Strain Fitness in Variovorax sp. SCN45 around GFF6419

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
92,840	+		GFF6418	0.14	-0.1
92,840	+		GFF6418	0.14	-0.8
92,840	+		GFF6418	0.14	+0.6
92,840	+		GFF6418	0.14	-1.9
92,841	-		GFF6418	0.14	-0.5
92,841	-		GFF6418	0.14	-1.4
92,841	-		GFF6418	0.14	-0.6
92,841	-		GFF6418	0.14	-0.5
92,986	+		GFF6418	0.31	-0.3
92,987	-		GFF6418	0.32	-0.4
92,987	-		GFF6418	0.32	+0.4
92,987	-		GFF6418	0.32	-0.6
93,446	+		GFF6418	0.86	-0.4
93,447	-		GFF6418	0.86	-0.8
93,447	-		GFF6418	0.86	-0.7
93,467	+		GFF6418	0.89	-0.3
93,468	-		GFF6418	0.89	-1.7
93,468	-		GFF6418	0.89	-0.3
93,468	-		GFF6418	0.89	+0.8
93,468	-		GFF6418	0.89	-0.9
93,580	-				-0.5
93,618	-				+1.3
93,618	-				+0.3
93,680	+				-0.9
93,680	+				-0.2
93,680	+				-0.3
93,681	-				+0.2
93,681	-				+0.2
93,681	-				+0.3
93,741	+				-3.1
93,741	+				+0.7
93,741	+				+0.7
93,741	+				-0.3
93,741	+				+0.3
93,741	+				-0.8
93,741	+				+0.3
93,741	+				-1.1
93,741	+				-0.9
93,741	+				-0.9
93,741	+				-1.0
93,741	+				+0.0
93,741	+				-0.0
93,741	+				+1.2
93,741	+				-0.7
93,741	+				-0.8
93,741	+				-0.8
93,741	+				+2.6
93,741	+				-0.8
93,741	+				-0.2
93,741	+				-0.1
93,742	-				-0.8
93,742	-				+0.9
93,742	-				-1.1
93,742	-				-0.3
93,742	-				+1.9
93,742	-				-0.0
93,742	-				-0.1
93,742	-				-0.5
93,742	-				-0.5
93,742	-				+0.2
93,742	-				-0.4
93,742	-				-0.3
93,742	-				-0.9
93,742	-				+1.1
93,742	-				-0.6
93,742	-				-0.1
93,742	-				+0.4
93,742	-				-0.4
93,742	-				-1.8
93,823	-		GFF6419	0.11	-0.7
93,876	+		GFF6419	0.16	+0.1
93,877	-		GFF6419	0.16	-0.5
93,877	-		GFF6419	0.16	-1.4
93,877	-		GFF6419	0.16	-0.7
93,877	-		GFF6419	0.16	+0.4
93,877	-		GFF6419	0.16	-0.5
93,900	+		GFF6419	0.18	-0.6
93,900	+		GFF6419	0.18	+0.7
93,900	+		GFF6419	0.18	-0.5
93,901	-		GFF6419	0.18	-0.5
93,901	-		GFF6419	0.18	-0.2
93,901	-		GFF6419	0.18	-0.3
93,918	+		GFF6419	0.19	-0.1
93,918	+		GFF6419	0.19	+1.2
93,918	+		GFF6419	0.19	+0.9
93,918	+		GFF6419	0.19	-0.6
93,919	-		GFF6419	0.19	+0.3
93,919	-		GFF6419	0.19	-0.3
93,919	-		GFF6419	0.19	-1.2
93,919	-		GFF6419	0.19	+0.8
93,919	-		GFF6419	0.19	-0.0
93,919	-		GFF6419	0.19	-0.3
93,919	-		GFF6419	0.19	-1.6
93,954	+		GFF6419	0.22	-0.8
93,954	+		GFF6419	0.22	+0.9
93,954	+		GFF6419	0.22	-1.1
93,954	+		GFF6419	0.22	-0.2
93,954	+		GFF6419	0.22	-2.1
93,955	-		GFF6419	0.23	-0.5
93,955	-		GFF6419	0.23	-0.4
93,955	-		GFF6419	0.23	-0.1
93,955	-		GFF6419	0.23	-0.1
93,955	-		GFF6419	0.23	-1.5
93,996	+		GFF6419	0.26	-0.3
93,997	-		GFF6419	0.26	-1.6
