Strain Fitness in Variovorax sp. SCN45 around GFF6316

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
104,547	-		GFF6315	0.23	-0.1
104,547	-		GFF6315	0.23	+0.6
104,547	-		GFF6315	0.23	-0.7
104,547	-		GFF6315	0.23	-0.8
104,588	+		GFF6315	0.26	-0.4
104,588	+		GFF6315	0.26	-0.7
104,588	+		GFF6315	0.26	-0.3
104,588	+		GFF6315	0.26	-1.3
104,588	+		GFF6315	0.26	-0.8
104,588	+		GFF6315	0.26	-0.7
104,588	+		GFF6315	0.26	-0.8
104,588	+		GFF6315	0.26	-0.4
104,589	-		GFF6315	0.26	-0.8
104,589	-		GFF6315	0.26	-0.8
104,589	-		GFF6315	0.26	+0.2
104,597	+		GFF6315	0.27	-1.8
104,597	+		GFF6315	0.27	+0.7
104,597	+		GFF6315	0.27	-0.3
104,597	+		GFF6315	0.27	+0.2
104,597	+		GFF6315	0.27	-0.4
104,598	-		GFF6315	0.27	+1.7
104,598	-		GFF6315	0.27	-1.4
104,598	-		GFF6315	0.27	-0.2
104,598	-		GFF6315	0.27	-0.8
104,598	-		GFF6315	0.27	-1.1
104,598	-		GFF6315	0.27	+0.1
104,598	-		GFF6315	0.27	-0.3
104,598	-		GFF6315	0.27	+0.5
104,663	+		GFF6315	0.32	-1.4
104,663	+		GFF6315	0.32	-0.8
104,663	+		GFF6315	0.32	-0.5
104,663	+		GFF6315	0.32	+0.2
104,663	+		GFF6315	0.32	-0.1
104,663	+		GFF6315	0.32	-0.1
104,664	-		GFF6315	0.32	+0.9
104,753	+		GFF6315	0.39	-1.0
104,753	+		GFF6315	0.39	+0.2
104,753	+		GFF6315	0.39	+0.1
104,753	+		GFF6315	0.39	-0.4
104,753	+		GFF6315	0.39	-0.4
104,753	+		GFF6315	0.39	-0.7
104,753	+		GFF6315	0.39	+1.0
104,753	+		GFF6315	0.39	-0.4
104,753	+		GFF6315	0.39	+1.3
104,753	+		GFF6315	0.39	+0.7
104,753	+		GFF6315	0.39	-0.1
104,753	+		GFF6315	0.39	+0.4
104,753	+		GFF6315	0.39	-1.2
104,753	+		GFF6315	0.39	-0.9
104,754	-		GFF6315	0.39	+0.6
104,754	-		GFF6315	0.39	-0.3
104,754	-		GFF6315	0.39	-0.9
104,754	-		GFF6315	0.39	+1.3
104,754	-		GFF6315	0.39	+1.2
104,754	-		GFF6315	0.39	-1.0
104,754	-		GFF6315	0.39	-0.6
104,981	+		GFF6315	0.57	-0.8
104,981	-		GFF6315	0.57	-0.3
104,982	-		GFF6315	0.57	-0.1
104,982	-		GFF6315	0.57	+1.0
105,002	+		GFF6315	0.59	-0.3
105,152	+		GFF6315	0.70	-0.2
105,152	+		GFF6315	0.70	+0.0
105,152	+		GFF6315	0.70	-0.7
105,152	+		GFF6315	0.70	-0.3
105,152	+		GFF6315	0.70	-1.2
105,152	+		GFF6315	0.70	+0.4
105,152	+		GFF6315	0.70	+1.2
105,152	+		GFF6315	0.70	-0.7
105,153	-		GFF6315	0.70	-0.1
105,153	-		GFF6315	0.70	-0.4
105,153	-		GFF6315	0.70	-1.2
105,153	-		GFF6315	0.70	-1.8
105,153	-		GFF6315	0.70	+0.3
105,153	-		GFF6315	0.70	-0.8
105,153	-		GFF6315	0.70	-1.1
105,153	-		GFF6315	0.70	-0.4
105,153	-		GFF6315	0.70	-0.8
105,206	+		GFF6315	0.75	-0.1
105,206	+		GFF6315	0.75	-1.1
