Experiment: Inulin from chicory 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS06765 and HMPREF1181_RS06770 are separated by 217 nucleotides HMPREF1181_RS06770 and HMPREF1181_RS06775 are separated by 4 nucleotides
HMPREF1181_RS06765: HMPREF1181_RS06765 - hypothetical protein, at 726,191 to 728,437
_RS06765
HMPREF1181_RS06770: HMPREF1181_RS06770 - hypothetical protein, at 728,655 to 729,272
_RS06770
HMPREF1181_RS06775: HMPREF1181_RS06775 - helix-turn-helix transcriptional regulator, at 729,277 to 730,134
_RS06775
Position (kb) 728
729
730 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 727.730 kb on - strand, within HMPREF1181_RS06765 at 727.731 kb on + strand, within HMPREF1181_RS06765 at 727.732 kb on - strand, within HMPREF1181_RS06765 at 727.732 kb on - strand, within HMPREF1181_RS06765 at 727.738 kb on + strand, within HMPREF1181_RS06765 at 728.114 kb on - strand, within HMPREF1181_RS06765 at 728.230 kb on + strand at 728.362 kb on + strand at 728.396 kb on + strand at 728.396 kb on + strand at 728.464 kb on - strand at 728.474 kb on + strand at 728.476 kb on + strand at 728.509 kb on + strand at 728.665 kb on - strand at 728.667 kb on - strand at 728.668 kb on + strand at 728.754 kb on + strand, within HMPREF1181_RS06770 at 728.755 kb on - strand, within HMPREF1181_RS06770 at 728.831 kb on + strand, within HMPREF1181_RS06770 at 728.832 kb on - strand, within HMPREF1181_RS06770 at 728.834 kb on - strand, within HMPREF1181_RS06770 at 728.906 kb on - strand, within HMPREF1181_RS06770 at 728.906 kb on - strand, within HMPREF1181_RS06770 at 729.002 kb on - strand, within HMPREF1181_RS06770 at 729.085 kb on + strand, within HMPREF1181_RS06770 at 729.086 kb on - strand, within HMPREF1181_RS06770 at 729.119 kb on - strand, within HMPREF1181_RS06770 at 729.174 kb on - strand, within HMPREF1181_RS06770 at 729.279 kb on - strand at 729.347 kb on + strand at 729.392 kb on - strand, within HMPREF1181_RS06775 at 729.556 kb on + strand, within HMPREF1181_RS06775 at 729.691 kb on - strand, within HMPREF1181_RS06775 at 729.796 kb on - strand, within HMPREF1181_RS06775 at 729.824 kb on + strand, within HMPREF1181_RS06775 at 729.954 kb on + strand, within HMPREF1181_RS06775 at 730.121 kb on + strand at 730.153 kb on + strand at 730.153 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Inulin from chicory 2.5 mg/ml (C) remove 727,730 - HMPREF1181_RS06765 0.68 +0.0 727,731 + HMPREF1181_RS06765 0.69 +0.7 727,732 - HMPREF1181_RS06765 0.69 +0.5 727,732 - HMPREF1181_RS06765 0.69 +0.7 727,738 + HMPREF1181_RS06765 0.69 -0.7 728,114 - HMPREF1181_RS06765 0.86 -0.2 728,230 + -0.8 728,362 + +1.0 728,396 + +0.1 728,396 + -0.7 728,464 - +2.3 728,474 + +0.4 728,476 + -0.8 728,509 + +0.8 728,665 - +2.2 728,667 - +2.0 728,668 + +0.3 728,754 + HMPREF1181_RS06770 0.16 +1.6 728,755 - HMPREF1181_RS06770 0.16 +2.1 728,831 + HMPREF1181_RS06770 0.28 +1.7 728,832 - HMPREF1181_RS06770 0.29 +0.2 728,834 - HMPREF1181_RS06770 0.29 +0.3 728,906 - HMPREF1181_RS06770 0.41 +1.5 728,906 - HMPREF1181_RS06770 0.41 -0.4 729,002 - HMPREF1181_RS06770 0.56 +0.9 729,085 + HMPREF1181_RS06770 0.70 +0.7 729,086 - HMPREF1181_RS06770 0.70 +1.7 729,119 - HMPREF1181_RS06770 0.75 +0.4 729,174 - HMPREF1181_RS06770 0.84 +0.3 729,279 - -0.4 729,347 + -0.8 729,392 - HMPREF1181_RS06775 0.13 -3.4 729,556 + HMPREF1181_RS06775 0.33 -0.6 729,691 - HMPREF1181_RS06775 0.48 -1.8 729,796 - HMPREF1181_RS06775 0.60 +0.4 729,824 + HMPREF1181_RS06775 0.64 +0.4 729,954 + HMPREF1181_RS06775 0.79 -0.9 730,121 + -0.4 730,153 + -0.7 730,153 + +0.1
Or see this region's nucleotide sequence