419 kb on + strand, within GFF1283at 611.419 kb on + strand, within GFF1283at 611.419 kb on + strand, within GFF1283at 611.419 kb on + strand, within GFF1283at 611.419 kb on + strand, within GFF1283at 611.419 kb on + strand, within GFF1283at 611.419 kb on + strand, within GFF1283at 611.419 kb on + strand, within GFF1283at 611.420 kb on - strand, within GFF1283at 611.420 kb on - strand, within GFF1283at 611.420 kb on - strand, within GFF1283at 611.420 kb on - strand, within GFF1283at 611.420 kb on - strand, within GFF1283at 611.420 kb on - strand, within GFF1283at 611.464 kb on + strand, within GFF1283at 611.465 kb on - strand, within GFF1283at 611.465 kb on - strand, within GFF1283at 611.465 kb on - strand, within GFF1283at 611.536 kb on + strand, within GFF1283at 611.537 kb on - strand, within GFF1283at 611.537 kb on - strand, within GFF1283at 611.608 kb on + strand, within GFF1283at 611.608 kb on + strand, within GFF1283at 611.608 kb on + strand, within GFF1283at 611.608 kb on + strand, within GFF1283at 611.608 kb on + strand, within GFF1283at 611.608 kb on + strand, within GFF1283at 611.609 kb on - strand, within GFF1283at 611.779 kb on + strand, within GFF1283at 611.779 kb on + strand, within GFF1283at 611.780 kb on - strand, within GFF1283at 611.979 kb on - strandat 612.221 kb on + strand, within GFF1284at 612.221 kb on + strand, within GFF1284at 612.221 kb on + strand, within GFF1284at 612.221 kb on + strand, within GFF1284at 612.221 kb on + strand, within GFF1284at 612.221 kb on + strand, within GFF1284at 612.221 kb on + strand, within GFF1284at 612.221 kb on + strand, within GFF1284at 612.222 kb on - strand, within GFF1284at 612.423 kb on + strand, within GFF1284at 612.512 kb on + strand, within GFF1284at 612.513 kb on - strand, within GFF1284at 612.693 kb on - strand, within GFF1284at 612.693 kb on - strand, within GFF1284at 612.764 kb on + strand, within GFF1284at 612.764 kb on + strand, within GFF1284at 612.764 kb on + strand, within GFF1284at 612.764 kb on + strand, within GFF1284at 612.764 kb on + strand, within GFF1284at 612.764 kb on + strand, within GFF1284at 612.764 kb on + strand, within GFF1284at 612.765 kb on - strand, within GFF1284at 612.765 kb on - strand, within GFF1284at 612.765 kb on - strand, within GFF1284at 612.765 kb on - strand, within GFF1284at 612.765 kb on - strand, within GFF1284at 612.765 kb on - strand, within GFF1284at 612.765 kb on - strand, within GFF1284at 612.765 kb on - strand, within GFF1284

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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610,363 + GFF1281 0.70 -0.9
610,363 + GFF1281 0.70 -1.2
610,363 + GFF1281 0.70 -0.1
610,363 + GFF1281 0.70 -0.7
610,363 + GFF1281 0.70 +0.2
610,363 + GFF1281 0.70 -0.3
610,363 + GFF1281 0.70 -0.4
610,363 + GFF1281 0.70 -0.0
610,364 - GFF1281 0.71 -1.5
610,364 - GFF1281 0.71 -0.7
610,364 - GFF1281 0.71 -0.0
610,364 - GFF1281 0.71 -0.2