105,206	+		GFF6315	0.75	-0.6
105,206	+		GFF6315	0.75	+0.8
105,206	+		GFF6315	0.75	-0.7
105,206	+		GFF6315	0.75	-2.5
105,206	+		GFF6315	0.75	+3.2
105,206	+		GFF6315	0.75	-0.1
105,206	+		GFF6315	0.75	+0.0
105,206	+		GFF6315	0.75	+1.0
105,206	+		GFF6315	0.75	-0.5
105,206	+		GFF6315	0.75	-1.3
105,206	+		GFF6315	0.75	+0.3
105,206	+		GFF6315	0.75	-1.5
105,206	+		GFF6315	0.75	-0.2
105,206	+		GFF6315	0.75	-0.7
105,206	+		GFF6315	0.75	+0.3
105,207	-		GFF6315	0.75	-0.6
105,207	-		GFF6315	0.75	-1.9
105,207	-		GFF6315	0.75	-0.8
105,207	-		GFF6315	0.75	-2.0
105,207	-		GFF6315	0.75	-0.8
105,207	-		GFF6315	0.75	-1.6
105,207	-		GFF6315	0.75	+0.3
105,207	-		GFF6315	0.75	-1.4
105,207	-		GFF6315	0.75	-1.2
105,207	-		GFF6315	0.75	-0.8
105,207	-		GFF6315	0.75	+0.7
105,288	+		GFF6315	0.81	-0.3
105,288	+		GFF6315	0.81	+0.7
105,288	+		GFF6315	0.81	-0.8
105,288	+		GFF6315	0.81	-0.7
105,288	+		GFF6315	0.81	-0.8
105,288	+		GFF6315	0.81	-0.7
105,288	+		GFF6315	0.81	+0.2
105,288	+		GFF6315	0.81	-1.3
105,288	+		GFF6315	0.81	+0.5
105,289	-		GFF6315	0.81	+0.1
105,289	-		GFF6315	0.81	-0.8
105,289	-		GFF6315	0.81	-2.3
105,289	-		GFF6315	0.81	-1.1
105,289	-		GFF6315	0.81	-0.4
105,289	-		GFF6315	0.81	-0.1
105,289	-		GFF6315	0.81	-0.7
105,293	+		GFF6315	0.82	-0.9
105,293	+		GFF6315	0.82	+0.5
105,293	+		GFF6315	0.82	-0.8
105,293	+		GFF6315	0.82	-0.3
105,293	+		GFF6315	0.82	-0.0
105,293	+		GFF6315	0.82	-1.2
105,293	+		GFF6315	0.82	-0.6
105,293	+		GFF6315	0.82	+0.4
105,293	+		GFF6315	0.82	-0.0
105,293	+		GFF6315	0.82	-0.7
105,293	+		GFF6315	0.82	-0.2
105,293	+		GFF6315	0.82	+1.5
105,293	+		GFF6315	0.82	-0.7
105,293	+		GFF6315	0.82	-0.2
105,294	-		GFF6315	0.82	-0.4
105,294	-		GFF6315	0.82	+0.4
105,294	-		GFF6315	0.82	+0.3
105,294	-		GFF6315	0.82	-0.4
105,294	-		GFF6315	0.82	+1.0
105,294	-		GFF6315	0.82	+0.4
105,294	-		GFF6315	0.82	-0.1
105,294	-		GFF6315	0.82	-0.4
105,294	-		GFF6315	0.82	-0.2
105,294	-		GFF6315	0.82	-0.4
105,294	-		GFF6315	0.82	-1.3
105,294	-		GFF6315	0.82	+0.3
105,299	+		GFF6315	0.82	-0.8
105,380	+		GFF6315	0.88	+1.0
105,407	+				-0.4
105,407	+				+0.7
105,408	-				+0.4
105,408	-				-0.5
105,437	+				-1.1
105,437	+				-0.3
105,437	+				-1.3
105,437	+				-0.8
105,437	+				-0.8
105,437	+				+0.0
105,438	-				-1.2
105,438	-				+1.2
105,438	-				+0.8
105,438	-				+0.6
105,438	-				+0.2
105,438	-				+0.2
105,446	+				-1.0
105,446	+				-1.3
105,446	+				+0.7
105,446	+				-0.4
105,447	-				+0.7
