Strain Fitness in Variovorax sp. SCN45 around GFF5676

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
48,810	+		GFF5674	0.29	+0.3
48,810	+		GFF5674	0.29	+0.2
48,810	+		GFF5674	0.29	-0.3
48,810	+		GFF5674	0.29	+0.2
48,810	+		GFF5674	0.29	-0.8
48,810	+		GFF5674	0.29	-1.2
48,811	-		GFF5674	0.30	-0.1
48,811	-		GFF5674	0.30	-0.3
48,811	-		GFF5674	0.30	+3.6
48,811	-		GFF5674	0.30	-0.5
48,811	-		GFF5674	0.30	+0.6
49,430	+		GFF5675	0.14	+0.2
49,430	+		GFF5675	0.14	-0.8
49,430	+		GFF5675	0.14	-0.8
49,430	+		GFF5675	0.14	+1.3
49,430	+		GFF5675	0.14	-0.3
49,430	+		GFF5675	0.14	-0.1
49,430	+		GFF5675	0.14	-0.7
49,430	+		GFF5675	0.14	+1.0
49,430	+		GFF5675	0.14	-0.2
49,430	+		GFF5675	0.14	-1.0
49,431	-		GFF5675	0.14	-0.1
49,431	-		GFF5675	0.14	-0.6
49,431	-		GFF5675	0.14	+0.4
49,431	-		GFF5675	0.14	-0.0
49,431	-		GFF5675	0.14	-1.0
49,431	-		GFF5675	0.14	-0.8
49,431	-		GFF5675	0.14	-0.3
49,431	-		GFF5675	0.14	-1.3
49,538	+		GFF5675	0.41	-1.4
49,538	+		GFF5675	0.41	-0.3
49,538	+		GFF5675	0.41	+0.2
49,538	+		GFF5675	0.41	-0.8
49,538	+		GFF5675	0.41	+1.0
49,538	+		GFF5675	0.41	+0.0
49,538	+		GFF5675	0.41	-0.2
49,539	-		GFF5675	0.41	+0.2
49,539	-		GFF5675	0.41	-1.7
49,539	-		GFF5675	0.41	-0.2
49,539	-		GFF5675	0.41	+0.5
49,539	-		GFF5675	0.41	+0.5
49,539	-		GFF5675	0.41	-0.4
49,539	-		GFF5675	0.41	-0.5
49,679	+		GFF5675	0.75	+1.0
49,679	+		GFF5675	0.75	-0.7
49,679	+		GFF5675	0.75	-0.6
49,679	+		GFF5675	0.75	+0.0
49,679	+		GFF5675	0.75	-0.5
49,679	+		GFF5675	0.75	-1.7
49,680	-		GFF5675	0.75	+0.0
49,680	-		GFF5675	0.75	+0.4
49,680	-		GFF5675	0.75	-0.8
49,680	-		GFF5675	0.75	+1.6
49,680	-		GFF5675	0.75	+0.4
49,680	-		GFF5675	0.75	-0.3
49,680	-		GFF5675	0.75	+0.2
49,680	-		GFF5675	0.75	-0.6
49,767	+				-0.3
49,768	-				-1.1
49,798	+				-0.3
49,798	+				-1.5
49,798	+				-0.3
49,798	+				+0.6
49,798	+				+0.9
49,799	-				-2.6
49,799	-				-0.8
50,041	+		GFF5676	0.44	-0.3
50,041	+		GFF5676	0.44	-1.0
50,041	+		GFF5676	0.44	+0.8
50,041	+		GFF5676	0.44	-0.1
50,042	-		GFF5676	0.44	-0.5
50,042	-		GFF5676	0.44	-1.8
50,146	+		GFF5676	0.61	-0.5
50,146	+		GFF5676	0.61	+1.5
50,146	+		GFF5676	0.61	-0.3
50,146	+		GFF5676	0.61	+0.5
50,147	-		GFF5676	0.61	-1.1
50,147	-		GFF5676	0.61	+1.3
50,147	-		GFF5676	0.61	-0.3
50,147	-		GFF5676	0.61	+0.3
50,233	+		GFF5676	0.75	-0.4
50,233	+		GFF5676	0.75	+0.5
50,233	+		GFF5676	0.75	-1.5
50,234	-		GFF5676	0.75	+0.2
50,254	+		GFF5676	0.78	-0.9
50,254	+		GFF5676	0.78	+0.9
50,254	+		GFF5676	0.78	+0.0
50,254	+		GFF5676	0.78	+0.5
50,254	+		GFF5676	0.78	-1.2
50,255	-		GFF5676	0.79	-1.1
50,255	-		GFF5676	0.79	-1.0
50,255	-		GFF5676	0.79	+1.5
50,299	+		GFF5676	0.86	-0.1
50,299	+		GFF5676	0.86	+0.2
50,299	+		GFF5676	0.86	-0.9