610,364 - GFF1281 0.71 -0.8
610,365 + GFF1281 0.71 +0.4
610,365 + GFF1281 0.71 +0.7
610,366 - GFF1281 0.71 +0.1
610,366 - GFF1281 0.71 -1.0
610,366 - GFF1281 0.71 +0.2
610,426 + GFF1281 0.79 -0.9
610,463 - GFF1281 0.84 +0.8
610,463 - GFF1281 0.84 -0.3
610,463 - GFF1281 0.84 -0.1
610,463 - GFF1281 0.84 +0.4
610,463 - GFF1281 0.84 -0.2
610,675 + -0.8
610,675 + -0.4
610,675 + -0.1
610,675 + -1.1
610,675 + -0.1
610,676 - -0.0
610,676 - +0.3
610,676 - -0.2
610,762 + GFF1282 0.25 -1.2
610,762 + GFF1282 0.25 -0.1
610,763 - GFF1282 0.25 -0.4
610,763 - GFF1282 0.25 -1.9
610,763 - GFF1282 0.25 +0.4
610,858 + GFF1282 0.42 -0.1
610,858 + GFF1282 0.42 +0.3
610,858 + GFF1282 0.42 -1.6
610,859 - GFF1282 0.42 +0.1
610,859 - GFF1282 0.42 -0.5
610,859 - GFF1282 0.42 -0.5
611,020 + GFF1282 0.71 +0.7
611,020 + GFF1282 0.71 -1.1
611,021 - GFF1282 0.72 +0.7
611,146 + -0.2
611,146 + -1.1
611,146 + -0.7
611,146 + -0.6
611,146 + -1.4
611,146 + -0.1
611,146 + -0.7
611,146 + +1.2
611,146 + -0.2
611,146 + -0.8
611,146 + -0.8
611,146 + +1.4
611,146 + -2.3
611,146 + -0.7
611,146 + +0.1
611,146 + +1.6
611,147 - -0.0
611,147 - -0.5
611,147 - -0.3
611,147 - -1.8
611,147 - -0.9
611,147 - -0.3
611,419 + GFF1283 0.27 +0.3
611,419 + GFF1283 0.27 -0.2
611,419 + GFF1283 0.27 +0.3
611,419 + GFF1283 0.27 -1.1
611,419 + GFF1283 0.27 +0.4
611,419 + GFF1283 0.27 -0.6
611,419 + GFF1283 0.27 +0.8
611,419 + GFF1283 0.27 +0.3
611,419 + GFF1283 0.27 +2.0
611,420 - GFF1283 0.27 +0.8
611,420 - GFF1283 0.27 +1.2
611,420 - GFF1283 0.27 +0.2
611,420 - GFF1283 0.27 -1.2
611,420 - GFF1283 0.27 -0.8
611,420 - GFF1283 0.27 +0.6
611,464 + GFF1283 0.33 -0.4
611,465 - GFF1283 0.34 +0.6
611,465 - GFF1283 0.34 -0.3
611,465 - GFF1283 0.34 -0.1
611,536 + GFF1283 0.45 -1.8
611,537 - GFF1283 0.45 -0.0
611,537 - GFF1283 0.45 +1.1
611,608 + GFF1283 0.56 -0.4
611,608 + GFF1283 0.56 +0.1
611,608 + GFF1283 0.56 -3.1
611,608 + GFF1283 0.56 -0.2
611,608 + GFF1283 0.56 +0.6
611,608 + GFF1283 0.56 -3.1
611,609 - GFF1283 0.56 -1.1
611,779 + GFF1283 0.82 +0.0
611,779 + GFF1283 0.82 -1.2
611,780 - GFF1283 0.82 +0.9
611,979 - -2.4
612,221 + GFF1284 0.21 +0.1
612,221 + GFF1284 0.21 -0.1
612,221 + GFF1284 0.21 +0.4
612,221 + GFF1284 0.21 +1.0
612,221 + GFF1284 0.21 -0.3
612,221 + GFF1284 0.21 +0.5
612,221 + GFF1284 0.21 -0.4
612,221 + GFF1284 0.21 -0.5
612,222 - GFF1284 0.21 +0.1
612,423 + GFF1284 0.43 +0.2
612,512 + GFF1284 0.53 -0.8
612,513 - GFF1284 0.53 -0.4
612,693 - GFF1284 0.73 -0.1
612,693 - GFF1284 0.73 -0.4
612,764 + GFF1284 0.80 +0.7
612,764 + GFF1284 0.80 +0.1
612,764 + GFF1284 0.80 -0.8
612,764 + GFF1284 0.80 -1.4
612,764 + GFF1284 0.80 +0.2
612,764 + GFF1284 0.80 +1.3
612,764 + GFF1284 0.80 +0.4
612,765 - GFF1284 0.80 +0.8
612,765 - GFF1284 0.80 +0.4
612,765 - GFF1284 0.80 +0.4
612,765 - GFF1284 0.80 +1.4
612,765 - GFF1284 0.80 +0.1
612,765 - GFF1284 0.80 -0.0
612,765 - GFF1284 0.80 -0.3
612,765 - GFF1284 0.80 +0.0

Or see this region's nucleotide sequence