94,062	+		GFF6419	0.32	-0.1
94,062	+		GFF6419	0.32	-0.7
94,062	+		GFF6419	0.32	-0.1
94,062	+		GFF6419	0.32	-0.9
94,062	+		GFF6419	0.32	-0.6
94,062	+		GFF6419	0.32	-0.3
94,062	+		GFF6419	0.32	-1.8
94,062	+		GFF6419	0.32	-0.6
94,062	+		GFF6419	0.32	+0.9
94,062	+		GFF6419	0.32	-0.9
94,062	+		GFF6419	0.32	+1.2
94,062	+		GFF6419	0.32	-1.3
94,062	+		GFF6419	0.32	+1.7
94,062	+		GFF6419	0.32	-0.5
94,062	+		GFF6419	0.32	-0.3
94,063	-		GFF6419	0.32	+0.5
94,063	-		GFF6419	0.32	-0.3
94,063	-		GFF6419	0.32	-0.1
94,063	-		GFF6419	0.32	-1.5
94,063	-		GFF6419	0.32	+0.2
94,063	-		GFF6419	0.32	-0.2
94,063	-		GFF6419	0.32	-0.3
94,063	-		GFF6419	0.32	+0.3
94,063	-		GFF6419	0.32	+0.2
94,063	-		GFF6419	0.32	+0.3
94,063	-		GFF6419	0.32	-0.5
94,063	-		GFF6419	0.32	-0.8
94,063	-		GFF6419	0.32	-1.4
94,063	-		GFF6419	0.32	+0.2
94,224	+		GFF6419	0.45	-0.6
94,224	+		GFF6419	0.45	+0.3
94,224	+		GFF6419	0.45	-1.3
94,224	+		GFF6419	0.45	-0.2
94,224	+		GFF6419	0.45	+1.2
94,224	+		GFF6419	0.45	-0.2
94,224	+		GFF6419	0.45	-1.1
94,224	+		GFF6419	0.45	-0.7
94,224	+		GFF6419	0.45	-0.6
94,224	+		GFF6419	0.45	-0.2
94,225	-		GFF6419	0.45	-0.4
94,225	-		GFF6419	0.45	+0.5
94,225	-		GFF6419	0.45	-1.2
94,225	-		GFF6419	0.45	-0.4
94,225	-		GFF6419	0.45	+0.3
94,225	-		GFF6419	0.45	-0.2
94,225	-		GFF6419	0.45	-0.4
94,225	-		GFF6419	0.45	-1.6
94,225	-		GFF6419	0.45	-1.3
94,225	-		GFF6419	0.45	-1.9
94,225	-		GFF6419	0.45	-0.8
94,458	+		GFF6419	0.65	-1.0
94,459	-		GFF6419	0.65	-0.9
94,459	-		GFF6419	0.65	+0.2
94,459	-		GFF6419	0.65	-0.9
94,506	+		GFF6419	0.69	+0.6
94,506	+		GFF6419	0.69	+0.3
94,506	+		GFF6419	0.69	-1.0
94,506	+		GFF6419	0.69	-0.1
94,506	+		GFF6419	0.69	-0.2
94,506	+		GFF6419	0.69	-2.1
94,506	+		GFF6419	0.69	+0.6
94,506	+		GFF6419	0.69	-0.6
94,506	+		GFF6419	0.69	+0.9
94,506	+		GFF6419	0.69	-1.5
94,506	+		GFF6419	0.69	+0.2
94,506	+		GFF6419	0.69	+0.0
94,506	+		GFF6419	0.69	+1.8
94,506	+		GFF6419	0.69	-1.1
94,506	+		GFF6419	0.69	-0.4
94,506	+		GFF6419	0.69	-0.5
94,506	+		GFF6419	0.69	-0.5
94,507	-		GFF6419	0.69	-0.1
94,507	-		GFF6419	0.69	+0.3
94,507	-		GFF6419	0.69	+0.0
94,507	-		GFF6419	0.69	-0.6
94,507	-		GFF6419	0.69	-0.9
94,507	-		GFF6419	0.69	-1.1
94,507	-		GFF6419	0.69	+0.5
94,507	-		GFF6419	0.69	-0.7
94,507	-		GFF6419	0.69	-1.0
94,507	-		GFF6419	0.69	+0.9
94,507	-		GFF6419	0.69	-0.8
94,507	-		GFF6419	0.69	-0.9
94,507	-		GFF6419	0.69	+0.1
94,507	-		GFF6419	0.69	-1.0
94,507	-		GFF6419	0.69	-1.0
94,507	-		GFF6419	0.69	-1.0
94,524	+		GFF6419	0.71	-0.8
94,524	+		GFF6419	0.71	-0.5
94,525	-		GFF6419	0.71	-1.6
