Strain Fitness in Variovorax sp. SCN45 around GFF6917

Experiment: M9 with calcium pantothenate 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF6915 and GFF6916 are separated by 17 nucleotidesGFF6916 and GFF6917 are separated by 84 nucleotidesGFF6917 and GFF6918 are separated by 160 nucleotides GFF6915 - Alkyl hydroperoxide reductase and/or thiol-specific antioxidant family (AhpC/TSA) protein, at 52,246 to 52,938 GFF6915 GFF6916 - Methyltransferase type 11, at 52,956 to 53,561 GFF6916 GFF6917 - Uncharacterized MFS-type transporter, at 53,646 to 54,986 GFF6917 GFF6918 - Transcriptional regulator, AraC family, at 55,147 to 56,130 GFF6918 Position (kb) 53 54 55Strain fitness (log2 ratio) -2 -1 0 1 2 3at 52.723 kb on + strand, within GFF6915at 52.723 kb on + strand, within GFF6915at 52.723 kb on + strand, within GFF6915at 52.723 kb on + strand, within GFF6915at 52.724 kb on - strand, within GFF6915at 52.724 kb on - strand, within GFF6915at 52.750 kb on + strand, within GFF6915at 52.750 kb on + strand, within GFF6915at 52.780 kb on + strand, within GFF6915at 52.780 kb on + strand, within GFF6915at 52.781 kb on - strand, within GFF6915at 52.781 kb on - strand, within GFF6915at 52.843 kb on + strand, within GFF6915at 52.843 kb on + strand, within GFF6915at 52.843 kb on + strand, within GFF6915at 52.843 kb on + strand, within GFF6915at 52.843 kb on + strand, within GFF6915at 52.843 kb on + strand, within GFF6915at 52.843 kb on + strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.927 kb on + strandat 52.927 kb on + strandat 52.927 kb on + strandat 52.927 kb on + strandat 52.927 kb on + strandat 52.927 kb on + strandat 52.927 kb on + strandat 52.928 kb on - strandat 52.928 kb on - strandat 52.928 kb on - strandat 52.928 kb on - strandat 52.928 kb on - strandat 52.928 kb on - strandat 52.928 kb on - strandat 52.928 kb on - strandat 52.928 kb on - strandat 53.016 kb on + strandat 53.016 kb on + strandat 53.016 kb on + strandat 53.016 kb on + strandat 53.017 kb on - strand, within GFF6916at 53.017 kb on - strand, within GFF6916at 53.431 kb on + strand, within GFF6916at 53.432 kb on - strand, within GFF6916at 53.432 kb on - strand, within GFF6916at 53.566 kb on + strandat 53.566 kb on + strandat 53.566 kb on + strandat 53.566 kb on + strandat 53.566 kb on + strandat 53.566 kb on + strandat 53.566 kb on + strandat 53.567 kb on - strandat 53.567 kb on - strandat 53.567 kb on - strandat 53.567 kb on - strandat 53.567 kb on - strandat 53.567 kb on - strandat 53.567 kb on - strandat 53.567 kb on - strandat 53.609 kb on - strandat 53.609 kb on - strandat 53.787 kb on + strand, within GFF6917at 53.787 kb on + strand, within GFF6917at 53.787 kb on + strand, within GFF6917at 53.788 kb on - strand, within GFF6917at 53.788 kb on - strand, within GFF6917at 53.788 kb on - strand, within GFF6917at 53.788 kb on - strand, within GFF6917at 53.913 kb on + strand, within GFF6917at 53.913 kb on + strand, within GFF6917at 53.913 kb on + strand, within GFF6917at 53.913 kb on + strand, within GFF6917at 53.913 kb on + strand, within GFF6917at 53.913 kb on + strand, within GFF6917at 53.913 kb on + strand, within GFF6917at 53.913 kb on + strand, within GFF6917at 53.913 kb on + strand, within GFF6917at 53.914 kb on - strand, within GFF6917at 53.914 kb on - strand, within GFF6917at 53.914 kb on - strand, within GFF6917at 54.003 kb on + strand, within GFF6917at 54.003 kb on + strand, within GFF6917at 54.004 kb on - strand, within GFF6917at 54.004 kb on - strand, within GFF6917at 54.004 kb on - strand, within GFF6917at 