Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7271 and GFF7272 are separated by 19 nucleotides GFF7272 and GFF7273 are separated by 367 nucleotides
GFF7271 - Transcriptional regulator, LacI family, at 19,913 to 20,887
GFF7271
GFF7272 - D-glucarate permease, at 20,907 to 22,256
GFF7272
GFF7273 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 22,624 to 23,481
GFF7273
Position (kb) 20
21
22
23 Strain fitness (log2 ratio) -2
-1
0
1 at 20.036 kb on + strand, within GFF7271 at 20.037 kb on - strand, within GFF7271 at 20.182 kb on - strand, within GFF7271 at 20.182 kb on - strand, within GFF7271 at 20.182 kb on - strand, within GFF7271 at 20.226 kb on + strand, within GFF7271 at 20.226 kb on + strand, within GFF7271 at 20.226 kb on + strand, within GFF7271 at 20.227 kb on - strand, within GFF7271 at 20.227 kb on - strand, within GFF7271 at 20.725 kb on + strand, within GFF7271 at 20.731 kb on + strand, within GFF7271 at 20.731 kb on + strand, within GFF7271 at 20.913 kb on + strand at 20.914 kb on - strand at 21.007 kb on + strand at 21.007 kb on + strand at 21.055 kb on + strand, within GFF7272 at 21.055 kb on + strand, within GFF7272 at 21.055 kb on + strand, within GFF7272 at 21.056 kb on - strand, within GFF7272 at 21.071 kb on + strand, within GFF7272 at 21.469 kb on + strand, within GFF7272 at 21.469 kb on + strand, within GFF7272 at 21.469 kb on + strand, within GFF7272 at 21.469 kb on + strand, within GFF7272 at 21.470 kb on - strand, within GFF7272 at 21.470 kb on - strand, within GFF7272 at 21.470 kb on - strand, within GFF7272 at 21.517 kb on + strand, within GFF7272 at 21.518 kb on - strand, within GFF7272 at 21.518 kb on - strand, within GFF7272 at 21.518 kb on - strand, within GFF7272 at 21.703 kb on + strand, within GFF7272 at 21.704 kb on - strand, within GFF7272 at 21.818 kb on - strand, within GFF7272 at 21.818 kb on - strand, within GFF7272 at 22.087 kb on + strand, within GFF7272 at 22.087 kb on + strand, within GFF7272 at 22.088 kb on - strand, within GFF7272 at 22.250 kb on + strand at 22.250 kb on + strand at 22.251 kb on - strand at 22.449 kb on - strand at 22.659 kb on - strand at 22.939 kb on + strand, within GFF7273 at 22.940 kb on - strand, within GFF7273 at 23.080 kb on + strand, within GFF7273 at 23.081 kb on - strand, within GFF7273 at 23.081 kb on - strand, within GFF7273 at 23.081 kb on - strand, within GFF7273
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 20,036 + GFF7271 0.13 +0.4 20,037 - GFF7271 0.13 +0.3 20,182 - GFF7271 0.28 +0.3 20,182 - GFF7271 0.28 +0.2 20,182 - GFF7271 0.28 -0.8 20,226 + GFF7271 0.32 -0.9 20,226 + GFF7271 0.32 +0.3 20,226 + GFF7271 0.32 -0.5 20,227 - GFF7271 0.32 +0.3 20,227 - GFF7271 0.32 +0.2 20,725 + GFF7271 0.83 +0.1 20,731 + GFF7271 0.84 -0.4 20,731 + GFF7271 0.84 -2.3 20,913 + -0.9 20,914 - -0.0 21,007 + -0.4 21,007 + -1.0 21,055 + GFF7272 0.11 -1.1 21,055 + GFF7272 0.11 -1.0 21,055 + GFF7272 0.11 -0.9 21,056 - GFF7272 0.11 -0.1 21,071 + GFF7272 0.12 +0.3 21,469 + GFF7272 0.42 +0.6 21,469 + GFF7272 0.42 -1.6 21,469 + GFF7272 0.42 -1.0 21,469 + GFF7272 0.42 -0.3 21,470 - GFF7272 0.42 +0.0 21,470 - GFF7272 0.42 -1.6 21,470 - GFF7272 0.42 -0.9 21,517 + GFF7272 0.45 -0.4 21,518 - GFF7272 0.45 -0.2 21,518 - GFF7272 0.45 -0.5 21,518 - GFF7272 0.45 +0.2 21,703 + GFF7272 0.59 -0.2 21,704 - GFF7272 0.59 +0.5 21,818 - GFF7272 0.67 -0.8 21,818 - GFF7272 0.67 +0.2 22,087 + GFF7272 0.87 +0.4 22,087 + GFF7272 0.87 -1.1 22,088 - GFF7272 0.87 -0.3 22,250 + +0.0 22,250 + +0.5 22,251 - +0.0 22,449 - -0.8 22,659 - -0.4 22,939 + GFF7273 0.37 -0.1 22,940 - GFF7273 0.37 +1.0 23,080 + GFF7273 0.53 +0.7 23,081 - GFF7273 0.53 -0.4 23,081 - GFF7273 0.53 +0.1 23,081 - GFF7273 0.53 -0.2
Or see this region's nucleotide sequence