50,300	-		GFF5676	0.86	-0.9
50,408	+				+0.3
50,408	+				-1.2
50,408	+				+1.8
50,409	-				+0.5
50,409	-				+0.4
50,409	-				-1.0
50,409	-				+1.3
50,409	-				+2.5
50,409	-				+0.9
50,409	-				+3.0
50,409	-				-1.3
50,409	-				-1.3
50,411	+				+0.1
50,411	+				+1.2
50,411	+				-1.7
50,411	+				+1.2
50,411	+				+0.4
50,411	+				-1.7
50,411	+				-1.0
50,412	-				+0.8
50,412	-				-0.6
50,412	-				-1.3
50,412	-				+0.3
50,412	-				+0.0
50,412	-				+0.4
50,412	-				+0.7
50,480	+				-1.1
50,481	-				-1.8
50,481	-				+0.5
50,481	-				+0.6
50,481	-				-0.5
50,492	+				-1.0
50,492	+				+1.2
50,492	+				-1.9
50,492	+				-1.2
50,492	+				-1.7
50,492	+				-0.9
50,493	-				-0.8
50,493	-				+0.8
50,493	-				-0.3
50,493	-				-0.2
50,493	-				-0.5
50,502	+				-0.6
50,502	+				-0.3
50,502	+				-0.4
50,502	+				-0.2
50,502	+				+0.9
50,502	+				+1.6
50,502	+				+0.6
50,503	-				-0.8
50,503	-				-0.2
50,503	-				-0.7
50,503	-				-0.0
50,503	-				+0.8
50,503	-				-1.3
50,503	-				-0.8
50,503	-				+1.0
50,503	-				+1.7
50,735	+		GFF5677	0.16	-0.7
50,735	+		GFF5677	0.16	+0.1
50,735	+		GFF5677	0.16	+0.0
50,735	+		GFF5677	0.16	+0.3
50,736	-		GFF5677	0.16	+1.0
50,736	-		GFF5677	0.16	+2.0
50,736	-		GFF5677	0.16	-0.1
50,736	-		GFF5677	0.16	+0.0
50,969	+		GFF5677	0.28	+0.2
50,969	+		GFF5677	0.28	+0.0
50,969	+		GFF5677	0.28	-1.5
50,969	+		GFF5677	0.28	-0.3
50,969	+		GFF5677	0.28	-0.2
50,969	+		GFF5677	0.28	+0.5
50,969	+		GFF5677	0.28	-0.7
50,969	+		GFF5677	0.28	+1.0
50,969	+		GFF5677	0.28	-0.6
50,969	+		GFF5677	0.28	-0.1
50,969	+		GFF5677	0.28	-0.1
50,969	+		GFF5677	0.28	-0.3
50,969	+		GFF5677	0.28	+0.9
50,969	+		GFF5677	0.28	+1.5
50,970	-		GFF5677	0.28	-0.4
50,970	-		GFF5677	0.28	-0.8
50,970	-		GFF5677	0.28	+0.0
50,970	-		GFF5677	0.28	+0.5
50,970	-		GFF5677	0.28	-1.0
50,970	-		GFF5677	0.28	-1.4
50,970	-		GFF5677	0.28	-0.3
50,970	-		GFF5677	0.28	-0.1
50,970	-		GFF5677	0.28	-0.7
50,970	-		GFF5677	0.28	+0.5
51,048	-		GFF5677	0.32	+0.0
51,071	+		GFF5677	0.33	+1.0
51,071	+		GFF5677	0.33	+0.0
51,071	+		GFF5677	0.33	-1.8
51,071	+		GFF5677	0.33	+0.5
51,071	+		GFF5677	0.33	+0.5
51,071	+		GFF5677	0.33	-0.9
51,072	-		GFF5677	0.33	+0.0
51,072	-		GFF5677	0.33	+0.6
51,072	-		GFF5677	0.33	+0.1
51,142	+		GFF5677	0.37	+0.2
51,142	+		GFF5677	0.37	-0.2
51,142	+		GFF5677	0.37	+0.5
51,143	-		GFF5677	0.37	+0.1
51,143	-		GFF5677	0.37	-0.3
51,143	-		GFF5677	0.37	-0.3
51,143	-		GFF5677	0.37	-0.9
51,272	+		GFF5677	0.43	-1.3
51,272	+		GFF5677	0.43	-0.9
51,272	+		GFF5677	0.43	-0.1
51,272	+		GFF5677	0.43	+3.6
51,272	+		GFF5677	0.43	+1.0
51,272	+		GFF5677	0.43	+0.2
51,272	+		GFF5677	0.43	-0.1
51,273	-		GFF5677	0.43	+0.5
51,273	-		GFF5677	0.43	-0.8
51,273	-		GFF5677	0.43	+0.5