94,525	-		GFF6419	0.71	+0.6
94,525	-		GFF6419	0.71	-0.8
94,539	+		GFF6419	0.72	-0.4
94,539	+		GFF6419	0.72	+1.2
94,539	+		GFF6419	0.72	-0.2
94,539	+		GFF6419	0.72	+0.0
94,540	-		GFF6419	0.72	-0.8
94,540	-		GFF6419	0.72	-0.3
94,540	-		GFF6419	0.72	-1.6
94,716	+		GFF6419	0.87	-0.4
94,716	+		GFF6419	0.87	-0.8
94,716	+		GFF6419	0.87	-0.3
94,716	+		GFF6419	0.87	-1.0
94,716	+		GFF6419	0.87	-0.1
94,716	+		GFF6419	0.87	+0.2
94,716	+		GFF6419	0.87	-0.3
94,717	-		GFF6419	0.87	+0.2
94,717	-		GFF6419	0.87	-1.3
94,717	-		GFF6419	0.87	-1.1
94,717	-		GFF6419	0.87	+0.1
94,717	-		GFF6419	0.87	-0.6
94,717	-		GFF6419	0.87	+0.4
94,717	-		GFF6419	0.87	+0.1
94,717	-		GFF6419	0.87	-2.3
94,717	-		GFF6419	0.87	-0.3
94,717	-		GFF6419	0.87	-1.3
94,717	-		GFF6419	0.87	-1.7
94,827	-				-1.0
94,883	-				+0.1
94,883	-				-1.1
94,883	-				-0.1
94,883	-				-0.1
94,915	+				-0.6
94,915	+				-2.9
94,915	+				-0.8
94,915	+				-0.6
94,916	-				-0.6
94,916	-				+0.6
94,916	-				-0.1
94,916	-				-0.9
94,960	-				+1.2
94,960	-				+1.2
94,996	+				-0.2
95,238	+		GFF6420	0.13	-0.4
95,238	+		GFF6420	0.13	+1.4
95,238	+		GFF6420	0.13	+0.4
95,238	+		GFF6420	0.13	-0.1
95,239	-		GFF6420	0.13	+0.2
95,239	-		GFF6420	0.13	-0.1
95,239	-		GFF6420	0.13	-0.5
95,239	-		GFF6420	0.13	+1.2
95,239	-		GFF6420	0.13	-0.6
95,280	+		GFF6420	0.16	-0.6
95,281	-		GFF6420	0.16	+0.4
95,281	-		GFF6420	0.16	-0.4
95,328	+		GFF6420	0.18	+1.4
95,328	+		GFF6420	0.18	+1.2
95,328	+		GFF6420	0.18	-0.8
95,328	+		GFF6420	0.18	-0.4
95,328	+		GFF6420	0.18	+0.1
95,328	+		GFF6420	0.18	-0.1
95,328	+		GFF6420	0.18	-1.0
95,328	+		GFF6420	0.18	+2.2
95,328	+		GFF6420	0.18	+0.7
95,328	+		GFF6420	0.18	-0.4
95,328	+		GFF6420	0.18	+1.5
95,328	+		GFF6420	0.18	+1.2
95,328	+		GFF6420	0.18	+0.8
95,329	-		GFF6420	0.19	-1.0
95,329	-		GFF6420	0.19	-0.1
95,329	-		GFF6420	0.19	-0.7
95,329	-		GFF6420	0.19	-0.5
95,329	-		GFF6420	0.19	-0.8
95,329	-		GFF6420	0.19	-0.6
95,329	-		GFF6420	0.19	-0.3
95,329	-		GFF6420	0.19	-0.9
95,329	-		GFF6420	0.19	-0.8
95,329	-		GFF6420	0.19	+0.3
95,329	-		GFF6420	0.19	-0.5
95,329	-		GFF6420	0.19	+0.0
95,329	-		GFF6420	0.19	-1.9
95,355	+		GFF6420	0.20	-0.0
95,355	+		GFF6420	0.20	+0.3
95,355	+		GFF6420	0.20	-1.8
95,356	-		GFF6420	0.20	-0.6
95,356	-		GFF6420	0.20	-1.8
95,364	+		GFF6420	0.21	+0.5
95,529	+		GFF6420	0.31	-0.6
95,529	+		GFF6420	0.31	-0.7
95,529	+		GFF6420	0.31	-0.7
95,530	-		GFF6420	0.31	-0.2
95,530	-		GFF6420	0.31	-0.3
95,530	-		GFF6420	0.31	-1.1
95,530	-		GFF6420	0.31	+0.6
95,530	-		GFF6420	0.31	-1.3
95,530	-		GFF6420	0.31	+1.4