54.004 kb on - strand, within GFF6917at 54.004 kb on - strand, within GFF6917at 54.004 kb on - strand, within GFF6917at 54.099 kb on + strand, within GFF6917at 54.099 kb on + strand, within GFF6917at 54.099 kb on + strand, within GFF6917at 54.099 kb on + strand, within GFF6917at 54.100 kb on - strand, within GFF6917at 54.100 kb on - strand, within GFF6917at 54.100 kb on - strand, within GFF6917at 54.100 kb on - strand, within GFF6917at 54.100 kb on - strand, within GFF6917at 54.100 kb on - strand, within GFF6917at 54.138 kb on + strand, within GFF6917at 54.139 kb on - strand, within GFF6917at 54.139 kb on - strand, within GFF6917at 54.139 kb on - strand, within GFF6917at 54.139 kb on - strand, within GFF6917at 54.139 kb on - strand, within GFF6917at 54.139 kb on - strand, within GFF6917at 54.139 kb on - strand, within GFF6917at 54.139 kb on - strand, within GFF6917at 54.244 kb on - strand, within GFF6917at 54.244 kb on - strand, within GFF6917at 54.244 kb on - strand, within GFF6917at 54.441 kb on + strand, within GFF6917at 54.441 kb on + strand, within GFF6917at 54.441 kb on + strand, within GFF6917at 54.442 kb on - strand, within GFF6917at 54.456 kb on + strand, within GFF6917at 54.456 kb on + strand, within GFF6917at 54.456 kb on + strand, within GFF6917at 54.457 kb on - strand, within GFF6917at 54.457 kb on - strand, within GFF6917at 54.711 kb on + strand, within GFF6917at 54.720 kb on + strand, within GFF6917at 54.720 kb on + strand, within GFF6917at 54.720 kb on + strand, within GFF6917at 54.721 kb on - strand, within GFF6917at 54.721 kb on - strand, within GFF6917at 54.721 kb on - strand, within GFF6917at 54.795 kb on + strand, within GFF6917at 54.795 kb on + strand, within GFF6917at 54.796 kb on - strand, within GFF6917at 54.796 kb on - strand, within GFF6917at 55.102 kb on + strandat 55.142 kb on + strandat 55.143 kb on - strandat 55.143 kb on - strandat 55.143 kb on - strandat 55.225 kb on + strandat 55.225 kb on + strandat 55.225 kb on + strandat 55.225 kb on + strandat 55.225 kb on + strandat 55.225 kb on + strandat 55.226 kb on - strandat 55.226 kb on - strandat 55.226 kb on - strandat 55.288 kb on + strand, within GFF6918at 55.288 kb on + strand, within GFF6918at 55.288 kb on + strand, within GFF6918at 55.289 kb on - strand, within GFF6918at 55.384 kb on + strand, within GFF6918at 55.384 kb on + strand, within GFF6918at 55.384 kb on + strand, within GFF6918at 55.384 kb on + strand, within GFF6918at 55.385 kb on - strand, within GFF6918at 55.385 kb on - strand, within GFF6918at 55.385 kb on - strand, within GFF6918at 55.385 kb on - strand, within GFF6918at 55.471 kb on + strand, within GFF6918at 55.472 kb on - strand, within GFF6918at 55.472 kb on - strand, within GFF6918at 55.615 kb on + strand, within GFF6918at 55.615 kb on + strand, within GFF6918at 55.616 kb on - strand, within GFF6918at 55.874 kb on - strand, within GFF6918at 55.874 kb on - strand, within GFF6918

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
remove
52,723 + GFF6915 0.69 +0.3
52,723 + GFF6915 0.69 -1.2
52,723 + GFF6915 0.69 -1.5
52,723 + GFF6915 0.69 +0.1
52,724 - GFF6915 0.69 +0.3
52,724 - GFF6915 0.69 -1.4
52,750 + GFF6915 0.73 +0.8
52,750 + GFF6915 0.73 -0.1
52,780 + GFF6915 0.77 -0.6
52,780 + GFF6915 0.77 -0.2
52,781 - GFF6915 0.77 -0.9
52,781 - GFF6915 0.77 -0.2
52,843 + GFF6915 0.86 -0.3
52,843 + GFF6915 0.86 +0.8
52,843 + GFF6915 0.86 -0.1
52,843 + GFF6915 0.86 +0.5
52,843 + GFF6915 0.86 -0.3
52,843 + GFF6915 0.86 -1.5
52,843 + GFF6915 0.86 -0.2
52,844 - GFF6915 0.86 +0.5