105,467	+				+0.3
105,467	+				-0.3
105,467	+				-0.5
105,467	+				-0.5
105,467	+				+0.7
105,467	+				-0.8
105,467	+				-0.5
105,467	+				-1.3
105,468	-				-1.9
105,468	-				-1.8
105,468	-				-0.4
105,538	-				-0.4
105,602	+		GFF6316	0.33	-1.3
105,602	+		GFF6316	0.33	-0.3
105,602	+		GFF6316	0.33	-0.9
105,602	+		GFF6316	0.33	-0.2
105,602	+		GFF6316	0.33	+0.4
105,602	+		GFF6316	0.33	-0.3
105,602	+		GFF6316	0.33	-0.1
105,602	+		GFF6316	0.33	+0.6
105,603	-		GFF6316	0.33	-1.4
105,603	-		GFF6316	0.33	-1.1
105,603	-		GFF6316	0.33	-0.7
105,603	-		GFF6316	0.33	+0.3
105,603	-		GFF6316	0.33	-0.9
105,603	-		GFF6316	0.33	-1.3
105,603	-		GFF6316	0.33	-0.8
105,603	-		GFF6316	0.33	-0.8
105,603	-		GFF6316	0.33	-0.2
105,603	-		GFF6316	0.33	-0.5
105,603	-		GFF6316	0.33	-0.2
105,603	-		GFF6316	0.33	+0.3
105,603	-		GFF6316	0.33	+1.6
105,934	+		GFF6317	0.14	+0.5
105,934	+		GFF6317	0.14	-0.1
105,934	+		GFF6317	0.14	-0.4
105,934	+		GFF6317	0.14	+0.2
105,934	+		GFF6317	0.14	+0.3
105,934	+		GFF6317	0.14	-1.2
105,934	+		GFF6317	0.14	+0.6
105,935	-		GFF6317	0.14	+1.2
105,935	-		GFF6317	0.14	+0.8
105,935	-		GFF6317	0.14	-0.0
105,935	-		GFF6317	0.14	+0.2
105,935	-		GFF6317	0.14	-0.8
105,935	-		GFF6317	0.14	+0.8
105,935	-		GFF6317	0.14	+0.9
105,935	-		GFF6317	0.14	-0.3
105,935	-		GFF6317	0.14	+1.8
105,935	-		GFF6317	0.14	-1.6
105,937	+		GFF6317	0.14	+0.4
105,937	+		GFF6317	0.14	-0.2
105,937	+		GFF6317	0.14	-0.1
105,937	+		GFF6317	0.14	+0.4
105,937	+		GFF6317	0.14	-0.7
105,937	+		GFF6317	0.14	+0.4
105,937	+		GFF6317	0.14	-0.8
105,937	+		GFF6317	0.14	-0.8
105,937	+		GFF6317	0.14	-0.9
105,938	-		GFF6317	0.14	+2.2
105,938	-		GFF6317	0.14	+0.6
105,938	-		GFF6317	0.14	-0.1
105,938	-		GFF6317	0.14	-1.6
105,938	-		GFF6317	0.14	+1.2
105,938	-		GFF6317	0.14	+0.0
105,938	-		GFF6317	0.14	-1.0
105,938	-		GFF6317	0.14	+0.6
105,938	-		GFF6317	0.14	+0.1
105,938	-		GFF6317	0.14	-1.8
105,938	-		GFF6317	0.14	+0.9
105,938	-		GFF6317	0.14	-0.5
106,141	-		GFF6317	0.29	+0.6
106,144	+		GFF6317	0.30	-1.1
106,144	+		GFF6317	0.30	-0.4
106,145	-		GFF6317	0.30	-1.2
106,145	-		GFF6317	0.30	-1.4
106,145	-		GFF6317	0.30	+0.2
106,192	+		GFF6317	0.33	-2.0
106,192	+		GFF6317	0.33	-0.5
106,192	+		GFF6317	0.33	+0.3
106,192	+		GFF6317	0.33	-0.5
106,192	+		GFF6317	0.33	-1.3
106,192	+		GFF6317	0.33	+0.2
106,192	+		GFF6317	0.33	-1.3
106,192	+		GFF6317	0.33	-1.1
106,192	+		GFF6317	0.33	-0.4
106,192	+		GFF6317	0.33	+0.1
106,192	+		GFF6317	0.33	+1.3
