Strain Fitness in Variovorax sp. SCN45 around GFF6442

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
17,007	+				-1.2
17,062	+		GFF6440	0.20	-0.8
17,062	+		GFF6440	0.20	-0.8
17,062	+		GFF6440	0.20	+0.2
17,296	+				+0.2
17,300	+				+0.0
17,300	+				+0.4
17,300	+				-0.2
17,300	+				+0.2
17,300	+				-0.0
17,300	+				-1.5
17,301	-				+0.2
17,301	-				+1.2
17,301	-				-0.2
17,301	-				-0.5
17,301	-				-1.8
17,301	-				-1.0
17,301	-				+0.2
17,301	-				+0.8
17,301	-				-0.2
17,470	+		GFF6441	0.46	-0.8
17,471	-		GFF6441	0.47	+0.4
17,539	+		GFF6441	0.65	+0.3
17,700	+				-0.9
17,730	+				-1.6
17,731	-				+0.3
17,781	+				-3.1
17,817	+				-0.4
17,817	-				+0.4
17,818	-				-0.8
17,818	-				+2.1
17,911	-		GFF6442	0.16	-1.3
17,911	-		GFF6442	0.16	+0.1
18,042	+		GFF6442	0.24	-0.3
18,042	+		GFF6442	0.24	-1.8
18,043	-		GFF6442	0.24	+0.7
18,043	-		GFF6442	0.24	-0.7
18,043	-		GFF6442	0.24	-0.8
18,130	-		GFF6442	0.30	-0.4
18,130	-		GFF6442	0.30	+1.2
18,252	+		GFF6442	0.38	+0.2
18,441	+		GFF6442	0.51	+0.1
18,653	+		GFF6442	0.64	+1.8
18,747	+		GFF6442	0.71	-0.3
18,747	+		GFF6442	0.71	-0.8
18,748	-		GFF6442	0.71	-0.3
18,813	+		GFF6442	0.75	-0.5
18,813	+		GFF6442	0.75	+0.2
19,089	+				+0.2
19,089	+				-0.6
19,090	-				+0.2
19,090	-				-0.4
19,090	-				-0.1
19,090	-				-0.0
19,090	-				-0.5
19,128	+				-0.2
19,128	+				-0.2
19,128	+				-0.8
19,128	+				-0.0
19,128	+				-0.4
19,128	+				-0.2
19,128	+				+0.8
19,128	+				-1.2
19,129	-				-1.2
19,129	-				-0.4
19,129	-				+0.8
19,137	+				+0.1
19,138	-				-1.0
19,262	+		GFF6443	0.38	-0.5
19,263	-		GFF6443	0.39	-0.2
19,263	-		GFF6443	0.39	-0.2
19,291	+		GFF6443	0.55	+1.4
19,291	+		GFF6443	0.55	-0.5
19,361	-				-0.6
19,367	+				-1.3
19,367	+				+0.3
19,368	-				-0.9
19,368	-				-1.2
19,559	+				+1.2
19,559	+				-1.6
19,559	+				-1.2
19,559	+				-0.4
19,559	+				-1.3
19,559	+				-0.2
19,559	+				-0.4
19,560	-				-0.8
19,560	-				-0.7
19,560	-				+0.0
19,560	-				-0.5
19,560	-				-0.6
19,560	-				-0.3
19,560	-				+0.2
19,560	-				-1.0
19,560	-				-0.5
19,560	-				-0.2
19,671	+		GFF6444	0.13	-0.5
19,671	+		GFF6444	0.13	-0.4
19,671	+		GFF6444	0.13	-1.8
19,672	-		GFF6444	0.13	+2.4
19,729	-		GFF6444	0.16	+0.5
19,871	+		GFF6444	0.24	-0.2
19,871	+		GFF6444	0.24	+0.1
19,872	-		GFF6444	0.24	-0.3
19,872	-		GFF6444	0.24	+0.8
19,872	-		GFF6444	0.24	-0.2
19,872	-		GFF6444	0.24	+0.2