52,844 - GFF6915 0.86 +1.4
52,844 - GFF6915 0.86 +0.4
52,844 - GFF6915 0.86 -0.1
52,844 - GFF6915 0.86 +0.5
52,844 - GFF6915 0.86 -1.5
52,844 - GFF6915 0.86 -0.4
52,844 - GFF6915 0.86 +0.7
52,844 - GFF6915 0.86 +0.4
52,844 - GFF6915 0.86 +0.5
52,844 - GFF6915 0.86 -1.1
52,927 + +0.8
52,927 + +1.6
52,927 + -0.3
52,927 + -0.8
52,927 + -0.7
52,927 + -0.3
52,927 + +1.1
52,928 - -2.3
52,928 - -0.5
52,928 - -0.0
52,928 - +0.1
52,928 - +0.3
52,928 - -0.5
52,928 - -0.4
52,928 - -0.9
52,928 - -0.1
53,016 + -2.2
53,016 + -1.2
53,016 + +0.6
53,016 + +1.3
53,017 - GFF6916 0.10 -0.5
53,017 - GFF6916 0.10 -0.1
53,431 + GFF6916 0.78 -0.9
53,432 - GFF6916 0.79 -0.4
53,432 - GFF6916 0.79 +0.2
53,566 + +0.3
53,566 + +0.5
53,566 + -1.1
53,566 + +3.4
53,566 + -0.2
53,566 + -0.6
53,566 + +0.3
53,567 - -2.5
53,567 - +0.5
53,567 - +1.7
53,567 - +0.1
53,567 - -0.5
53,567 - -0.8
53,567 - +0.1
53,567 - -1.3
53,609 - -0.2
53,609 - -0.7
53,787 + GFF6917 0.11 -0.3
53,787 + GFF6917 0.11 +0.1
53,787 + GFF6917 0.11 -0.5
53,788 - GFF6917 0.11 -0.1
53,788 - GFF6917 0.11 -0.2
53,788 - GFF6917 0.11 -0.5
53,788 - GFF6917 0.11 +0.1
53,913 + GFF6917 0.20 +0.0
53,913 + GFF6917 0.20 -0.2
53,913 + GFF6917 0.20 -2.4
53,913 + GFF6917 0.20 -1.8
53,913 + GFF6917 0.20 -0.9
53,913 + GFF6917 0.20 +0.0
53,913 + GFF6917 0.20 -0.6
53,913 + GFF6917 0.20 -1.4
53,913 + GFF6917 0.20 -0.4
53,914 - GFF6917 0.20 -0.1
53,914 - GFF6917 0.20 +1.1
53,914 - GFF6917 0.20 +1.0
54,003 + GFF6917 0.27 +0.1
54,003 + GFF6917 0.27 -0.5
54,004 - GFF6917 0.27 +0.2
54,004 - GFF6917 0.27 -0.5
54,004 - GFF6917 0.27 -0.5
54,004 - GFF6917 0.27 -1.7
54,004 - GFF6917 0.27 -1.8
54,004 - GFF6917 0.27 +0.8
54,099 + GFF6917 0.34 -0.5
54,099 + GFF6917 0.34 -0.6
54,099 + GFF6917 0.34 +0.3
54,099 + GFF6917 0.34 -1.2
54,100 - GFF6917 0.34 +0.2
54,100 - GFF6917 0.34 -0.1
54,100 - GFF6917 0.34 -0.4
54,100 - GFF6917 0.34 -0.3
54,100 - GFF6917 0.34 -0.2
54,100 - GFF6917 0.34 +0.7
54,138 + GFF6917 0.37 -0.6
54,139 - GFF6917 0.37 -0.3
54,139 - GFF6917 0.37 -0.6
54,139 - GFF6917 0.37 -0.5
54,139 - GFF6917 0.37 +0.1
54,139 - GFF6917 0.37 -0.1
54,139 - GFF6917 0.37 -0.9
54,139 - GFF6917 0.37 -0.9
54,139 - GFF6917 0.37 +0.1
54,244 - GFF6917 0.45 -0.8
54,244 - GFF6917 0.45 -0.1
54,244 - GFF6917 0.45 -0.8
54,441 + GFF6917 0.59 +1.0
54,441 + GFF6917 0.59 -0.3
54,441 + GFF6917 0.59 -1.1
54,442 - GFF6917 0.59 -0.4
54,456 + GFF6917 0.60 -0.6
54,456 + GFF6917 0.60 -0.3
54,456 + GFF6917 0.60 -0.2
54,457 - GFF6917 0.60 -0.7
54,457 - GFF6917 0.60 +0.3
54,711 + GFF6917 0.79 -1.1
54,720 + GFF6917 0.80 -0.2
54,720 + GFF6917 0.80 -0.4
54,720 + GFF6917 0.80 -0.6
54,721 - GFF6917 0.80 +0.0
54,721 - GFF6917 0.80 -0.2
54,721 - GFF6917 0.80 -0.4
54,795 + GFF6917 0.86 -0.4
54,795 + GFF6917 0.86 -0.9
54,796 - GFF6917 0.86 +1.5
54,796 - GFF6917 0.86 -2.7
55,102 + +0.1
55,142 + -2.4
55,143 - -1.6
55,143 - -0.2
55,143 - -0.5
55,225 + -0.9
55,225 + +0.2
55,225 + +0.5
55,225 + +0.1
55,225 + +0.6
55,225 + +0.5
55,226 - +0.2
55,226 - -0.2
55,226 - -0.4
55,288 + GFF6918 0.14 +0.3
55,288 + GFF6918 0.14 -0.2
55,288 + GFF6918 0.14 +0.5
55,289 - GFF6918 0.14 -0.3
55,384 + GFF6918 0.24 -0.3
55,384 + GFF6918 0.24 +0.8
55,384 + GFF6918 0.24 -0.5
55,384 + GFF6918 0.24 +0.4
55,385 - GFF6918 0.24 +1.6
55,385 - GFF6918 0.24 -0.1
55,385 - GFF6918 0.24 -1.0
55,385 - GFF6918 0.24 +0.8
55,471 + GFF6918 0.33 -1.3
55,472 - GFF6918 0.33 -1.3
55,472 - GFF6918 0.33 +0.4
55,615 + GFF6918 0.48 -2.0
55,615 + GFF6918 0.48 -0.4
55,616 - GFF6918 0.48 -0.3
55,874 - GFF6918 0.74 +0.0
55,874 - GFF6918 0.74 +0.0

Or see this region's nucleotide sequence