106,192	+		GFF6317	0.33	+0.6
106,192	+		GFF6317	0.33	-1.2
106,192	+		GFF6317	0.33	-0.3
106,192	+		GFF6317	0.33	-0.4
106,193	-		GFF6317	0.33	+0.2
106,193	-		GFF6317	0.33	-0.1
106,193	-		GFF6317	0.33	-2.0
106,193	-		GFF6317	0.33	-0.7
106,193	-		GFF6317	0.33	-0.9
106,193	-		GFF6317	0.33	+1.3
106,193	-		GFF6317	0.33	-0.8
106,193	-		GFF6317	0.33	-0.6
106,193	-		GFF6317	0.33	-0.1
106,193	-		GFF6317	0.33	-0.7
106,193	-		GFF6317	0.33	-0.6
106,193	-		GFF6317	0.33	+0.2
106,193	-		GFF6317	0.33	-1.7
106,193	-		GFF6317	0.33	-0.8
106,193	-		GFF6317	0.33	-0.5
106,193	-		GFF6317	0.33	-0.0
106,240	+		GFF6317	0.37	-2.0
106,240	+		GFF6317	0.37	-0.5
106,240	+		GFF6317	0.37	+1.8
106,241	-		GFF6317	0.37	-0.3
106,241	-		GFF6317	0.37	-0.5
106,241	-		GFF6317	0.37	-0.0
106,241	-		GFF6317	0.37	-0.5
106,264	+		GFF6317	0.39	-0.5
106,264	+		GFF6317	0.39	+0.1
106,265	-		GFF6317	0.39	-0.7
106,265	-		GFF6317	0.39	-1.5
106,339	+		GFF6317	0.44	+0.9
106,339	+		GFF6317	0.44	-0.6
106,339	+		GFF6317	0.44	+0.8
106,339	+		GFF6317	0.44	-1.0
106,339	+		GFF6317	0.44	-2.3
106,339	+		GFF6317	0.44	-0.8
106,339	+		GFF6317	0.44	-1.9
106,339	+		GFF6317	0.44	-0.9
106,339	+		GFF6317	0.44	+0.9
106,339	+		GFF6317	0.44	-0.4
106,339	+		GFF6317	0.44	+2.6
106,339	+		GFF6317	0.44	-0.4
106,339	+		GFF6317	0.44	-0.9
106,339	+		GFF6317	0.44	-1.1
106,339	+		GFF6317	0.44	+0.2
106,339	+		GFF6317	0.44	+1.8
106,340	-		GFF6317	0.45	-0.9
106,340	-		GFF6317	0.45	-0.1
106,340	-		GFF6317	0.45	-0.2
106,340	-		GFF6317	0.45	-0.8
106,340	-		GFF6317	0.45	-0.6
106,340	-		GFF6317	0.45	-0.3
106,340	-		GFF6317	0.45	+0.3
106,340	-		GFF6317	0.45	+1.7
106,340	-		GFF6317	0.45	-0.8
106,340	-		GFF6317	0.45	-0.4
106,342	+		GFF6317	0.45	-0.7
106,342	+		GFF6317	0.45	-0.1
106,342	+		GFF6317	0.45	+0.2
106,342	+		GFF6317	0.45	-0.3
106,342	+		GFF6317	0.45	-0.3
106,342	+		GFF6317	0.45	-0.7
106,342	+		GFF6317	0.45	-0.7
106,342	+		GFF6317	0.45	-0.8
106,342	+		GFF6317	0.45	+0.6
106,342	+		GFF6317	0.45	-0.3
106,342	+		GFF6317	0.45	-1.8
106,342	+		GFF6317	0.45	+2.2
106,342	+		GFF6317	0.45	-0.4
106,342	+		GFF6317	0.45	+0.9
106,342	+		GFF6317	0.45	-0.2
106,342	+		GFF6317	0.45	-0.3
106,342	+		GFF6317	0.45	-1.2
106,343	-		GFF6317	0.45	+0.2
106,343	-		GFF6317	0.45	-0.2
106,343	-		GFF6317	0.45	+0.0
106,343	-		GFF6317	0.45	-2.1
106,343	-		GFF6317	0.45	+0.6
106,343	-		GFF6317	0.45	-0.6
106,384	+		GFF6317	0.48	-0.9
106,684	+		GFF6317	0.71	-2.9
106,684	+		GFF6317	0.71	+0.8
106,685	-		GFF6317	0.71	-0.4