95,530	-		GFF6420	0.31	-0.9
95,583	+		GFF6420	0.34	+1.2
95,637	+		GFF6420	0.38	+3.2
95,637	+		GFF6420	0.38	-0.6
95,637	+		GFF6420	0.38	-0.5
95,637	+		GFF6420	0.38	-0.1
95,637	+		GFF6420	0.38	-0.4
95,637	+		GFF6420	0.38	+1.6
95,637	+		GFF6420	0.38	-0.5
95,637	+		GFF6420	0.38	-1.8
95,637	+		GFF6420	0.38	+1.9
95,637	+		GFF6420	0.38	-0.2
95,638	-		GFF6420	0.38	-1.9
95,638	-		GFF6420	0.38	-1.4
95,638	-		GFF6420	0.38	-0.3
95,638	-		GFF6420	0.38	+1.2
95,638	-		GFF6420	0.38	-0.1
95,638	-		GFF6420	0.38	-2.2
95,638	-		GFF6420	0.38	-0.5
95,638	-		GFF6420	0.38	+0.6
95,638	-		GFF6420	0.38	+1.1
95,638	-		GFF6420	0.38	-0.5
95,638	-		GFF6420	0.38	-1.3
95,638	-		GFF6420	0.38	-1.2
95,638	-		GFF6420	0.38	+0.1
95,638	-		GFF6420	0.38	-0.7
95,638	-		GFF6420	0.38	-0.3
95,638	-		GFF6420	0.38	+0.7
95,638	-		GFF6420	0.38	-1.0
95,638	-		GFF6420	0.38	+1.9
95,638	-		GFF6420	0.38	+1.3
95,638	-		GFF6420	0.38	-1.0
95,679	+		GFF6420	0.40	-1.7
95,679	+		GFF6420	0.40	-0.3
95,679	+		GFF6420	0.40	-0.9
95,679	+		GFF6420	0.40	-1.3
95,679	+		GFF6420	0.40	+0.2
95,679	+		GFF6420	0.40	-0.5
95,679	+		GFF6420	0.40	-0.1
95,680	-		GFF6420	0.40	-0.4
95,680	-		GFF6420	0.40	-1.1
95,680	-		GFF6420	0.40	-1.9
95,680	-		GFF6420	0.40	+0.2
95,680	-		GFF6420	0.40	+0.4
95,680	-		GFF6420	0.40	-1.4
95,680	-		GFF6420	0.40	+0.0
95,790	+		GFF6420	0.47	-1.1
95,790	+		GFF6420	0.47	-0.7
95,790	+		GFF6420	0.47	+0.7
95,790	+		GFF6420	0.47	-0.5
95,790	+		GFF6420	0.47	-1.1
95,790	+		GFF6420	0.47	+0.1
95,790	+		GFF6420	0.47	-0.5
95,790	+		GFF6420	0.47	+0.3
95,790	+		GFF6420	0.47	-1.1
95,790	+		GFF6420	0.47	-0.1
95,790	+		GFF6420	0.47	-0.8
95,790	+		GFF6420	0.47	-0.8
95,790	+		GFF6420	0.47	-0.2
95,790	+		GFF6420	0.47	-0.4
95,790	+		GFF6420	0.47	-0.8
95,790	+		GFF6420	0.47	-0.9
95,790	+		GFF6420	0.47	-0.4
95,790	+		GFF6420	0.47	+0.1
95,790	+		GFF6420	0.47	+1.8
95,790	+		GFF6420	0.47	-0.9
95,791	-		GFF6420	0.47	+0.2
95,791	-		GFF6420	0.47	+0.6
95,791	-		GFF6420	0.47	-0.0
95,791	-		GFF6420	0.47	-0.7
95,791	-		GFF6420	0.47	-0.7
95,791	-		GFF6420	0.47	+1.0
95,791	-		GFF6420	0.47	-0.4
95,791	-		GFF6420	0.47	-0.1
95,791	-		GFF6420	0.47	-0.6
95,791	-		GFF6420	0.47	-0.8
95,791	-		GFF6420	0.47	-0.6
95,791	-		GFF6420	0.47	-0.6
95,791	-		GFF6420	0.47	+0.0
95,791	-		GFF6420	0.47	-1.2
95,791	-		GFF6420	0.47	+1.2
95,791	-		GFF6420	0.47	+0.2
95,791	-		GFF6420	0.47	-0.1
95,791	-		GFF6420	0.47	-0.7
95,791	-		GFF6420	0.47	-1.3
95,791	-		GFF6420	0.47	-1.3
95,791	-		GFF6420	0.47	+1.2
95,791	-		GFF6420	0.47	-1.0
95,791	-		GFF6420	0.47	-0.0
95,791	-		GFF6420	0.47	-0.4